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Search of human proteins with 56117842
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56117842 sphingomyelin phosphodiesterase 1, acid lysosomal
isoform 2 precursor [Homo sapiens]
(587 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56117842 sphingomyelin phosphodiesterase 1, acid lysosomal is... 1250 0.0
gi|56117840 sphingomyelin phosphodiesterase 1, acid lysosomal is... 1204 0.0
gi|57242798 acid sphingomyelinase-like phosphodiesterase 3B isof... 152 8e-37
gi|24307911 acid sphingomyelinase-like phosphodiesterase 3A [Hom... 125 1e-28
gi|57242800 acid sphingomyelinase-like phosphodiesterase 3B isof... 105 9e-23
gi|122937271 WAS protein homolog associated with actin, golgi me... 41 0.003
gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens] 37 0.066
gi|195947369 junction-mediating and regulatory protein [Homo sap... 35 0.15
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.15
gi|29826341 calmodulin binding transcription activator 2 [Homo s... 35 0.19
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 35 0.25
gi|13699803 WAS protein family, member 3 [Homo sapiens] 35 0.25
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 34 0.33
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 34 0.43
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 34 0.43
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 33 0.56
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 33 0.56
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 33 0.73
gi|47132519 Ras association and pleckstrin homology domains 1 is... 33 0.73
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 33 0.73
gi|146134388 YLP motif containing 1 [Homo sapiens] 33 0.73
gi|13994287 BTE-binding protein 4 [Homo sapiens] 33 0.95
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 33 0.95
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.95
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.95
gi|10864047 epidermal growth factor receptor pathway substrate 1... 33 0.95
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 33 0.95
gi|158534059 formin binding protein 4 [Homo sapiens] 32 1.2
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein... 32 1.2
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 32 1.2
>gi|56117842 sphingomyelin phosphodiesterase 1, acid lysosomal
isoform 2 precursor [Homo sapiens]
Length = 587
Score = 1250 bits (3234), Expect = 0.0
Identities = 587/587 (100%), Positives = 587/587 (100%)
Query: 1 MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE 60
MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE
Sbjct: 1 MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE 60
Query: 61 AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK 120
AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK
Sbjct: 61 AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK 120
Query: 121 LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL 180
LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL
Sbjct: 121 LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL 180
Query: 181 PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR 240
PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR
Sbjct: 181 PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR 240
Query: 241 PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT 300
PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT
Sbjct: 241 PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT 300
Query: 301 VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL 360
VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL
Sbjct: 301 VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL 360
Query: 361 RTLRYLSSVETQEGKRKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDE 420
RTLRYLSSVETQEGKRKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDE
