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Search of human proteins with 134254462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134254462 ribosomal modification protein rimK-like family
member B [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134254462 ribosomal modification protein rimK-like family mem... 771 0.0
gi|164663810 ribosomal modification protein rimK-like family mem... 530 e-150
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 7e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 7e-04
gi|19924103 synapsin II isoform IIa [Homo sapiens] 39 0.008
gi|19924101 synapsin II isoform IIb [Homo sapiens] 39 0.008
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 38 0.018
gi|195947361 histidine acid phosphatase domain containing 2A iso... 35 0.11
gi|195947359 histidine acid phosphatase domain containing 2A iso... 35 0.11
gi|66932994 histidine acid phosphatase domain containing 2A isof... 35 0.11
gi|66932992 histidine acid phosphatase domain containing 2A isof... 35 0.11
gi|38679977 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo ... 35 0.15
gi|38679974 acetyl-Coenzyme A carboxylase alpha isoform 4 [Homo ... 35 0.15
gi|38679971 acetyl-Coenzyme A carboxylase alpha isoform 3 [Homo ... 35 0.15
gi|38679967 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo ... 35 0.15
gi|38679960 acetyl-Coenzyme A carboxylase alpha isoform 1 [Homo ... 35 0.15
gi|41281583 Histidine acid phosphatase domain containing 1 [Homo... 35 0.15
gi|116805327 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) pr... 35 0.15
gi|188497750 hexokinase 1 isoform HKI-td [Homo sapiens] 33 0.33
gi|188497754 hexokinase 1 isoform HKI [Homo sapiens] 33 0.33
gi|15991829 hexokinase 1 isoform HKI-ta/tb [Homo sapiens] 33 0.33
gi|15991831 hexokinase 1 isoform HKI-ta/tb [Homo sapiens] 33 0.33
gi|15991827 hexokinase 1 isoform HKI-R [Homo sapiens] 33 0.33
gi|15553127 hexokinase 2 [Homo sapiens] 33 0.43
gi|39777594 solute carrier organic anion transporter family memb... 32 0.74
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 30 3.7
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 30 3.7
gi|39979638 family with sequence similarity 5, member C [Homo sa... 30 3.7
gi|19923477 NEDD8 ultimate buster-1 [Homo sapiens] 29 6.3
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 29 8.2
>gi|134254462 ribosomal modification protein rimK-like family member
B [Homo sapiens]
Length = 386
Score = 771 bits (1992), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL 60
MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL
Sbjct: 1 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL 60
Query: 61 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ 120
RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ
Sbjct: 61 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ 120
Query: 121 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL 180
ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL
Sbjct: 121 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL 180
Query: 181 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS 240
SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS
Sbjct: 181 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS 240
Query: 241 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA 300
LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA
Sbjct: 241 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA 300
Query: 301 DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTER 360
DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTER
Sbjct: 301 DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTER 360
Query: 361 ELLTKLPGGLFNMNQLLANEIKLLVD 386
ELLTKLPGGLFNMNQLLANEIKLLVD
