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Search of human proteins with 13430854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
(626 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 1282 0.0
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 1282 0.0
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 1282 0.0
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 720 0.0
gi|254039592 nuclear RNA export factor 5 [Homo sapiens] 610 e-175
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 545 e-155
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens] 363 e-100
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 42 0.002
gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isofo... 37 0.055
gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isofor... 37 0.055
gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isofo... 37 0.055
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 36 0.12
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 36 0.12
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 36 0.12
gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens] 35 0.16
gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens] 35 0.16
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 35 0.27
gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens] 34 0.35
gi|11321571 slit homolog 3 [Homo sapiens] 34 0.46
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom... 33 0.60
gi|4826876 osteomodulin [Homo sapiens] 33 0.60
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens] 33 0.79
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens] 33 0.79
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 33 1.0
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 33 1.0
gi|66472382 nischarin [Homo sapiens] 32 1.3
gi|4503743 flightless I homolog [Homo sapiens] 32 2.3
gi|5901992 keratocan [Homo sapiens] 32 2.3
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 32 2.3
gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens] 32 2.3
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 1282 bits (3318), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
Query: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 1282 bits (3318), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
Query: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 1282 bits (3318), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1 MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
Query: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61 NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 720 bits (1858), Expect = 0.0
Identities = 358/598 (59%), Positives = 452/598 (75%), Gaps = 1/598 (0%)
Query: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Query: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
LWL+GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ T+ PCK ++ G
Sbjct: 320 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFG 379
Query: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
+E LK LVL FLQQYY+IYDSGDRQGLL AYHD AC SL+IPF P++ A SSL +YF+DS
Sbjct: 380 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439
Query: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
RN+K LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVF
Sbjct: 440 RNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 499
Query: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
KEV+G+S+ S+ AFTRTFIA P S+S LCIVNDELFVR+AS +E Q AF++P T SSS
Sbjct: 500 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 559
Query: 565 EPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
P+LS EQQEM+QAFS QSGM LEWSQKCLQDN W+YTR+ QAFT L+ +G+IP AF
Sbjct: 560 VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617
>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
Length = 365
Score = 610 bits (1574), Expect = e-175
Identities = 314/382 (82%), Positives = 327/382 (85%), Gaps = 37/382 (9%)
Query: 112 MSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDA 171
M +NTQD R WFKVTIPYGIKYDKAWLMNSIQS+CS FTPVDFHY+RNRACFFVQ A
Sbjct: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
Query: 172 SAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 231
SAASALKDVSYKIYDDENQKICIFV+H TAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
Query: 232 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI 291
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI ERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