Sbjct: 361 RTLRYLSSVETQEGKRKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDE 420
Query: 421 FEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLT 480
FEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLT
Sbjct: 421 FEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLT 480
Query: 481 QANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSE 540
QANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSE
Sbjct: 481 QANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSE 540
Query: 541 PCGTPCRLATLCAQLSARADSPALCRHLMPDGSLPEAQSLWPRPLFC 587
PCGTPCRLATLCAQLSARADSPALCRHLMPDGSLPEAQSLWPRPLFC
Sbjct: 541 PCGTPCRLATLCAQLSARADSPALCRHLMPDGSLPEAQSLWPRPLFC 587
>gi|56117840 sphingomyelin phosphodiesterase 1, acid lysosomal
isoform 1 precursor [Homo sapiens]
Length = 631
Score = 1204 bits (3115), Expect = 0.0
Identities = 576/631 (91%), Positives = 581/631 (92%), Gaps = 44/631 (6%)
Query: 1 MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE 60
MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE
Sbjct: 1 MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAE 60
Query: 61 AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK 120
AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK
Sbjct: 61 AHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIK 120
Query: 121 LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL 180
LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL
Sbjct: 121 LCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISL 180
Query: 181 PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR 240
PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR
Sbjct: 181 PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR 240
Query: 241 PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT 300
PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT
Sbjct: 241 PGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT 300
Query: 301 VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL 360
VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL
Sbjct: 301 VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL 360
Query: 361 RTLR------------------------------YLSSVE--------------TQEGKR 376
RTLR ++S + ++
Sbjct: 361 RTLRIGGFYALSPYPGLRLISLNMNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGD 420
Query: 377 KVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAV 436
KVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAV
Sbjct: 421 KVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAV 480
Query: 437 AFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYR 496
AFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYR
Sbjct: 481 AFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYR 540
Query: 497 ARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLS 556
ARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLS
Sbjct: 541 ARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLS 600
Query: 557 ARADSPALCRHLMPDGSLPEAQSLWPRPLFC 587
ARADSPALCRHLMPDGSLPEAQSLWPRPLFC
Sbjct: 601 ARADSPALCRHLMPDGSLPEAQSLWPRPLFC 631
>gi|57242798 acid sphingomyelinase-like phosphodiesterase 3B isoform
1 [Homo sapiens]
Length = 455
Score = 152 bits (384), Expect = 8e-37
Identities = 120/439 (27%), Positives = 185/439 (42%), Gaps = 91/439 (20%)
Query: 206 LTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSG 265
+ DLH D DY DP P +G P P AG WG+Y CD P + S +
Sbjct: 26 IADLHLDPDYKVSKDPFQVCP-----SAGSQPV--PDAGPWGDYL-CDSPWALINSSIYA 77
Query: 266 LGPAGPF-DMVYWTGDIPAHDVWHQTRQDQ-LRALTTVTALVRKFLGPVPVYPAVGNHES 323
+ P D + WTGD H + + L + +T L+R+ VY A+GNH+
Sbjct: 78 MKEIEPEPDFILWTGDDTPHVPDEKLGEAAVLEIVERLTKLIREVFPDTKVYAALGNHDF 137
Query: 324 TPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL----------------------- 360
P N FP S +Y +A+ W+PWL E++
Sbjct: 138 HPKNQFPA-------GSNNIYNQIAELWKPWLSNESIALFKKGAFYCEKLPGPSGAGRIV 190
Query: 361 ---------------------RTLRYLSSVETQEGKR--KVHIIGHIPPGHCLKSWS--W 395
+ ++L V T K V+I+GH+PPG K+ + W
