Guide to the Human Genome
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Name: MYO1A Sequence: fasta or formatted (1043aa) NCBI GI: 4885503
Description:

myosin IA

Referenced in:

Myosin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         62           2
 C cysteine            1.5         16           1
 D aspartate           3.6         38           2
 E glutamate           6.9         72           3
 F phenylalanine       4.0         42           1
 G glycine             7.1         74           2
 H histidine           1.6         17           1
 I isoleucine          5.1         53           2
 K lysine              8.2         86           3
 L leucine            11.2        117           3
 M methionine          2.1         22           1
 N asparagine          4.6         48           3
 P proline             3.0         31           2
 Q glutamine           5.6         58           2
 R arginine            5.8         61           2
 S serine              7.1         74           2
 T threonine           3.9         41           2
 V valine              7.3         76           2
 W tryptophan          1.0         10           1
 Y tyrosine            4.3         45           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IA 
MYO1B                 0.598   myosin IB isoform 2 
MYO1B                 0.558   myosin IB isoform 1 
MYO1B                 0.558   myosin IB isoform 1 
MYO1C                 0.374   myosin IC isoform b 
MYO1C                 0.374   myosin IC isoform a 
MYO1C                 0.374   myosin IC isoform c 
MYO1H                 0.338   myosin 1H 
MYO1D                 0.325   myosin ID 
MYO1G                 0.313   myosin IG 
MYO1E                 0.272   myosin IE 
MYO1F                 0.267   myosin IF 
MYO15A                0.227   myosin XV 
MYO5C                 0.225   myosin VC 
MYO5A                 0.225   myosin VA isoform 2 
MYO5A                 0.225   myosin VA isoform 1 
MYO7A                 0.224   myosin VIIA isoform 2 
MYO7A                 0.224   myosin VIIA isoform 3 
MYO7A                 0.224   myosin VIIA isoform 1 
MYO5B                 0.218   myosin VB 
MYO10                 0.217   myosin X 
MYO7B                 0.215   myosin VIIB 
MYH7                  0.207   myosin, heavy chain 7, cardiac muscle, beta 
MYH11                 0.204   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.204   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH11                 0.203   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.203   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH10                 0.202   myosin, heavy polypeptide 10, non-muscle 
MYH6                  0.202   myosin heavy chain 6 
MYH14                 0.200   myosin, heavy chain 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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