Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 56090618
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56090618 CMT1A duplicated region transcript 15 [Homo
sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56090618 CMT1A duplicated region transcript 15 [Homo sapiens] 387 e-108
gi|169215684 PREDICTED: hypothetical protein [Homo sapiens] 93 2e-19
gi|47551356 hypothetical protein LOC408029 [Homo sapiens] 51 5e-07
gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo ... 48 6e-06
gi|89058402 PREDICTED: hypothetical protein [Homo sapiens] 48 6e-06
gi|47524184 hypothetical protein LOC29798 [Homo sapiens] 48 6e-06
gi|89037235 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 42 2e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 39 0.002
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 39 0.003
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 39 0.003
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 36 0.022
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 35 0.029
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 35 0.038
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 35 0.038
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 35 0.038
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 35 0.038
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 35 0.038
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 35 0.038
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 34 0.065
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 34 0.065
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap... 34 0.065
gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo sapiens] 34 0.085
gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo sapiens] 34 0.085
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|23957680 ral guanine nucleotide dissociation stimulator-like ... 33 0.14
gi|27262638 sperm associated antigen 1 [Homo sapiens] 33 0.14
gi|27262636 sperm associated antigen 1 [Homo sapiens] 33 0.14
gi|110349719 titin isoform N2-A [Homo sapiens] 33 0.19
>gi|56090618 CMT1A duplicated region transcript 15 [Homo sapiens]
Length = 188
Score = 387 bits (993), Expect = e-108
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MFSCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQA 60
MFSCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQA
Sbjct: 1 MFSCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQA 60
Query: 61 TPEIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALEL 120
TPEIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALEL
Sbjct: 61 TPEIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALEL 120
Query: 121 EGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPAPRGNLLLQAWMRVHSWASRLFAP 180
EGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPAPRGNLLLQAWMRVHSWASRLFAP
Sbjct: 121 EGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPAPRGNLLLQAWMRVHSWASRLFAP 180
Query: 181 NVLPGTGP 188
NVLPGTGP
Sbjct: 181 NVLPGTGP 188
>gi|169215684 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 92.8 bits (229), Expect = 2e-19
Identities = 69/158 (43%), Positives = 78/158 (49%), Gaps = 37/158 (23%)
Query: 1 MFSCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQA----- 55
MF CC PTS G FRNG R+ P P QVPQD Q
Sbjct: 1 MFLCCIPTSPGSGFRNG----------RKAPPDPPH---------QVPQDRSHQVDIRPQ 41
Query: 56 --LAGQATPEIPLGLQLHTVLVQ-EIQELIEAQTLAPGPCAEVRALPAPAAEPEPA-WEE 111