Sbjct: 191 VLNTNLYYTSNALTADMADPGQQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAW 250
Query: 396 -------NYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA----T 444
Y ++V ++ +A QFFGH H D F + YD+ + P++ F+ P T
Sbjct: 251 FREGFNEKYLKVVRKHHRVIAGQFFGHHHTDSFRMLYDDAGV--PISAMFITPGVTPWKT 308
Query: 445 TYIGL-----NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARE 499
T G+ NP RV++ Y ++ + D TY +NL+QAN G P W+L Y+ E
Sbjct: 309 TLPGVVNGANNPAIRVFE----YDRATLSLKDMVTYFMNLSQANAQGT-PRWELEYQLTE 363
Query: 500 TYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARA 559
YG+P+ + H ++ R+ GD Q + ++Y+ + C C + +CA
Sbjct: 364 AYGVPDASAHSMHTVLDRIAGDQSTLQRY-YVYNSVSYSAGVCDEACSMQHVCAMRQVDI 422
Query: 560 DSPALCRHLMPDGSLPEAQ 578
D+ C L G+ P Q
Sbjct: 423 DAYTTC--LYASGTTPVPQ 439
>gi|24307911 acid sphingomyelinase-like phosphodiesterase 3A [Homo
sapiens]
Length = 453
Score = 125 bits (314), Expect = 1e-28
Identities = 122/461 (26%), Positives = 189/461 (40%), Gaps = 95/461 (20%)
Query: 172 IFSSWN----ISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPL 227
+ ++W+ + LP P PP PA G + +TDLH D Y D
Sbjct: 11 LLTAWHCRSGLGLPVAPAGGRNPP--PAIG----QFWHVTDLHLDPTYHITDD----HTK 60
Query: 228 CCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGP-FDMVYWTGDIPAHDV 286
C G AS PG +G+ CD P + + S + +G + WTGD P H
Sbjct: 61 VCASSKGAN-ASNPGP--FGDVL-CDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVP 116
Query: 287 WHQTRQDQ-LRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYE 345
+ D + +T +T ++ + V+PA+GNH+ P + P + +Y
Sbjct: 117 VPELSTDTVINVITNMTTTIQSLFPNLQVFPALGNHDYWPQDQLPVVTSK-------VYN 169
Query: 346 AMAKAWEPWLPAEALRTLR----YLSSVET------------------------------ 371
A+A W+PWL EA+ TLR Y V T
Sbjct: 170 AVANLWKPWLDEEAISTLRKGGFYSQKVTTNPNLRIISLNTNLYYGPNIMTLNKTDPANQ 229
Query: 372 -----------QEGKRKVHIIGHIPPGHCLKSWSWN----YYR-----IVARYENTLAAQ 411
Q+ K KV+II H+P G+ S + YY I +Y + +A Q
Sbjct: 230 FEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAGQ 289
Query: 412 FFGHTHVDEFEVFYDEETLSRPLAVAFLAPSATTYIGL------NPGYRVYQIDGNYSGS 465
F+GHTH D V D++ P+ F+AP+ T + NPG R++Q Y
Sbjct: 290 FYGHTHRDSIMVLSDKK--GSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQ----YDPR 343
Query: 466 SHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMR-GDMQL 524
+ +LD Y LNLT+AN+ G W+L Y +TY + + P + + L + D +
Sbjct: 344 DYKLLDMLQYYLNLTEANLKGE-SIWKLEYILTQTYDIEDLQPESLYGLAKQFTILDSKQ 402
Query: 525 FQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARADSPALC 565
F ++ + + S C C+ +CA ++ S A C
Sbjct: 403 FIKYYNYFFVSYDSSVTCDKTCKAFQICAIMNLDNISYADC 443
>gi|57242800 acid sphingomyelinase-like phosphodiesterase 3B isoform
2 [Homo sapiens]
Length = 373
Score = 105 bits (263), Expect = 9e-23
Identities = 86/320 (26%), Positives = 130/320 (40%), Gaps = 83/320 (25%)
Query: 206 LTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSG 265
+ DLH D DY DP P +G P P AG WG+Y CD P + S +
Sbjct: 26 IADLHLDPDYKVSKDPFQVCP-----SAGSQPV--PDAGPWGDYL-CDSPWALINSSIYA 77
Query: 266 LGPAGPF-DMVYWTGDIPAHDVWHQTRQDQ-LRALTTVTALVRKFLGPVPVYPAVGNHES 323
+ P D + WTGD H + + L + +T L+R+ VY A+GNH+
Sbjct: 78 MKEIEPEPDFILWTGDDTPHVPDEKLGEAAVLEIVERLTKLIREVFPDTKVYAALGNHDF 137
Query: 324 TPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEAL----------------------- 360
P N FP S +Y +A+ W+PWL E++
Sbjct: 138 HPKNQFPA-------GSNNIYNQIAELWKPWLSNESIALFKKGAFYCEKLPGPSGAGRIV 190
Query: 361 ---------------------RTLRYLSSVETQEGKR--KVHIIGHIPPGHCLKS----- 392
+ ++L V T K V+I+GH+PPG K+
Sbjct: 191 VLNTNLYYTSNALTADMADPGQQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAW 250
Query: 393 ----WSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA----T 444
++ Y ++V ++ +A QFFGH H D F + YD+ + P++ F+ P T
Sbjct: 251 FREGFNEKYLKVVRKHHRVIAGQFFGHHHTDSFRMLYDDAGV--PISAMFITPGVTPWKT 308
Query: 445 TYIGL-----NPGYRVYQID 459
T G+ NP RV++ D
Sbjct: 309 TLPGVVNGANNPAIRVFEYD 328
