Guide to the Human Genome
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Name: SMPDL3B Sequence: fasta or formatted (455aa) NCBI GI: 57242798
Description:

acid sphingomyelinase-like phosphodiesterase 3B isoform 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt prot [373aa] acid sphingomyelinase-like phosphodiesterase 3B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         42           2
 C cysteine            1.8          8           1
 D aspartate           6.4         29           2
 E glutamate           4.6         21           1
 F phenylalanine       4.4         20           2
 G glycine             6.8         31           2
 H histidine           3.1         14           3
 I isoleucine          4.2         19           1
 K lysine              4.4         20           2
 L leucine             9.5         43           3
 M methionine          2.6         12           1
 N asparagine          4.2         19           2
 P proline             6.8         31           2
 Q glutamine           3.7         17           2
 R arginine            3.3         15           1
 S serine              5.3         24           2
 T threonine           5.5         25           2
 V valine              7.0         32           2
 W tryptophan          2.6         12           1
 Y tyrosine            4.6         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acid sphingomyelinase-like phosphodiesterase 3B isof... 
SMPDL3B               0.738   acid sphingomyelinase-like phosphodiesterase 3B isof...
SMPDL3A               0.358   acid sphingomyelinase-like phosphodiesterase 3A [Hom...
SMPD1                 0.182   sphingomyelin phosphodiesterase 1, acid lysosomal is...
SMPD1                 0.137   sphingomyelin phosphodiesterase 1, acid lysosomal is...
CPPED1                0.006   calcineurin-like phosphoesterase domain containing ...
USH2A                 0.005   usherin isoform B 
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
AES                   0.005   amino-terminal enhancer of split isoform c 
AES                   0.005   amino-terminal enhancer of split isoform a 
AES                   0.005   amino-terminal enhancer of split isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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