Sbjct: 361 ELLTKLPGGLFNMNQLLANEIKLLVD 386
>gi|164663810 ribosomal modification protein rimK-like family member
A [Homo sapiens]
Length = 391
Score = 530 bits (1364), Expect = e-150
Identities = 262/395 (66%), Positives = 326/395 (82%), Gaps = 17/395 (4%)
Query: 1 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL 60
MCS +LWFLTDRRIREDYPQ +ILRAL+ +C E+++ FRAV+MD++ +TI G+LGL
Sbjct: 1 MCS----QLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGHLGL 56
Query: 61 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ 120
++N + +T +P VV+VRVPTP VQSDSDITVLRHLEK+GCRL+NRPQ+ILNC+NKFWTFQ
Sbjct: 57 QLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQ 116
Query: 121 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL 180
ELAGHGVP+PDTFSYGGHE+F+KMIDEAE L +P+VVK+TRGHRGKAVFLARDKHHL+D+
Sbjct: 117 ELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDI 176
Query: 181 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS 240
HLIRH+ PYLFQKYVKESHG+D+RV+VVGG+V+G+MLRCSTDGRMQSNCSLGGVG+ C
Sbjct: 177 CHLIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVKCP 236
Query: 241 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA 300
L+EQGKQLAIQVSNILGMD CGIDLL+ DDGSF VCEANANVGF+AFD+ACNLDV GIIA
Sbjct: 237 LTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGGIIA 296
Query: 301 DYAASLLPSGRLTRRMSLLSVVSTASETSEPE---LGPPASTAVDNMSASSSSVDSDPE- 356
DY SLLP+ R T +M++L +S+ E +EP+ + +V +++ S+S +S+PE
Sbjct: 297 DYTMSLLPN-RQTGKMAVLPGLSSPREKNEPDGCASAQGVAESVYTINSGSTSSESEPEL 355
Query: 357 --------STERELLTKLPGGLFNMNQLLANEIKL 383
ST + LP +N+N +A+E+KL
Sbjct: 356 GEIRDSSASTMGAPPSMLPEPGYNINNRIASELKL 390
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.4 bits (98), Expect = 7e-04
Identities = 60/278 (21%), Positives = 108/278 (38%), Gaps = 43/278 (15%)
Query: 20 DYPQKEILRALKAKCCEEELDFRAVVMDEVVLT-IEQGNLGLRINGELI--------TAY 70
D P + + K K E+D + + L + N G ++ E++ +
Sbjct: 120 DEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLK 179
Query: 71 PQVVVVRVPTPWVQSDSDI-TVLRHLEKMGCRLMNRPQAILNCVNKFWTF-------QEL 122
P V++R + + D +++ L+ G +N ++ N +K W F ++L
Sbjct: 180 PDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKL 239
Query: 123 AGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSH 182
PL D Y H+ +P+VVK H G ++H D++
Sbjct: 240 GTEEFPLIDQTFYPNHKEMLSSTT------YPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 293
Query: 183 LI------RHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVG 236
++ P++ KY DVRV +G M R S G ++N G
Sbjct: 294 VVALTKTYATAEPFIDAKY-------DVRVQKIGQNYKAYM-RTSVSGNWKTNT---GSA 342
Query: 237 MM--CSLSEQGKQLAIQVSNIL-GMDVCGIDLLMKDDG 271
M+ ++S++ K S I G+D+C ++ L DG
Sbjct: 343 MLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDG 380
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.4 bits (98), Expect = 7e-04
Identities = 60/278 (21%), Positives = 108/278 (38%), Gaps = 43/278 (15%)
Query: 20 DYPQKEILRALKAKCCEEELDFRAVVMDEVVLT-IEQGNLGLRINGELI--------TAY 70
D P + + K K E+D + + L + N G ++ E++ +
Sbjct: 120 DEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLK 179
Query: 71 PQVVVVRVPTPWVQSDSDI-TVLRHLEKMGCRLMNRPQAILNCVNKFWTF-------QEL 122
P V++R + + D +++ L+ G +N ++ N +K W F ++L
Sbjct: 180 PDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKL 239
Query: 123 AGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSH 182
PL D Y H+ +P+VVK H G ++H D++
Sbjct: 240 GTEEFPLIDQTFYPNHKEMLSSTT------YPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 293
Query: 183 LI------RHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVG 236
++ P++ KY DVRV +G M R S G ++N G
Sbjct: 294 VVALTKTYATAEPFIDAKY-------DVRVQKIGQNYKAYM-RTSVSGNWKTNT---GSA 342
Query: 237 MM--CSLSEQGKQLAIQVSNIL-GMDVCGIDLLMKDDG 271
M+ ++S++ K S I G+D+C ++ L DG