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 174 SSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDP---DCADPLCCR 230
SS +SLP P PPP PP PP P P R L + H L P D PL C
Sbjct: 632 SSEELSLPPPPPPPPPPPPPPPPPPPPLRALSSSSQAATHQNLGFRAPVKDDQPRPLVCE 691
Query: 231 RGSGLPPASRP 241
PA RP
Sbjct: 692 -----SPAERP 697
>gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens]
Length = 1007
Score = 36.6 bits (83), Expect = 0.066
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 26/154 (16%)
Query: 187 PPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCA--DPLCCRRGSGLPPASRPGAG 244
P P+ P+P P R L L C+ D LC RRG P S A
Sbjct: 590 PSSTPARPSPQVPAVRRL--------PPQLAQLSSPCSSSDSLCSRRGLSSPRLSLAPAE 641
Query: 245 YWGEYSKCDLPLRTLESLLSG----------LGPAGPFDMVYWTGDIPAHDVWHQTRQDQ 294
W K +L LL G LG G ++ G +P V + +
Sbjct: 642 AWKAKKKQELQHANSSPLLRGSHSLELRACELGNRGSKNLSQSPGAVPQALVAWRALGPK 701
Query: 295 LRALTTVTALVRKFLGPVPVYPAVGNHESTPVNS 328
L L++ LV + L P P++P HE+ P S
Sbjct: 702 L--LSSSNELVTRHLPPAPLFP----HETPPTQS 729
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 35.4 bits (80), Expect = 0.15
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 181 PTVPKPPPKPPSPPAPGAPVSR 202
PT P PPP PP PP P PV++
Sbjct: 809 PTPPPPPPPPPPPPPPPLPVAK 830
Score = 31.2 bits (69), Expect = 2.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 180 LPTVPKPPPKPPSPPAP 196
LP P PPP PP PP P
Sbjct: 807 LPPTPPPPPPPPPPPPP 823
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 806 PLPPTPPPPPPPPPPPPPP 824
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.4 bits (80), Expect = 0.15
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 43/205 (20%)
Query: 5 GASLRQSCPR-SGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAEAHP 63
G L CP +GR + G +P LL GL L L L L L LAL VL A A A
Sbjct: 1398 GPLLLPVCPLPTGRRDERSGPLASPVLLETGLPLPLPLPLPLPLAL--PAVLRAQARAPT 1455
Query: 64 LSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCN 123
P PA L +CP +K++P R ++ +
Sbjct: 1456 PLPPLLPAPL---------------ASCP----------PPMKRKPGRPRRSPPSMLSLD 1490
Query: 124 LLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDI---FSSWNISL 180
+ PPA + R +L P + + ST + F + I
Sbjct: 1491 GPLVRPPA------------GAALGRELLLLPGQPQTPVFPSTHDPRTVTLDFRNAGIPA 1538
Query: 181 PTVPKPPPKPPSPPAPGAPVSRILF 205
P P PP PP PP P +++ F
Sbjct: 1539 PPPPLPPQPPPPPPPPPVEPTKLPF 1563
Score = 31.6 bits (70), Expect = 2.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 184 PKPPPKPPSPPAPGAPV 200
P PPP PP PP PG P+
Sbjct: 689 PLPPPPPPPPPQPGFPM 705
>gi|29826341 calmodulin binding transcription activator 2 [Homo
sapiens]
Length = 1202
Score = 35.0 bits (79), Expect = 0.19
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 181 PTVPKPPPKPPSPPAPGAPVSRI 203
P +P PPP PP PAP P SR+
Sbjct: 460 PPIPSPPPSPPPSPAPLEPSSRV 482
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 34.7 bits (78), Expect = 0.25
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 169 HWDIFSSWNISLPTVPKPPPKPPSPPAPGAP 199
H+D P P PPP PP PP P AP
Sbjct: 2025 HYDKLYPLRPQTPEPPPPPPPPPPPPLPAAP 2055
Score = 32.3 bits (72), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 181 PTVPKPPPKPPSPPAPGAPVS 201
P P+PPP PP PP P P +
Sbjct: 2034 PQTPEPPPPPPPPPPPPLPAA 2054
Score = 30.8 bits (68), Expect = 3.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 178 ISLPTVPKPPPKPPSPPAP 196
+SLP++P+PPP+ P P P
Sbjct: 2475 VSLPSLPQPPPQAPPPQCP 2493
Score = 30.4 bits (67), Expect = 4.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAPVS 201
P P PPP PP P AP P S
Sbjct: 2040 PPPPPPPPPPPLPAAPPQPAS 2060
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 34.7 bits (78), Expect = 0.25
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 178 ISLPTVPKPPPKPPSPPAPGAPVS 201
++ P P PPP PP PP PG+ +S
Sbjct: 392 VTAPPPPGPPPPPPGPPGPGSSLS 415
Score = 29.6 bits (65), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 180 LPTVPKPPPKPPSPPAPGAPVSRI 203
L T P PP PP PP P P S +
Sbjct: 391 LVTAPPPPGPPPPPPGPPGPGSSL 414