Query: 292 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 351
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
Query: 352 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGL 411
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ
Sbjct: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
Query: 412 LGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTK-RDIVDS 470
S+LCKYF+DSRN+K LKDPYL+ +LL+ TK VDS
Sbjct: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
Query: 471 LSALPKTQHDLSSILVDVWCQT 492
LSALP+TQHD +SILVD+W QT
Sbjct: 325 LSALPETQHDFTSILVDMWYQT 346
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 545 bits (1403), Expect = e-155
Identities = 290/552 (52%), Positives = 373/552 (67%), Gaps = 40/552 (7%)
Query: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIR- 84
Q R + ++ F RS G + SH Q+ DG M H D +R+TPY+I
Sbjct: 17 QRRARCWDIYQRRFSSRSEPVNPGMHSS--SH-QQQDGDAAMHGAHMDSPVRYTPYTISP 73
Query: 85 CERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
R+ + +D+ + R +KPPER+M N DG +WFK+T+P+GIKY++ WL+N I
Sbjct: 74 YNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLI 133
Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Q+ CS F PV+FHY A FFV++AS A ALK+VS KI+D++N+KI IFVN + P+
Sbjct: 134 QNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF 193
Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
V +LK ++E +KL MN++ +VSQ+ALD+Q L F PD++ RD + N R CMAA+L +
Sbjct: 194 VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDV 253
Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
E N P ++S A E+ K KG++ E
Sbjct: 254 HEENIPTVMS------------------------------------AGEMDKWKGIEPGE 277
Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
+ +P+C+TFSD S+ +++I + FPKLL LDG++ + ++ + + CK +F G
Sbjct: 278 KCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFG 337
Query: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
SE LK+LVLQFLQQYY IYDSGDRQGLL AYHDEACFSL+IPF+P+DSAPSS CK+F+DS
Sbjct: 338 SEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDS 397
Query: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
RN+K LKDPYL+GELL+ TK DIVDSLSALPKTQHDLSS LVD+W QTE MLCFSVNGVF
Sbjct: 398 RNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVF 457
Query: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND+LFVRD S Q TQSA V T SSS
Sbjct: 458 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSS 517
Query: 565 EPSLSQEQQEMV 576
P+ SQEQQ+M+
Sbjct: 518 VPAFSQEQQKML 529
>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
Length = 356
Score = 363 bits (932), Expect = e-100
Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 1/325 (0%)
Query: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Query: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDC 349
LWL+GN LC TF DQS Y+ ++ C
Sbjct: 320 LWLDGNSLCDTFRDQSTYIRSVVAC 344
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 42.0 bits (97), Expect = 0.002
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 252 LNRRNCMAATLKIIE--RNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE 309
+ + NC + L I + P L + L N + L+ +S + ++ L L +N++
Sbjct: 20 VRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVS----RCQRLSELYLRRNRIP 75
Query: 310 SAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELS 362
S EL +KGL +L LWL NP C T Y + P+L +LD + ++
Sbjct: 76 SLAELFYLKGLPRLRVLWLAENPCCGT--SPHRYRMTVLRTLPRLQKLDNQAVT 127
>gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isoform
1 [Homo sapiens]
Length = 790
Score = 37.0 bits (84), Expect = 0.055
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153
>gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isoform 2
[Homo sapiens]
Length = 796
Score = 37.0 bits (84), Expect = 0.055
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153
>gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isoform
3 [Homo sapiens]
Length = 760
Score = 37.0 bits (84), Expect = 0.055
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
P++ LNLS N LES +W+ V+GL L+EL L GNPL CS
Sbjct: 85 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 123
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 35.8 bits (81), Expect = 0.12
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK-LEELWLE 328
P+L L L N+++ GL + EK P + LNLS NKL+ L +K L+ L+ L L
Sbjct: 64 PKLKKLELSENRIF--GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 121
Query: 329 GNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDS 371
C ++ + Y ++ P+L LDG + D D+