LAGQA+P IP G LH VL Q E ELIE Q AP AE++ P PA EP PA +
Sbjct: 42 MELAGQASPVIPPGPHLHIVLFQPEPLELIETQAHAPASGAEIQLFPVPAVEPVPAPGAD 101
Query: 112 APPERALELEGAP---------AKDQTNEELPEITEVP 140
+PP ALELE AP A+DQ +EELP+ P
Sbjct: 102 SPPGTALELEEAPEPSFCCPGTAQDQPSEELPDFMAPP 139
>gi|47551356 hypothetical protein LOC408029 [Homo sapiens]
Length = 209
Score = 51.2 bits (121), Expect = 5e-07
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 85 QTLAPGPCAEVRALPAPAAEPEPA-WEEAPPERALELEGAP---------AKDQTNEELP 134
+TLAP AE++ P PA EP PA ++PP ALELE AP A+DQ +EELP
Sbjct: 13 ETLAPASGAEIQRFPVPAVEPVPAPGADSPPGTALELEEAPEPSCRCPGTAQDQPSEELP 72
Query: 135 EITEVP 140
+ P
Sbjct: 73 DFMAPP 78
>gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo
sapiens]
Length = 130
Score = 47.8 bits (112), Expect = 6e-06
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 85 QTLAPGPCAEVRALPAPAAEPEPA-WEEAPPERALELEGAP---------AKDQTNEELP 134
Q AP AE++ P PA EP PA ++PP ALELE AP A+DQ +EELP
Sbjct: 7 QLSAPASGAEIQLFPVPAVEPVPAPGADSPPGTALELEEAPEPSFCCPGTAQDQPSEELP 66
Query: 135 EITEVP 140
+ P
Sbjct: 67 DFMAPP 72
>gi|89058402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 47.8 bits (112), Expect = 6e-06
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 85 QTLAPGPCAEVRALPAPAAEPEPA-WEEAPPERALELEGAP---------AKDQTNEELP 134
Q AP AE++ P PA EP PA ++PP ALELE AP A+DQ +EELP
Sbjct: 7 QLSAPASGAEIQLFPVPAVEPVPAPGADSPPGTALELEEAPEPSFCCPGTAQDQPSEELP 66
Query: 135 EITEVP 140
+ P
Sbjct: 67 DFMAPP 72
>gi|47524184 hypothetical protein LOC29798 [Homo sapiens]
Length = 203
Score = 47.8 bits (112), Expect = 6e-06
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 85 QTLAPGPCAEVRALPAPAAEPEPA-WEEAPPERALELEGAP---------AKDQTNEELP 134
Q AP AE++ P PA EP PA ++PP ALELE AP A+DQ +EELP
Sbjct: 7 QLSAPASGAEIQRFPVPAVEPVPAPGADSPPGTALELEEAPEPSCRCPGTAQDQPSEELP 66
Query: 135 EITEVP 140
+ P
Sbjct: 67 DFMAPP 72
>gi|89037235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 44.7 bits (104), Expect = 5e-05
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 85 QTLAPGPCAEVRALPAPAAEPEPA-WEEAPPERALELEGAP---------AKDQTNEELP 134
Q A AE++ P PA EP PA ++PP ALELE AP A+DQ +EELP
Sbjct: 7 QLSAAASGAEIQLFPVPAVEPVPAPGADSPPGTALELEEAPEPSFCCPGTAQDQPSEELP 66
Query: 135 EITEVP 140
+ P
Sbjct: 67 DFMAPP 72
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 42.4 bits (98), Expect = 2e-04
Identities = 42/131 (32%), Positives = 47/131 (35%), Gaps = 6/131 (4%)
Query: 32 PHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIE-AQTLAPG 90
P P LS I P L +AT E L + E A A
Sbjct: 41 PAPPLLSEASPEPIPEPCPELAPGPCPEATSESATELYTEPTPEPATEPASEPAPEPATE 100
Query: 91 PCAEVRALPAPAAEPEPAWEEAP---PERALELEGAPAKDQTNEELPEIT--EVPESIKR 145
P E PAP PEPA E AP PE ALE PA + T E PE+ PE +
Sbjct: 101 PAPEPATEPAPEPAPEPATESAPEPTPEPALESVPEPAPELTPEVAPELAPEPTPEPVTE 160
Query: 146 RLGRRVPAATP 156
P A P
Sbjct: 161 LAPEFCPEAAP 171
Score = 28.1 bits (61), Expect = 4.7
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 21/92 (22%)
Query: 88 APGPCAEVRALPAPAAEPEPAWEEAP-------------------PERALELEGAPAKDQ 128
AP P + + +P PEP E AP PE A E PA +
Sbjct: 38 APPPAPPLLSEASPEPIPEPCPELAPGPCPEATSESATELYTEPTPEPATEPASEPAPEP 97
Query: 129 TNEELPE-ITE-VPESIKRRLGRRVPAATPAP 158
E PE TE PE P TP P
Sbjct: 98 ATEPAPEPATEPAPEPAPEPATESAPEPTPEP 129
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 31/107 (28%)
Query: 83 EAQTLAPGPCA--------EVRALPA----PAAEPEPAWEE----------APPERALEL 120