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 34.3 bits (77), Expect = 0.33
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 181 PTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASR 240
P P PPP P PP PG P S + + G P A PL +G G A
Sbjct: 171 PPPPGPPPPPGPPPPPGLPPSGVPAAA-------HGAGGGPPPAPPLPAAQGPGGGGAGA 223
Query: 241 PG 242
PG
Sbjct: 224 PG 225
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 33.9 bits (76), Expect = 0.43
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 181 PTVPKPPPKPP---SPPAPGA-----PVSRILFLTDLHWDHDY----LEGTDPDCADPLC 228
P P PPP PP +PP PGA P ++LF+ L Y L G PL
Sbjct: 5 PAPPPPPPPPPPLAAPPPPGASAKGPPARKLLFMCTLSLSVTYLCYSLLGGSGSLQFPLA 64
Query: 229 CRRGSGL---PPASRP 241
+ G PP S P
Sbjct: 65 LQESPGAAAEPPPSPP 80
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 33.9 bits (76), Expect = 0.43
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 182 TVPKPPPKPPSPPAP-----GAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLP 236
T P PP PP+PP P G P + F W D+ P PLC R S P
Sbjct: 1410 TDPSTPPAPPTPPHPATPGDGFPSNDSGFGGSFEWAEDF--PLLPPPGPPLCFSRFSVSP 1467
Query: 237 PASRPG 242
PG
Sbjct: 1468 ALETPG 1473
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.56
Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 22/114 (19%)
Query: 177 NISLPTVPKPPPKPP-----SPPAPGA----PVSRIL-----FLTDLHWDHDYLEGTDPD 222
++SLP P PP PP PP P A P R L +L + EG
Sbjct: 458 HLSLPPGPSSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFG---TEGPPRP 514
Query: 223 CADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLG-----PAGP 271
PL R G PPASR G ++ P T S S G PAGP
Sbjct: 515 APPPLPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGP 568
Score = 31.6 bits (70), Expect = 2.1
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 22/79 (27%)
Query: 181 PTVPKPPP----KPPS-----PPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRR 231
P +P PPP PPS PP P +P S + L + LEG C R
Sbjct: 773 PALPPPPPLAKFPPPSQPQPPPPPPPSPASLLKSLASV------LEGQK-------YCYR 819
Query: 232 GSGLPPASRPGAGYWGEYS 250
G+G ++RPG +YS
Sbjct: 820 GTGAAVSTRPGPLPTTQYS 838
Score = 30.8 bits (68), Expect = 3.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 184 PKPPPKPPSPPAPGAPVSRILFLT 207
P PPP PP PP PG S LT
Sbjct: 254 PPPPPPPPPPPLPGLATSPPFQLT 277
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 178 ISLPTVPKPPPKPPSPPAP 196
+ LP P PPP PP PP P
Sbjct: 244 LPLPPPPLPPPPPPPPPPP 262
Score = 30.0 bits (66), Expect = 6.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 181 PTVPKPPPKPPSPPAP 196
P +P PPP PP PP P
Sbjct: 249 PPLPPPPPPPPPPPPP 264
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 33.5 bits (75), Expect = 0.56
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 184 PKPPPKPPSPPAPGAP 199
P PPP PP+PPAP AP
Sbjct: 208 PPPPPPPPAPPAPPAP 223
Score = 31.6 bits (70), Expect = 2.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 181 PTVPKPPPKPPSPPAP 196
P P PPP PP+PPAP
Sbjct: 208 PPPPPPPPAPPAPPAP 223
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 33.1 bits (74), Expect = 0.73
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P AP
Sbjct: 2001 PPPPPPPPPPPPPPPPSAP 2019
Score = 32.7 bits (73), Expect = 0.95
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
PT P PPP PP PP P P
Sbjct: 1995 PTPPPPPPPPPPPPPPPPP 2013
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 182 TVPKPPPKPPSPPAPGAPVS 201
T P PPP PP PPAP P S
Sbjct: 1957 TPPPPPPPPPLPPAPPQPSS 1976
Score = 31.2 bits (69), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 1994 PPTPPPPPPPPPPPPPPPP 2012
Score = 31.2 bits (69), Expect = 2.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAPVS 201
P P PPP PP PP P P S
Sbjct: 1997 PPPPPPPPPPPPPPPPPPPPS 2017
Score = 29.6 bits (65), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 181 PTVPKPPPKPPSPPAPGA 198
P P PPP PP+PP P +
Sbjct: 1959 PPPPPPPPLPPAPPQPSS 1976
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 33.1 bits (74), Expect = 0.73
