Guide to the Human Genome
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Name: SLCO4A1 Sequence: fasta or formatted (722aa) NCBI GI: 39777594
Description:

solute carrier organic anion transporter family member 4A1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         66           3
 C cysteine            4.0         29           1
 D aspartate           2.8         20           1
 E glutamate           2.8         20           1
 F phenylalanine       5.5         40           2
 G glycine            10.0         72           4
 H histidine           2.1         15           1
 I isoleucine          4.2         30           1
 K lysine              2.5         18           1
 L leucine            12.6         91           3
 M methionine          1.8         13           1
 N asparagine          2.2         16           1
 P proline             6.4         46           2
 Q glutamine           3.7         27           2
 R arginine            3.7         27           2
 S serine              9.4         68           2
 T threonine           6.1         44           2
 V valine              6.1         44           2
 W tryptophan          1.7         12           2
 Y tyrosine            3.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family memb... 
SLCO4C1               0.333   solute carrier organic anion transporter family, mem...
SLCO5A1               0.272   solute carrier organic anion transporter family, me...
SLCO6A1               0.227   solute carrier organic anion transporter family, mem...
SLCO3A1               0.224   solute carrier organic anion transporter family, me...
SLCO3A1               0.224   solute carrier organic anion transporter family, me...
SLCO5A1               0.224   solute carrier organic anion transporter family, me...
SLCO5A1               0.214   solute carrier organic anion transporter family, me...
SLCO1C1               0.197   solute carrier organic anion transporter family, memb...
SLCO1B3               0.197   solute carrier organic anion transporter family, memb...
SLCO2A1               0.196   solute carrier organic anion transporter family, me...
SLCO1C1               0.194   solute carrier organic anion transporter family, me...
SLCO2B1               0.182   solute carrier organic anion transporter family, me...
SLCO2B1               0.182   solute carrier organic anion transporter family, memb...
SLCO1B1               0.180   solute carrier organic anion transporter family, me...
SLCO1C1               0.176   solute carrier organic anion transporter family, me...
SLCO1A2               0.176   organic anion transporting polypeptide A 
SLCO1A2               0.176   organic anion transporting polypeptide A 
LST-3TM12             0.164   liver-specific organic anion transporter 3TM12 [Hom...
SLCO1C1               0.155   solute carrier organic anion transporter family, me...
SLCO2B1               0.143   solute carrier organic anion transporter family, me...
AGRN                  0.010   agrin 
LOC100293676          0.005   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.005   PREDICTED: hypothetical protein XP_002348012 
LOC729815             0.005   PREDICTED: hypothetical protein 
FCGBP                 0.005   Fc fragment of IgG binding protein 
SLC43A3               0.005   solute carrier family 43, member 3 
SLC43A3               0.005   solute carrier family 43, member 3 
SLC43A3               0.005   solute carrier family 43, member 3 
MRGPRF                0.005   MAS-related GPR, member F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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