E + APGP A E A PA PAA EP+ EE AP + +
Sbjct: 105 EQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKS 164
Query: 121 EGAPAKDQ---------TNEELPEITEVPESIKRRLGRRVPAATPAP 158
+GAPA D +++E P TE P S + G A P P
Sbjct: 165 DGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKP 211
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 88 APGPCAEVRALPAPAAEPEPAWEEAP-PERALELEGAPA 125
AP P + + PAPA E EPA E+ P P + LELE APA
Sbjct: 318 APEPAVGLESAPAPALELEPAPEQDPAPSQTLELEPAPA 356
Score = 36.2 bits (82), Expect = 0.017
Identities = 47/161 (29%), Positives = 55/161 (34%), Gaps = 51/161 (31%)
Query: 45 IQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPAPAAE 104
I+ ++L A + TPE+ L L AP P +PAPA E
Sbjct: 254 IEAEPEALSPVPALKPTPELELAL---------------TPARAPSP------VPAPAPE 292
Query: 105 PEPAWEEAP-----------------PERALELEGAPAKDQTNEELPEITEVPESIKRRL 147
PEPA AP PE A+ LE APA E PE P
Sbjct: 293 PEPAPTPAPGSELEVAPAPAPELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQTL--- 349
Query: 148 GRRVPAATPAPRGNLLLQAWMRVHSWASRLFAPNVLPGTGP 188
PA P P LQ SW S + A N L P
Sbjct: 350 -ELEPAPAPVPS----LQP-----SWPSPVVAENGLSEEKP 380
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 88 APGPCAEVRALPAPAAEPEPAWEEAP-PERALELEGAPA 125
AP P + + PAPA E EPA E+ P P + LELE APA
Sbjct: 263 APEPAVGLESAPAPALELEPAPEQDPAPSQTLELEPAPA 301
Score = 36.2 bits (82), Expect = 0.017
Identities = 47/161 (29%), Positives = 55/161 (34%), Gaps = 51/161 (31%)
Query: 45 IQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPAPAAE 104
I+ ++L A + TPE+ L L AP P +PAPA E
Sbjct: 199 IEAEPEALSPVPALKPTPELELAL---------------TPARAPSP------VPAPAPE 237
Query: 105 PEPAWEEAP-----------------PERALELEGAPAKDQTNEELPEITEVPESIKRRL 147
PEPA AP PE A+ LE APA E PE P
Sbjct: 238 PEPAPTPAPGSELEVAPAPAPELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQTL--- 294
Query: 148 GRRVPAATPAPRGNLLLQAWMRVHSWASRLFAPNVLPGTGP 188
PA P P LQ SW S + A N L P
Sbjct: 295 -ELEPAPAPVPS----LQP-----SWPSPVVAENGLSEEKP 325
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 35.8 bits (81), Expect = 0.022
Identities = 47/146 (32%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 45 IQVPQDSLGQALAGQATPEI-PLGLQLHTVLVQEIQELIEAQTL----APGPCAEVRALP 99
+Q PQ L Q + PE+ P G V + QE + L APG E P
Sbjct: 271 VQNPQ--LLQTVWHYEVPELLPEGSSAQAVSLSRAQEPAQPPALTPESAPGCTTEFAPGP 328
Query: 100 APAAEPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKRR---LGR-RVPAAT 155
AP EP P E LELE PA +P + P S+ LG P A
Sbjct: 329 APGTEPVPGL-----ELGLELEPVPALG----PVPGPSVTPGSLPAPWPVLGPVPAPGAQ 379
Query: 156 PAPRGNL--------LLQAWMRVHSW 173
P P G+ L Q W RV SW
Sbjct: 380 PPPLGDWPALPRRWPLPQGWPRVGSW 405
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 35.4 bits (80), Expect = 0.029
Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 86 TLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELE--GAPAKDQTNEELPEITEVPESI 143
T P P PAPA P PA A + E E PA + PE E +
Sbjct: 502 TAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVEDM 561
Query: 144 KRRLGRRVPAATPAP 158
RR R PA P
Sbjct: 562 ARRTKRPAPARPTMP 576
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 35.0 bits (79), Expect = 0.038
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 29 RLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLA 88
RL P P L+ ++ + ++ + + P L HTV + E ++ ++ L
Sbjct: 312 RLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLE 371