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 172 IFSSWNISLPTVPKPPPKPPSPPAPGAP 199
I + + S P+ P PPP PP PP P P
Sbjct: 615 IVTPYTASQPSPPLPPPPPPPPPPPPPP 642
Score = 32.0 bits (71), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 180 LPTVPKPPPKPPSPPAPGAP 199
LP P PPP PP PP P P
Sbjct: 628 LPPPPPPPPPPPPPPPPPPP 647
Score = 31.6 bits (70), Expect = 2.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P +P PPP PP PP P P
Sbjct: 626 PPLPPPPPPPPPPPPPPPP 644
Score = 30.8 bits (68), Expect = 3.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 179 SLPTVPKPPPKPPSPPAPGAP 199
S P P PPP PP PP P P
Sbjct: 625 SPPLPPPPPPPPPPPPPPPPP 645
Score = 30.8 bits (68), Expect = 3.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 181 PTVPKPPPKPPSPPAPGAPV 200
P P PPP PP PP P P+
Sbjct: 630 PPPPPPPPPPPPPPPPPPPL 649
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 632 PPPPPPPPPPPPPPPPPLP 650
Score = 30.0 bits (66), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 183 VPKPPPKPPSPPAPGAPVSRI 203
V PPP PP PP PG+ ++++
Sbjct: 708 VVPPPPPPPPPPTPGSAMAQL 728
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.1 bits (74), Expect = 0.73
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 176 WNISLPTVPKPPPKPPSPPAPGAP 199
W +P PPP PP PPAP P
Sbjct: 611 WTSLTRELPPPPPAPPPPPAPSPP 634
Score = 30.8 bits (68), Expect = 3.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 181 PTVPKPPPKPPSPPAPGAPVSRILFL 206
P P PPP P PPAP R L L
Sbjct: 622 PPAPPPPPAPSPPPAPATSSRRPLLL 647
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 33.1 bits (74), Expect = 0.73
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 174 SSWNISLPTVPKPPPKPPSPPAPGAPV--SRILFLTDLHWDHDYLEG 218
SS ++ P VP PPP PP P P PV + + WD D G
Sbjct: 1535 SSVPVTRPPVPIPPPPPPPPLPPPPPVIKPQTSAVEQERWDEDSFYG 1581
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 32.7 bits (73), Expect = 0.95
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 181 PTVPKPPPKPP--SPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPA 238
P P PPP PP S P PGA + L + D G P A P + P +
Sbjct: 53 PGTPGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSS 112
Query: 239 SR-PGA 243
R PGA
Sbjct: 113 GRAPGA 118
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 32.7 bits (73), Expect = 0.95
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 3/19 (15%)
Query: 184 PKPPP---KPPSPPAPGAP 199
P+PPP +PP PPAPGAP
Sbjct: 316 PRPPPAARRPPPPPAPGAP 334
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.95
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 174 SSWNISLPTVPKPPPKPPSPPAPGAP 199
SS +IS P PPP PP PP P P
Sbjct: 2397 SSLDISAQPPPPPPPPPPPPPPPPPP 2422
Score = 32.0 bits (71), Expect = 1.6
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Query: 90 TCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWR 149
TCP+CK T +N+G K PN ++CNL P HL E ++ W
Sbjct: 1058 TCPLCK---TELNIGSKDPPNFNTCTECKNQVCNLCGFNPTP------HLTE---IQEWL 1105
Query: 150 RSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPV 200
A LG + K PP P P A PV
Sbjct: 1106 CLNCQTQRAISGQLGD-----------------IRKMPPAPSGPKASPMPV 1139
Score = 32.0 bits (71), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 FSSWNISLPTVPKPPPKPPSPPAPGAP 199
F S ++ + P PPP PP PP P P
Sbjct: 2394 FRSSSLDISAQPPPPPPPPPPPPPPPP 2420
Score = 30.8 bits (68), Expect = 3.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 181 PTVPKPPPKPPSPPAPGAPV 200
P P PPP PP PP P P+
Sbjct: 2408 PPPPPPPPPPPPPPPPPPPL 2427
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2407 PPPPPPPPPPPPPPPPPPP 2425
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2410 PPPPPPPPPPPPPPPPPLP 2428
Score = 29.6 bits (65), Expect = 8.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2411 PPPPPPPPPPPPPPPPLPP 2429
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.7 bits (73), Expect = 0.95
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 174 SSWNISLPTVPKPPPKPPSPPAPGAP 199