Sbjct: 343 MLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDG 380
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 38.9 bits (89), Expect = 0.008
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 71 PQVVVVRVPTPWVQSDSDITVLRHL----EKMGCRLMNRPQAILNCVNKFWTFQELA--- 123
P V++R + + D RHL + G +N ++I N +K W F +L
Sbjct: 180 PDFVLIRQHAFGMAENEDF---RHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIY 236
Query: 124 ----GHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLAD 179
G PL + Y H+ + FP+VVK H G + + D
Sbjct: 237 KTLGGEKFPLIEQTYYPNHKEMLTLPT------FPVVVKIGHAHSGMGKVKVENHYDFQD 290
Query: 180 LSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMM- 238
++ ++ Y + +S D+RV +G M R S G ++N G M+
Sbjct: 291 IASVVALTQTYATAEPFIDSK-YDIRVQKIGNNYKAYM-RTSISGNWKTNT---GSAMLE 345
Query: 239 -CSLSEQGKQLAIQVSNIL-GMDVCGIDLLMKDDGSFCVCE 277
++S++ K S + G+D+C + + DG + E
Sbjct: 346 QIAMSDRYKLWVDTCSEMFGGLDICAVKAVHGKDGKDYIFE 386
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 38.9 bits (89), Expect = 0.008
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 71 PQVVVVRVPTPWVQSDSDITVLRHL----EKMGCRLMNRPQAILNCVNKFWTFQELA--- 123
P V++R + + D RHL + G +N ++I N +K W F +L
Sbjct: 180 PDFVLIRQHAFGMAENEDF---RHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIY 236
Query: 124 ----GHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLAD 179
G PL + Y H+ + FP+VVK H G + + D
Sbjct: 237 KTLGGEKFPLIEQTYYPNHKEMLTLPT------FPVVVKIGHAHSGMGKVKVENHYDFQD 290
Query: 180 LSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMM- 238
++ ++ Y + +S D+RV +G M R S G ++N G M+
Sbjct: 291 IASVVALTQTYATAEPFIDSK-YDIRVQKIGNNYKAYM-RTSISGNWKTNT---GSAMLE 345
Query: 239 -CSLSEQGKQLAIQVSNIL-GMDVCGIDLLMKDDGSFCVCE 277
++S++ K S + G+D+C + + DG + E
Sbjct: 346 QIAMSDRYKLWVDTCSEMFGGLDICAVKAVHGKDGKDYIFE 386
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 37.7 bits (86), Expect = 0.018
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 117 WTFQELA-GHGVPLP-DTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDK 174
WT +L G + +P D + G ++ + ++ AE + FP+++K + G GK + A
Sbjct: 411 WTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESA 470
Query: 175 HHLADLSHLIRHE---APYLFQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSN 229
L ++ E +P K + + +V+++ G V R CS R Q
Sbjct: 471 EDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKI 530
Query: 230 CSLGGVGMM-CSLSEQGKQLAIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
+ ++ E +Q AI+++ +G G ++ L DGSF E N
Sbjct: 531 VEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELN 582
>gi|195947361 histidine acid phosphatase domain containing 2A
isoform 2 [Homo sapiens]
Length = 1408
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 184 IRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCST--DGRMQSNCSLGGVGMMCSL 241
+R Y++++++ + G DV+V VG R S DG+++ + + L
Sbjct: 239 VRKTGSYIYEEFMP-TDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVML 297
Query: 242 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEAN 279
+ K +A +V VCG DLL + SF VC+ N
Sbjct: 298 TAMEKLVARKVCVAFKQTVCGFDLLRANGHSF-VCDVN 334
>gi|195947359 histidine acid phosphatase domain containing 2A
isoform 5 [Homo sapiens]
Length = 1433
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 184 IRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCST--DGRMQSNCSLGGVGMMCSL 241
+R Y++++++ + G DV+V VG R S DG+++ + + L
Sbjct: 239 VRKTGSYIYEEFMP-TDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVML 297
Query: 242 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEAN 279
+ K +A +V VCG DLL + SF VC+ N
Sbjct: 298 TAMEKLVARKVCVAFKQTVCGFDLLRANGHSF-VCDVN 334
>gi|66932994 histidine acid phosphatase domain containing 2A isoform
4 [Homo sapiens]
Length = 1194