Query: 89 PGPCAEVRALPAPAA---EPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKR 145
P + P PA P P A PE L GAP+ +L ++E E K
Sbjct: 372 PEVESSPELAPPPACPSESPVPIAPTAQPEEL--LNGAPSPPAV--DLSPVSEPEEQAKE 427
Query: 146 RLGR----RVPAATPA 157
+P+ATPA
Sbjct: 428 VTASMAPPTIPSATPA 443
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 35.0 bits (79), Expect = 0.038
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 29 RLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLA 88
RL P P L+ ++ + ++ + + P L HTV + E ++ ++ L
Sbjct: 225 RLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLE 284
Query: 89 PGPCAEVRALPAPAA---EPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKR 145
P + P PA P P A PE L GAP+ +L ++E E K
Sbjct: 285 PEVESSPELAPPPACPSESPVPIAPTAQPEEL--LNGAPSPPAV--DLSPVSEPEEQAKE 340
Query: 146 RLGR----RVPAATPA 157
+P+ATPA
Sbjct: 341 VTASMAPPTIPSATPA 356
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 35.0 bits (79), Expect = 0.038
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 29 RLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLA 88
RL P P L+ ++ + ++ + + P L HTV + E ++ ++ L
Sbjct: 148 RLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLE 207
Query: 89 PGPCAEVRALPAPAA---EPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKR 145
P + P PA P P A PE L GAP+ +L ++E E K
Sbjct: 208 PEVESSPELAPPPACPSESPVPIAPTAQPEEL--LNGAPSPPAV--DLSPVSEPEEQAKE 263
Query: 146 RLGR----RVPAATPA 157
+P+ATPA
Sbjct: 264 VTASMAPPTIPSATPA 279
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 35.0 bits (79), Expect = 0.038
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 29 RLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLA 88
RL P P L+ ++ + ++ + + P L HTV + E ++ ++ L
Sbjct: 312 RLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLE 371
Query: 89 PGPCAEVRALPAPAA---EPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKR 145
P + P PA P P A PE L GAP+ +L ++E E K
Sbjct: 372 PEVESSPELAPPPACPSESPVPIAPTAQPEEL--LNGAPSPPAV--DLSPVSEPEEQAKE 427
Query: 146 RLGR----RVPAATPA 157
+P+ATPA
Sbjct: 428 VTASMAPPTIPSATPA 443
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 35.0 bits (79), Expect = 0.038
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 29 RLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLVQEIQELIEAQTLA 88
RL P P L+ ++ + ++ + + P L HTV + E ++ ++ L
Sbjct: 116 RLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLE 175
Query: 89 PGPCAEVRALPAPAA---EPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKR 145
P + P PA P P A PE L GAP+ +L ++E E K
Sbjct: 176 PEVESSPELAPPPACPSESPVPIAPTAQPEEL--LNGAPSPPAV--DLSPVSEPEEQAKE 231
Query: 146 RLGR----RVPAATPA 157
+P+ATPA
Sbjct: 232 VTASMAPPTIPSATPA 247
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 35.0 bits (79), Expect = 0.038
Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 33 HPRRLSPVVIRRIQVPQDSLG-------------QALAGQATPEIPLGLQLHTVLVQE-I 78
HP + + R+ P LG L P +P L T + +
Sbjct: 332 HPNQPPMMTCERLPCPTAGLGPLREEAMKPGAASSPLQQVPAPPLPAKKNLPTAPPRRRV 391
Query: 79 QELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPEITE 138
E + + +PG AE L P E+ P E + + K +PE+
Sbjct: 392 SERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMPELPR 451
Query: 139 ------VPESIKRRLGRRVPAATPAPRGN 161
VP K+R+ R++ + PAP N
Sbjct: 452 TAKQPPVPPPRKKRISRQLASTLPAPLEN 480
>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 34.3 bits (77), Expect = 0.065