Sbjct: 122 N---CEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 160
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.12
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 254 RRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 294
R N + +TL I N P+L +L L N L +++GL D+ + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243
Query: 295 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 353
++ LNL N + + EL K++ L KL L L NP +D+++Y P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299
Query: 354 LRLD 357
RLD
Sbjct: 300 ERLD 303
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
P L + N++ +G+S P+++TLNL N + L K + L + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188
Query: 330 NPLCST 335
N L ST
Sbjct: 189 NQLEST 194
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.12
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 254 RRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 294
R N + +TL I N P+L +L L N L +++GL D+ + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243
Query: 295 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 353
++ LNL N + + EL K++ L KL L L NP +D+++Y P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299
Query: 354 LRLD 357
RLD
Sbjct: 300 ERLD 303
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
P L + N++ +G+S P+++TLNL N + L K + L + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188
Query: 330 NPLCST 335
N L ST
Sbjct: 189 NQLEST 194
>gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens]
Length = 236
Score = 35.4 bits (80), Expect = 0.16
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
+K +++ E Y R + + ++ EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
>gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens]
Length = 248
Score = 35.4 bits (80), Expect = 0.16
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
+K +++ E Y R + + ++ EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 34.7 bits (78), Expect = 0.27
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLES 310
P+L SLNL N+L +L +D+ AP++++LNL+ N L+S
Sbjct: 129 PQLQSLNLSGNRLRELP--ADLARCAPRLQSLNLTGNCLDS 167
>gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]
Length = 218
Score = 34.3 bits (77), Expect = 0.35
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
+K +++ E Y R + + + EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRAAEEAF 168
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 33.9 bits (76), Expect = 0.46
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 256 NCMAATLKIIERNFPELLS-LNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWEL 314
+C L I + PE ++ L L +N++ L+ + I +K P ++ +NLS NK++ E
Sbjct: 517 DCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEA-TGIFKKLPNLRKINLSNNKIKEVREG 575
Query: 315 GKVKGLKLEELWLEGNPL 332
++EL L GN L
Sbjct: 576 AFDGAASVQELMLTGNQL 593
Score = 32.3 bits (72), Expect = 1.3
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 249 DIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQL-DGLSDITEKAPKVKTLNLSKNK 307
D+ LN I + P L +NL NNK+ ++ +G D A V+ L L+ N+
Sbjct: 536 DLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFD---GAASVQELMLTGNQ 592
Query: 308 LESAWELGKV-KGLK-LEELWLEGNPLCSTFSDQSAYVSAIR 347
LE+ G+V +GL L+ L L N + +D A +S++R
Sbjct: 593 LETVH--GRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVR 632
>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
sapiens]
Length = 660
Score = 33.5 bits (75), Expect = 0.60
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 288 LSDITEKAPK-VKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAI 346
L + PK V+ L+L +N +++ + LKLEEL L+ N + + + A+ AI
Sbjct: 100 LDEFPMNLPKNVRVLHLQENNIQTISRAALAQLLKLEELHLDDNSISTVGVEDGAFREAI 159
Query: 347 RDCFPKLLRLDGRELSA-PVIVDIDSSE 373
KLL L LS+ PV + +D E
Sbjct: 160 S---LKLLFLSKNHLSSVPVGLPVDLQE 184
>gi|4826876 osteomodulin [Homo sapiens]
Length = 421
Score = 33.5 bits (75), Expect = 0.60
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 226 NVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQL 285
N+ Q L+ NL P + + ++ +L N ++ L L+LC N L+
Sbjct: 142 NLLQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDS 201
Query: 286 DGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL--KLEELWLEGNPLCS---TFSDQS 340
I K K+ LNL N+LES GL L L LE N + S + D+
Sbjct: 202 LLKDKIFAKMEKLMQLNLCSNRLES-----MPPGLPSSLMYLSLENNSISSIPEKYFDKL 256
Query: 341 AYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQ 394
+ +R KL + + P IV++ S K+ F L+HL LQ
