Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RIMKLB Sequence: fasta or formatted (386aa) NCBI GI: 134254462
Description:

ribosomal modification protein rimK-like family member B

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         28           2
 C cysteine            3.1         12           2
 D aspartate           6.0         23           2
 E glutamate           6.5         25           3
 F phenylalanine       3.4         13           1
 G glycine             7.3         28           2
 H histidine           2.3          9           2
 I isoleucine          4.4         17           2
 K lysine              4.4         17           1
 L leucine            11.1         43           2
 M methionine          3.9         15           2
 N asparagine          4.1         16           1
 P proline             3.9         15           2
 Q glutamine           3.1         12           1
 R arginine            6.0         23           2
 S serine              7.5         29           4
 T threonine           4.1         16           1
 V valine              9.3         36           4
 W tryptophan          0.8          3           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal modification protein rimK-like family mem... 
RIMKLA                0.677   ribosomal modification protein rimK-like family mem...
SYN1                  0.023   synapsin I isoform Ia 
SYN1                  0.023   synapsin I isoform Ib 
SYN2                  0.019   synapsin II isoform IIa 
SYN2                  0.019   synapsin II isoform IIb 
ACACB                 0.017   acetyl-Coenzyme A carboxylase beta 
HISPPD2A              0.013   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.013   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.013   histidine acid phosphatase domain containing 2A isof...
HISPPD2A              0.013   histidine acid phosphatase domain containing 2A isof...
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 4 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 3 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 1 
HISPPD1               0.013   Histidine acid phosphatase domain containing 1 [Homo...
MCCC1                 0.013   methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) pr...
HK1                   0.011   hexokinase 1 isoform HKI-td 
HK1                   0.011   hexokinase 1 isoform HKI 
HK1                   0.011   hexokinase 1 isoform HKI-ta/tb 
HK1                   0.011   hexokinase 1 isoform HKI-ta/tb 
HK1                   0.011   hexokinase 1 isoform HKI-R 
HK2                   0.011   hexokinase 2 
SLCO4A1               0.009   solute carrier organic anion transporter family memb...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform b [Ho...
FAM5C                 0.007   family with sequence similarity 5, member C 
NUB1                  0.005   NEDD8 ultimate buster-1 
SFRS17A               0.005   DNA segment on chromosome X and Y (unique) 155 expre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press