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 16 NGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLV 75
+ G+ R+ R R P PR + +R V + G Q +P PL H
Sbjct: 79 SAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRT--GGPAPAQPSPPGPLPPTPHGPHA 136
Query: 76 QEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPE 135
+ A+T A + LP PA + E AW ERA E ++ E E
Sbjct: 137 R-------AETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAE----DKEEVAVENKKE 185
Query: 136 ITEVPESIKRRLGRRVPAATPAPRG 160
++ V RR G+ P P G
Sbjct: 186 LSAVCPDAGRRWGQARPDLHAIPAG 210
>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 34.3 bits (77), Expect = 0.065
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 16 NGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLV 75
+ G+ R+ R R P PR + +R V + G Q +P PL H
Sbjct: 79 SAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRT--GGPAPAQPSPPGPLPPTPHGPHA 136
Query: 76 QEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPE 135
+ A+T A + LP PA + E AW ERA E ++ E E
Sbjct: 137 R-------AETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAE----DKEEVAVENKKE 185
Query: 136 ITEVPESIKRRLGRRVPAATPAPRG 160
++ V RR G+ P P G
Sbjct: 186 LSAVCPDAGRRWGQARPDLHAIPAG 210
>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
sapiens]
Length = 284
Score = 34.3 bits (77), Expect = 0.065
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 16 NGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQDSLGQALAGQATPEIPLGLQLHTVLV 75
+ G+ R+ R R P PR + +R V + G Q +P PL H
Sbjct: 79 SAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRT--GGPAPAQPSPPGPLPPTPHGPHA 136
Query: 76 QEIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPE 135
+ A+T A + LP PA + E AW ERA E ++ E E
Sbjct: 137 R-------AETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAE----DKEEVAVENKKE 185
Query: 136 ITEVPESIKRRLGRRVPAATPAPRG 160
++ V RR G+ P P G
Sbjct: 186 LSAVCPDAGRRWGQARPDLHAIPAG 210
>gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo sapiens]
Length = 600
Score = 33.9 bits (76), Expect = 0.085
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 84 AQTLAPGPCAEVRALPAPAAEPEPAWEEAP--PERALELEGAPAKDQTNEELPEI-TEVP 140
A+T GP + PAP + EP+ +P P R +L P D+T +PE T P
Sbjct: 67 AKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQ-DLAAPPQSDRTTSVIPEAGTPYP 125
Query: 141 ESIKRRLGRR--VPAATPAPRGNLLLQA 166
+ +++ +R P T GN Q+
Sbjct: 126 DPLEQSSDKRESTPHHTSQSEGNTFQQS 153
>gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo sapiens]
Length = 716
Score = 33.9 bits (76), Expect = 0.085
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 84 AQTLAPGPCAEVRALPAPAAEPEPAWEEAP--PERALELEGAPAKDQTNEELPEI-TEVP 140
A+T GP + PAP + EP+ +P P R +L P D+T +PE T P
Sbjct: 67 AKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQ-DLAAPPQSDRTTSVIPEAGTPYP 125
Query: 141 ESIKRRLGRR--VPAATPAPRGNLLLQA 166
+ +++ +R P T GN Q+
Sbjct: 126 DPLEQSSDKRESTPHHTSQSEGNTFQQS 153
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 98 LPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPA 157
+PA EP W E L P ++ P V + + VPA PA
Sbjct: 125 MPAHLRREEPVWLEGTKLCCQPLPTTPGRE------PGFVCVDVGLSKPAEPPVPARDPA 178
Query: 158 PRGNLLLQAWMRVHSW 173
PR L + W R W
Sbjct: 179 PRRGRLARCWARCRDW 194
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 98 LPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPA 157
+PA EP W E L P ++ P V + + VPA PA
Sbjct: 125 MPAHLRREEPVWLEGTKLCCQPLPTTPGRE------PGFVCVDVGLSKPAEPPVPARDPA 178