Sbjct: 257 PKLHTLRMSHNKLQDIPYNIFNLPNIVEL--SVGHNKLKQAFYIPRNLEHLYLQ 308
>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
Length = 1227
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 199 STAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRR--N 256
S PY V+ ++ ++E + Y VS A D+Q L+ D+ +D+ ++++ N
Sbjct: 1021 SKVPYIVRQCVE--EIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVN 1078
Query: 257 CMAATLKIIERNFPELL 273
+A TLK+ R PE L
Sbjct: 1079 AIAGTLKLYFRELPEPL 1095
>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
Length = 1271
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 199 STAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRR--N 256
S PY V+ ++ ++E + Y VS A D+Q L+ D+ +D+ ++++ N
Sbjct: 1065 SKVPYIVRQCVE--EIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVN 1122
Query: 257 CMAATLKIIERNFPELL 273
+A TLK+ R PE L
Sbjct: 1123 AIAGTLKLYFRELPEPL 1139
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 396 LQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFD-------PKDSAPSSLCKYFEDSRNMK 448
LQ+ +S++D + LLG + + ++ KD+ P F+ S N+
Sbjct: 264 LQELWSLFDFACQGSLLGTLK-----TFKMEYENPITRAREKDATPGEKALGFKISENLM 318
Query: 449 TLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQ 491
+ PY LRRTK D+ S+ P+ + + + VD C+
Sbjct: 319 AIIKPYF----LRRTKEDVQKKKSSNPEARLNEKNPDVDAICE 357
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 297 KVKTLNLSKNKLESAWELGKVKGLK-LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 355
K+K L +S N ++ E K+ L LE+L GNPL S ++ ++ PKL +
Sbjct: 116 KLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKK 175
Query: 356 LDG 358
LDG
Sbjct: 176 LDG 178
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 32.3 bits (72), Expect = 1.3
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 272 LLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL 320
L+ L+L NKL L+GL K +KTLNL+ N LES L K+ L
Sbjct: 334 LVHLDLSYNKLSSLEGLHT---KLGNIKTLNLAGNLLESLSGLHKLYSL 379
>gi|4503743 flightless I homolog [Homo sapiens]
Length = 1269
Score = 31.6 bits (70), Expect = 2.3
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
P L LNL +N Q+ LS ++ V+TLNLS+N+L S K KL++L+L
Sbjct: 246 PSLRRLNLSSN---QITELSLCIDQWVHVETLNLSRNQLTSL-PSAICKLSKLKKLYLNS 301
Query: 330 NPL 332
N L
Sbjct: 302 NKL 304
>gi|5901992 keratocan [Homo sapiens]
Length = 352
Score = 31.6 bits (70), Expect = 2.3
Identities = 53/200 (26%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 211 PGQMEMLKLTMNKRYNVSQQA---------LDLQNLRFDPDLMGRDIDIILNRRNCMAAT 261
P +E L+L NK + Q LDLQN + + RD +N M
Sbjct: 141 PRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQNNKLVDNAFQRDT--FKGLKNLMQLN 198
Query: 262 L-KIIERNFPELLSLN-----LCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE------ 309
+ K RN P L N L NN + + + PKV L L+ NKL
Sbjct: 199 MAKNALRNMPPRLPANTMQLFLDNNSIEGIP--ENYFNVIPKVAFLRLNHNKLSDEGLPS 256
Query: 310 -------------SAWELGKVKGLK--LEELWLEGNPL----CSTFSDQSAYVSAIRDCF 350
S +L KV + L+ L L+ N + S + + A RD F
Sbjct: 257 RGFDVSSILDLQLSHNQLTKVPRISAHLQHLHLDHNKIKSVNVSVICPSPSMLPAERDSF 316
Query: 351 P-----KLLRLDGRELSAPV 365
+ LRLDG E+ P+
Sbjct: 317 SYGPHLRYLRLDGNEIKPPI 336
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 249 DIILNRRNCMAATLKIIERNFPELLSLNLCN------------NKLYQLD--------GL 288
+++L+ C+ ++ + F EL L++ N NKL +L+ GL
Sbjct: 21 ELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGL 80
Query: 289 SDITEKAPKVKTLNLSKNKLESAWELGKVKGLK 321
+ EK P + LNLS NK++ + ++ LK
Sbjct: 81 EVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLK 113
>gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 2015
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 256 NCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITE-KAPKVKTLNLSKNKLESAWEL 314
NC+A +I L LNL +N L +L G+ E ++ +++S NKL S
Sbjct: 288 NCLATLPSVIPWGLINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKL-SHLPP 346
Query: 315 GKVKGLKLEELWLEGNPLCSTFSDQSA 341
G + KL++L N L F +++A
Sbjct: 347 GFLHLSKLQKLTASKNCLEKLFEEENA 373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,322,066
Number of Sequences: 37866
Number of extensions: 1087612
Number of successful extensions: 2764
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2713
Number of HSP's gapped (non-prelim): 79
length of query: 626
length of database: 18,247,518
effective HSP length: 108
effective length of query: 518
effective length of database: 14,157,990
effective search space: 7333838820
effective search space used: 7333838820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.