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 184 IRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCST--DGRMQSNCSLGGVGMMCSL 241
+R Y++++++ + G DV+V VG R S DG+++ + + L
Sbjct: 239 VRKTGSYIYEEFMP-TDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVML 297
Query: 242 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEAN 279
+ K +A +V VCG DLL + SF VC+ N
Sbjct: 298 TAMEKLVARKVCVAFKQTVCGFDLLRANGHSF-VCDVN 334
>gi|66932992 histidine acid phosphatase domain containing 2A isoform
2 [Homo sapiens]
Length = 1408
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 184 IRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCST--DGRMQSNCSLGGVGMMCSL 241
+R Y++++++ + G DV+V VG R S DG+++ + + L
Sbjct: 239 VRKTGSYIYEEFMP-TDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVML 297
Query: 242 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEAN 279
+ K +A +V VCG DLL + SF VC+ N
Sbjct: 298 TAMEKLVARKVCVAFKQTVCGFDLLRANGHSF-VCDVN 334
>gi|38679977 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo
sapiens]
Length = 2346
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 139 ENFAKMIDE----AEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHE---APYL 191
+ + K +D+ AE + +P+++K + G GK + + +L ++ E +P
Sbjct: 288 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 347
Query: 192 FQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSNCSLGGVGMMC-SLSEQGKQL 248
+ K+S +V+++ G + R CS R Q + ++ E +Q
Sbjct: 348 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQC 407
Query: 249 AIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
A++++ ++G G ++ L DGSF E N
Sbjct: 408 AVKLAKMVGYVSAGTVEYLYSQDGSFYFLELN 439
>gi|38679974 acetyl-Coenzyme A carboxylase alpha isoform 4 [Homo
sapiens]
Length = 2268
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 139 ENFAKMIDE----AEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHE---APYL 191
+ + K +D+ AE + +P+++K + G GK + + +L ++ E +P
Sbjct: 210 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 269
Query: 192 FQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSNCSLGGVGMMC-SLSEQGKQL 248
+ K+S +V+++ G + R CS R Q + ++ E +Q
Sbjct: 270 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQC 329
Query: 249 AIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
A++++ ++G G ++ L DGSF E N
Sbjct: 330 AVKLAKMVGYVSAGTVEYLYSQDGSFYFLELN 361
>gi|38679971 acetyl-Coenzyme A carboxylase alpha isoform 3 [Homo
sapiens]
Length = 2288
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 139 ENFAKMIDE----AEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHE---APYL 191
+ + K +D+ AE + +P+++K + G GK + + +L ++ E +P
Sbjct: 230 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 289
Query: 192 FQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSNCSLGGVGMMC-SLSEQGKQL 248
+ K+S +V+++ G + R CS R Q + ++ E +Q
Sbjct: 290 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQC 349
Query: 249 AIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
A++++ ++G G ++ L DGSF E N
Sbjct: 350 AVKLAKMVGYVSAGTVEYLYSQDGSFYFLELN 381
>gi|38679967 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo
sapiens]
Length = 2346
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 139 ENFAKMIDE----AEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHE---APYL 191
+ + K +D+ AE + +P+++K + G GK + + +L ++ E +P
Sbjct: 288 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 347
Query: 192 FQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSNCSLGGVGMMC-SLSEQGKQL 248
+ K+S +V+++ G + R CS R Q + ++ E +Q
Sbjct: 348 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQC 407
Query: 249 AIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
A++++ ++G G ++ L DGSF E N
Sbjct: 408 AVKLAKMVGYVSAGTVEYLYSQDGSFYFLELN 439
>gi|38679960 acetyl-Coenzyme A carboxylase alpha isoform 1 [Homo