SS +IS P PPP PP PP P P
Sbjct: 2397 SSLDISAQPPPPPPPPPPPPPPPPPP 2422
Score = 32.0 bits (71), Expect = 1.6
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Query: 90 TCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWR 149
TCP+CK T +N+G K PN ++CNL P HL E ++ W
Sbjct: 1058 TCPLCK---TELNIGSKDPPNFNTCTECKNQVCNLCGFNPTP------HLTE---IQEWL 1105
Query: 150 RSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPV 200
A LG + K PP P P A PV
Sbjct: 1106 CLNCQTQRAISGQLGD-----------------IRKMPPAPSGPKASPMPV 1139
Score = 32.0 bits (71), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 FSSWNISLPTVPKPPPKPPSPPAPGAP 199
F S ++ + P PPP PP PP P P
Sbjct: 2394 FRSSSLDISAQPPPPPPPPPPPPPPPP 2420
Score = 30.8 bits (68), Expect = 3.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 181 PTVPKPPPKPPSPPAPGAPV 200
P P PPP PP PP P P+
Sbjct: 2408 PPPPPPPPPPPPPPPPPPPL 2427
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2407 PPPPPPPPPPPPPPPPPPP 2425
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2410 PPPPPPPPPPPPPPPPPLP 2428
Score = 29.6 bits (65), Expect = 8.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PP P P
Sbjct: 2411 PPPPPPPPPPPPPPPPLPP 2429
>gi|10864047 epidermal growth factor receptor pathway substrate
15-like 1 [Homo sapiens]
Length = 864
Score = 32.7 bits (73), Expect = 0.95
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 184 PKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDP------DCADPLCCRRGSGLP 236
P PPK P+PP P P + ++ L D+ E DP D DP ++G G P
Sbjct: 777 PALPPKKPAPPRPKPPSGKSTPVSQL-GSADFPEAPDPFQPLGADSGDPFQSKKGFGDP 834
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 32.7 bits (73), Expect = 0.95
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 226 PLCCRRGSGLPPASRPGAGYW---GEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIP 282
P C +RG P A+RPG W G K PL LES L G+ P P G P
Sbjct: 580 PACHQRGFKDPGATRPGVWRWLPEGSAPK-PSPLHCLESALRGILPVRPLRFACVGGPSP 638
Query: 283 A 283
+
Sbjct: 639 S 639
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 32.3 bits (72), Expect = 1.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 181 PTVPKPPPKPPSPPAPGAP 199
P P PPP PP PPAP P
Sbjct: 905 PPPPPPPPPPPPPPAPKMP 923
Score = 29.6 bits (65), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 178 ISLPTVPKPPPKPPSPPAPGAP 199
+ +P P PPP+ P PP P P
Sbjct: 709 LEMPPPPPPPPESPPPPPPPPP 730
Score = 29.6 bits (65), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 182 TVPKPPPKPPSPPAPGAPVSRI 203
T+ +PPP PP PP P P ++
Sbjct: 901 TIIEPPPPPPPPPPPPPPAPKM 922
>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
[Homo sapiens]
Length = 480
Score = 32.3 bits (72), Expect = 1.2
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 125 LKIAP---PAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLP 181
L+++P PAV + +L + +V+ R + + E G ISL
Sbjct: 101 LRLSPATAPAVLAAATYLQMEHVVQACHRFIQASYEPLG-----------------ISLR 143
Query: 182 TVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRP 241
+ PP PP+ P PG+P EG + C +G P + P
Sbjct: 144 PLEAEPPTPPTAPPPGSPRRS--------------EGHPDPPTESRSCSQGPPSPASPDP 189
Query: 242 GAGYWGEY 249
A W +Y
Sbjct: 190 KACNWKKY 197
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 32.3 bits (72), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 175 SWNISLPTVPKPPPKPP-SPPAPGAPVSRILF 205
S S P+ P PPP PP PPAP P + + F
Sbjct: 1564 SGRASPPSTPPPPPPPPGPPPAPYRPCAHLAF 1595
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,765,273
Number of Sequences: 37866
Number of extensions: 1540165
Number of successful extensions: 14519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 12540
Number of HSP's gapped (non-prelim): 1626
length of query: 587
length of database: 18,247,518
effective HSP length: 108
effective length of query: 479
effective length of database: 14,157,990
effective search space: 6781677210
effective search space used: 6781677210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.