Query: 158 PRGNLLLQAWMRVHSW 173
PR L + W R W
Sbjct: 179 PRRGRLARCWARCRDW 194
>gi|23957680 ral guanine nucleotide dissociation stimulator-like 4
[Homo sapiens]
Length = 473
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 88 APGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAP---------AKDQTNEELPEITE 138
A GP + + P PA P E PP LE + AP K+Q +EELP++T
Sbjct: 161 ALGPPGYLHSAPGPAPAPG---EGPPPGTVLEPQSAPESSCPCRGSVKNQPSEELPDMTT 217
Query: 139 VP 140
P
Sbjct: 218 FP 219
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.1 bits (74), Expect = 0.14
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 3 SCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQ-DSLGQALAGQAT 61
S + C + G + C R L HP + P++ R + + G+A T
Sbjct: 487 SILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKT 546
Query: 62 P-EIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPA-PAAEPEPAWEEAPPERALE 119
+I GLQL V + ++ + P ++ +PA PA+ P AW A E
Sbjct: 547 VLQIDCGLQLANDSVNRLSRIL-MELDGPNWREKLSPIPAVPASVPLQAWHPAK-----E 600
Query: 120 LEGAPAKDQTNEELPEITE 138
+ A D ++ IT+
Sbjct: 601 MISKQAGDSSSHRQQGITD 619
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.1 bits (74), Expect = 0.14
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 3 SCCFPTSRGCCFRNGGSESLFRRCRRRLIPHPRRLSPVVIRRIQVPQ-DSLGQALAGQAT 61
S + C + G + C R L HP + P++ R + + G+A T
Sbjct: 487 SILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKT 546
Query: 62 P-EIPLGLQLHTVLVQEIQELIEAQTLAPGPCAEVRALPA-PAAEPEPAWEEAPPERALE 119
+I GLQL V + ++ + P ++ +PA PA+ P AW A E
Sbjct: 547 VLQIDCGLQLANDSVNRLSRIL-MELDGPNWREKLSPIPAVPASVPLQAWHPAK-----E 600
Query: 120 LEGAPAKDQTNEELPEITE 138
+ A D ++ IT+
Sbjct: 601 MISKQAGDSSSHRQQGITD 619
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 32.7 bits (73), Expect = 0.19
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 106 EPAWEEAPPERALELEGAPAKDQTNEELPEITEVPESIKRRLGRRVPAATPAPRGNLLLQ 165
+PA E PP + +E P + ++PE T+VPE IK + P P P +
Sbjct: 10974 KPAVPEPPPPKPVEEVEVPTVTKRERKIPEPTKVPE-IKPAIPLPAPEPKPKPEAEVKTI 11032
Query: 166 AWMRVHSWASRLFAPNVLPGTG 187
V + + AP +P G
Sbjct: 11033 KPPPVEPEPTPIAAPVTVPVVG 11054
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Query: 77 EIQELIEAQTLAPGPCAEVRALPAPAAEPEPAWEEAPPERALELEGAPAKDQTNEELPEI 136
E +++IE L P P P P A P+ E E+ +L+ P K ++PE
Sbjct: 10867 EPEKVIEKPKLKPRPP------PPPPAPPK----EDVKEKIFQLKAIPKK-----KVPEK 10911
Query: 137 TEVPESI----------KRRLGRRVPAATPAPRGNLLLQAWMR 169
+VPE + ++++ + +P P P+ ++L++ +R
Sbjct: 10912 PQVPEKVELTPLKVPGGEKKVRKLLPERKPEPKEEVVLKSVLR 10954
Score = 27.3 bits (59), Expect = 7.9
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 94 EVRALPAP--AAEPEPAWEEAPPERALELEGAPAKDQ----TNEELPEI--TEVPESIKR 145
E A+P P A P P E P E A E E AP +++ EE PE+ VPE K+
Sbjct: 10786 EKPAVPVPERAESPPPEVYEEPEEIAPEEEIAPEEEKPVPVAEEEEPEVPPPAVPEEPKK 10845
Score = 27.3 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 89 PGPCAEVRALPAPAAEPEPAWEEAP---PERALELEGAPAKDQTNEELPEITEVPE 141
P P AEV+ + P EPEP AP P + E K++ + I VP+
Sbjct: 11023 PKPEAEVKTIKPPPVEPEPTPIAAPVTVPVVGKKAEAKAPKEEAAKPKGPIKGVPK 11078
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,561
Number of Sequences: 37866
Number of extensions: 544027
Number of successful extensions: 3401
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 3095
Number of HSP's gapped (non-prelim): 391
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.