sapiens]
Length = 2383
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 139 ENFAKMIDE----AEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHE---APYL 191
+ + K +D+ AE + +P+++K + G GK + + +L ++ E +P
Sbjct: 325 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 384
Query: 192 FQKYVKESHGRDVRVIV-VGGRVVGTMLR-CSTDGRMQSNCSLGGVGMMC-SLSEQGKQL 248
+ K+S +V+++ G + R CS R Q + ++ E +Q
Sbjct: 385 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQC 444
Query: 249 AIQVSNILGMDVCG-IDLLMKDDGSFCVCEAN 279
A++++ ++G G ++ L DGSF E N
Sbjct: 445 AVKLAKMVGYVSAGTVEYLYSQDGSFYFLELN 476
>gi|41281583 Histidine acid phosphatase domain containing 1 [Homo
sapiens]
Length = 1222
Score = 34.7 bits (78), Expect = 0.15
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 184 IRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCST--DGRMQSNCSLGGVGMMCSL 241
+R Y++++++ + G DV+V VG R S DG+++ + V L
Sbjct: 228 VRKTGSYIYEEFMP-TDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVIL 286
Query: 242 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEAN 279
+ + K +A +V VCG DLL + +G VC+ N
Sbjct: 287 NAREKLIAWKVCLAFKQTVCGFDLL-RANGQSYVCDVN 323
>gi|116805327 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
precursor [Homo sapiens]
Length = 725
Score = 34.7 bits (78), Expect = 0.15
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 106 PQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRG 165
P AI + K + +A GVP+ + + +G ++ + + A + +P+++K RG G
Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGY-HGEDQSDQCLKEHARRIGYPVMIKAVRGGGG 212
Query: 166 KAVFLARDKHHLADLSHLIRHEA-------PYLFQKYVKESHGRDVRVIVVG---GRVVG 215
K + + R + + R EA L +K+V R V V V G G V
Sbjct: 213 KGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP--RHVEVQVFGDHHGNAVY 270
Query: 216 TMLR-CSTDGRMQSNC-SLGGVGMMCSLSEQGKQLAIQVSNILGMDVCG-IDLLMKDDGS 272
R CS R Q G+ + ++ + A++ + + G ++ +M +
Sbjct: 271 LFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN 330
Query: 273 FCVCEANANV 282
FC E N +
Sbjct: 331 FCFMEMNTRL 340
>gi|188497750 hexokinase 1 isoform HKI-td [Homo sapiens]
Length = 905
Score = 33.5 bits (75), Expect = 0.33
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I++C++ F + + G +PL TFS+ + L+ +++ T+G
Sbjct: 566 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQT---------SLDAGILITWTKG------ 610
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
F A D + H+ L + +K D+ V+ V VGTM+ C+ + +
Sbjct: 611 FKATD---------CVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE---EP 658
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFI 285
C +G G G E+ K ++++ D G C+ N+ +
Sbjct: 659 TCEVGLIVGTGSNACYMEEMK---------------NVEMVEGDQGQMCI-----NMEWG 698
Query: 286 AF-DKACNLDV 295
AF D C D+
Sbjct: 699 AFGDNGCLDDI 709
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 191 LFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG---GVGMMCSLSEQGKQ 247
L K +K+ D ++ V VGTM+ C D +C +G G G E+ +
Sbjct: 176 LLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEELRH 232
Query: 248 LAIQVSNILGMDVCGIDLLMKDDGSFCV 275
IDL+ D+G C+
Sbjct: 233 ---------------IDLVEGDEGRMCI 245
>gi|188497754 hexokinase 1 isoform HKI [Homo sapiens]
Length = 917
Score = 33.5 bits (75), Expect = 0.33
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I++C++ F + + G +PL TFS+ + L+ +++ T+G
Sbjct: 578 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQT---------SLDAGILITWTKG------ 622
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
F A D + H+ L + +K D+ V+ V VGTM+ C+ + +
Sbjct: 623 FKATD---------CVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE---EP 670
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFI 285
C +G G G E+ K ++++ D G C+ N+ +
Sbjct: 671 TCEVGLIVGTGSNACYMEEMK---------------NVEMVEGDQGQMCI-----NMEWG 710
