Guide to the Human Genome
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Name: LOC401934 Sequence: fasta or formatted (249aa) NCBI GI: 239747208
Description:

PREDICTED: hypothetical protein

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [249aa] PREDICTED: hypothetical protein
alt mRNA [249aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         27           3
 C cysteine            6.4         16           2
 D aspartate           2.0          5           1
 E glutamate           4.0         10           2
 F phenylalanine       2.4          6           1
 G glycine             6.4         16           2
 H histidine           1.2          3           1
 I isoleucine          1.2          3           1
 K lysine              2.0          5           1
 L leucine            10.0         25           3
 M methionine          2.0          5           1
 N asparagine          1.2          3           1
 P proline            15.3         38           3
 Q glutamine           3.2          8           2
 R arginine            9.6         24           2
 S serine              8.4         21           3
 T threonine           5.2         13           2
 V valine              6.0         15           1
 W tryptophan          2.0          5           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC401934             1.000   PREDICTED: hypothetical protein 
LOC401934             0.996   PREDICTED: hypothetical protein 
LOC646862             0.160   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.160   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.160   PREDICTED: hypothetical protein LOC646862 
RNF183                0.099   ring finger protein 183 
TRIM59                0.055   tripartite motif-containing 59 
TRIM56                0.048   tripartite motif-containing 56 
TRIM3                 0.048   tripartite motif-containing 3 
TRIM3                 0.048   tripartite motif-containing 3 
RNF152                0.048   ring finger protein 152 
NHLRC1                0.048   NHL repeat containing 1 
RNF208                0.048   ring finger protein 208 
RNF182                0.046   ring finger protein 182 
TRIM2                 0.044   tripartite motif-containing 2 isoform 2 
TRIM2                 0.044   tripartite motif-containing 2 isoform 1 
TRIM4                 0.044   tripartite motif protein TRIM4 isoform alpha 
TRIM4                 0.044   tripartite motif protein TRIM4 isoform beta 
RNF222                0.042   ring finger protein 222 
RNF222                0.042   PREDICTED: ring finger protein 222 
RNF222                0.042   PREDICTED: ring finger protein 222 
RNF222                0.042   PREDICTED: ring finger protein 222 
RNF186                0.042   ring finger protein 186 
TRIM32                0.040   tripartite motif-containing 32 
TRIM32                0.040   tripartite motif-containing 32 
TRIM7                 0.040   tripartite motif-containing 7 isoform 1 
TRIM7                 0.040   tripartite motif-containing 7 isoform 4 
TRIM33                0.038   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.038   tripartite motif-containing 33 protein isoform alpha...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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