Query: 286 AF-DKACNLDV 295
AF D C D+
Sbjct: 711 AFGDNGCLDDI 721
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 191 LFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG---GVGMMCSLSEQGKQ 247
L K +K+ D ++ V VGTM+ C D +C +G G G E+ +
Sbjct: 188 LLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEELRH 244
Query: 248 LAIQVSNILGMDVCGIDLLMKDDGSFCV 275
IDL+ D+G C+
Sbjct: 245 ---------------IDLVEGDEGRMCI 257
>gi|15991829 hexokinase 1 isoform HKI-ta/tb [Homo sapiens]
Length = 921
Score = 33.5 bits (75), Expect = 0.33
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I++C++ F + + G +PL TFS+ + L+ +++ T+G
Sbjct: 582 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQT---------SLDAGILITWTKG------ 626
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
F A D + H+ L + +K D+ V+ V VGTM+ C+ + +
Sbjct: 627 FKATD---------CVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE---EP 674
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFI 285
C +G G G E+ K ++++ D G C+ N+ +
Sbjct: 675 TCEVGLIVGTGSNACYMEEMK---------------NVEMVEGDQGQMCI-----NMEWG 714
Query: 286 AF-DKACNLDV 295
AF D C D+
Sbjct: 715 AFGDNGCLDDI 725
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 191 LFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG---GVGMMCSLSEQGKQ 247
L K +K+ D ++ V VGTM+ C D +C +G G G E+ +
Sbjct: 192 LLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEELRH 248
Query: 248 LAIQVSNILGMDVCGIDLLMKDDGSFCV 275
IDL+ D+G C+
Sbjct: 249 ---------------IDLVEGDEGRMCI 261
>gi|15991831 hexokinase 1 isoform HKI-ta/tb [Homo sapiens]
Length = 921
Score = 33.5 bits (75), Expect = 0.33
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I++C++ F + + G +PL TFS+ + L+ +++ T+G
Sbjct: 582 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQT---------SLDAGILITWTKG------ 626
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
F A D + H+ L + +K D+ V+ V VGTM+ C+ + +
Sbjct: 627 FKATD---------CVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE---EP 674
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFI 285
C +G G G E+ K ++++ D G C+ N+ +
Sbjct: 675 TCEVGLIVGTGSNACYMEEMK---------------NVEMVEGDQGQMCI-----NMEWG 714
Query: 286 AF-DKACNLDV 295
AF D C D+
Sbjct: 715 AFGDNGCLDDI 725
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 191 LFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG---GVGMMCSLSEQGKQ 247
L K +K+ D ++ V VGTM+ C D +C +G G G E+ +
Sbjct: 192 LLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEELRH 248
Query: 248 LAIQVSNILGMDVCGIDLLMKDDGSFCV 275
IDL+ D+G C+
Sbjct: 249 ---------------IDLVEGDEGRMCI 261
>gi|15991827 hexokinase 1 isoform HKI-R [Homo sapiens]
Length = 916
Score = 33.5 bits (75), Expect = 0.33
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I++C++ F + + G +PL TFS+ + L+ +++ T+G
Sbjct: 577 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQT---------SLDAGILITWTKG------ 621
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
F A D + H+ L + +K D+ V+ V VGTM+ C+ + +
Sbjct: 622 FKATD---------CVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE---EP 669
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFI 285
C +G G G E+ K ++++ D G C+ N+ +
Sbjct: 670 TCEVGLIVGTGSNACYMEEMK---------------NVEMVEGDQGQMCI-----NMEWG 709
Query: 286 AF-DKACNLDV 295
AF D C D+
Sbjct: 710 AFGDNGCLDDI 720
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 191 LFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG---GVGMMCSLSEQGKQ 247
L K +K+ D ++ V VGTM+ C D +C +G G G E+ +
Sbjct: 187 LLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEELRH 243
Query: 248 LAIQVSNILGMDVCGIDLLMKDDGSFCV 275
IDL+ D+G C+
Sbjct: 244 ---------------IDLVEGDEGRMCI 256
>gi|15553127 hexokinase 2 [Homo sapiens]
Length = 917
Score = 33.1 bits (74), Expect = 0.43
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 45/170 (26%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I C+ F ++ +PL TFS+ H+ +DE+ +V T+G + V
Sbjct: 130 IAECLANFMDKLQIKDKKLPLGFTFSFPCHQT---KLDES------FLVSWTKGFKSSGV 180
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
D+ LIR K ++ D+ ++ V VGTM+ C D
Sbjct: 181 -------EGRDVVALIR--------KAIQRRGDFDIDIVAVVNDTVGTMMTCGYD---DH 222
Query: 229 NCSLG---GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCV 275
NC +G G G E+ + ID++ D+G C+
Sbjct: 223 NCEIGLIVGTGSNACYMEEMRH---------------IDMVEGDEGRMCI 257
Score = 29.6 bits (65), Expect = 4.8
Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 49/236 (20%)
Query: 109 ILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAV 168
I+ C+ F + + G +PL TFS+ +N +DE+ +++K T+G +
Sbjct: 578 IVQCIADFLEYMGMKGVSLPLGFTFSFPCQQN---SLDES------ILLKWTKGFKA--- 625
Query: 169 FLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQS 228
S + L ++ + D+ V+ V VGTM+ C G
Sbjct: 626 ------------SGCEGEDVVTLLKEAIHRREEFDLDVVAVVNDTVGTMMTC---GFEDP 670
Query: 229 NCSLG---GVGM-MCSL----------SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFC 274
+C +G G G C + E+G+ G + C D + D
Sbjct: 671 HCEVGLIVGTGSNACYMEEMRNVELVEGEEGRMCVNMEWGAFGDNGCLDDFRTEFD--VA 728
Query: 275 VCEANANVGFIAFDKACN-----LDVAGIIADYA-ASLLPSGRLTRRMSLLSVVST 324
V E + N G F+K + V I+ D+ LL GR++ R+ + T
Sbjct: 729 VDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFET 784
>gi|39777594 solute carrier organic anion transporter family member
4A1 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.74
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 273 FCV-CEANANVGFIAFDKAC-NLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSE 330
FC+ C + +G + F C ++ +AG+ A Y SLLP G L + S E
Sbjct: 457 FCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYS 516
Query: 331 PELG 334
P G
Sbjct: 517 PVCG 520
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 292 NLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSEPELG--PPASTAVDNMSASSS 349
N AG++ + LLP L S + V++ S+TS E G PPA A D SA SS
Sbjct: 34 NFHRAGLLEESVYDLLPK-ELQLPPSRETSVASMSQTSGGEAGSPPPAVVAADASSAPSS 92
Query: 350 S 350
S
Sbjct: 93 S 93
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 292 NLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSEPELG--PPASTAVDNMSASSS 349
N AG++ + LLP L S + V++ S+TS E G PPA A D SA SS
Sbjct: 34 NFHRAGLLEESVYDLLPK-ELQLPPSRETSVASMSQTSGGEAGSPPPAVVAADASSAPSS 92
Query: 350 S 350
S
Sbjct: 93 S 93
>gi|39979638 family with sequence similarity 5, member C [Homo
sapiens]
Length = 766
Score = 30.0 bits (66), Expect = 3.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 314 RRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPES 357
RR+ + + STA + +E GP + DN+ + SS + PE+
Sbjct: 193 RRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPEN 236
>gi|19923477 NEDD8 ultimate buster-1 [Homo sapiens]
Length = 601
Score = 29.3 bits (64), Expect = 6.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 330 EPELGPPASTAVDNMSASSSSVDSDPES-TERELLTKLP 367
E L PPA++ D+ SS+S D D E+ E+L +P
Sbjct: 528 EDSLSPPATSPSDSAGTSSASTDEDMETEAVNEILEDIP 566
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 19/75 (25%)
Query: 113 VNKFWTFQELAGHGVPLPD------------TFSYGGHENFAKMIDEAEVLEFPMVVKNT 160
V F F E+ +P+ D TFS+GGH NF + E + F +
Sbjct: 175 VKVFEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSAL 234
Query: 161 RGHR-------GKAV 168
RG + GKAV
Sbjct: 235 RGMKLMYKGEDGKAV 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,973,607
Number of Sequences: 37866
Number of extensions: 595564
Number of successful extensions: 2108
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 41
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.