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Search of human proteins with 55770884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770884 ubiquitin associated domain containing 1 [Homo
sapiens]
(405 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens] 797 0.0
gi|21361517 UBX domain protein 1 [Homo sapiens] 68 2e-11
gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens] 65 1e-10
gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo sapi... 58 2e-08
gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo sapi... 55 1e-07
gi|24497612 ubiquitin associated and SH3 domain containing, B [H... 44 2e-04
gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3 ... 42 0.001
gi|49640014 ubiquitin associated and SH3 domain containing, A sh... 42 0.001
gi|9507221 ubiquitin associated and SH3 domain containing, A lon... 42 0.001
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 40 0.005
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 39 0.006
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 39 0.006
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens] 39 0.008
gi|239753617 PREDICTED: similar to heat shock 70kD protein bindi... 38 0.014
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens] 36 0.054
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens] 36 0.054
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens] 36 0.054
gi|146260271 hypothetical protein LOC129881 [Homo sapiens] 36 0.054
gi|29366838 UBA domain containing 2 isoform 2 [Homo sapiens] 35 0.12
gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens] 35 0.12
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 35 0.12
gi|221316645 UBA domain containing 2 isoform 1 [Homo sapiens] 35 0.12
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 35 0.16
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.46
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 33 0.60
gi|50345997 E1A binding protein p300 [Homo sapiens] 33 0.60
gi|24497554 homeobox A13 [Homo sapiens] 33 0.60
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.60
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.60
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.60
>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
Length = 405
Score = 797 bits (2059), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH 60
MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH
Sbjct: 1 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH 60
Query: 61 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD 120
HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD
Sbjct: 61 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD 120
Query: 121 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA 180
KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA
Sbjct: 121 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA 180
Query: 181 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP 240
NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP
Sbjct: 181 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP 240
Query: 241 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM 300
LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM
Sbjct: 241 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM 300
Query: 301 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL 360
GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL
Sbjct: 301 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL 360
Query: 361 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT 405
TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT
Sbjct: 361 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT 405
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 67.8 bits (164), Expect = 2e-11
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 196 ALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPLP-------GQAPP 247
AL L EMGFP RA KAL L + + AM+WL+EH +DP +D PL G+ P
Sbjct: 6 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHILGREPT 65
Query: 248 EAE--GATAAASEAAAGASATDEEARDELT----EIFKKIRRKREFRADARAV 294
+E G + S A G A EE R E T E+ + +R+RE R + A+
Sbjct: 66 SSEQGGLEGSGSAAGEGKPALSEEERQEQTKRMLELVAQKQREREEREEREAL 118
>gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens]
Length = 863
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 181 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDT 239
N ++D + +DE+++ QL EMGFP KA+ +M A W+I H E+P
Sbjct: 645 NQLIDPSD---IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAE 701
Query: 240 PL--PGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISL 297
PL PG G A+A + GAS D + +E+ I +
Sbjct: 702 PLTMPGY------GGAASAGASVFGASGLDNQPPEEIVAI-------------------I 736
Query: 298 MEMGFDEKEVIDALRVNNNQQNAACEWL 325
MGF + I ALR NN A +W+
Sbjct: 737 TSMGFQRNQAIQALRATNNNLERALDWI 764
Score = 35.4 bits (80), Expect = 0.093
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 189 DERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAE 233
D + E + +T MGF N+A +AL+ + ++ +A++W+ H E
Sbjct: 725 DNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 769
>gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo
sapiens]
Length = 835
Score = 57.8 bits (138), Expect = 2e-08
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 35/144 (24%)
Query: 185 DEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQA-MEWLIEHAEDPTIDTPL-- 241
DE + +DE+ + QL EMGFP + KA+ S +A M W++ H +DP PL
Sbjct: 625 DEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLIL 684
Query: 242 PGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMG 301
PG + P G+T+AA+ D D V +++ MG
Sbjct: 685 PGSSGP---GSTSAAA---------DPPPED--------------------CVTTIVSMG 712
Query: 302 FDEKEVIDALRVNNNQQNAACEWL 325
F + + ALR NN A +W+
Sbjct: 713 FSRDQALKALRATNNSLERAVDWI 736
Score = 34.7 bits (78), Expect = 0.16
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 194 EAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGAT 253
E + + MGF ++A KAL+ + S+ +A++W+ H +D + A +EG +
Sbjct: 702 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEA-----AMDISEGRS 756
Query: 254 AAAS 257
AA S
Sbjct: 757 AADS 760
>gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo
sapiens]
Length = 858
Score = 55.1 bits (131), Expect = 1e-07
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 35/137 (25%)
Query: 192 VDEAALRQLTEMGFPENRATKALQLNHMSVPQA-MEWLIEHAEDPTIDTPL--PGQAPPE 248
+DE+ + QL EMGFP + KA+ S +A M W++ H +DP PL PG + P
Sbjct: 655 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGP- 713
Query: 249 AEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVI 308
G+T+AA+ D D V +++ MGF + +
Sbjct: 714 --GSTSAAA---------DPPPED--------------------CVTTIVSMGFSRDQAL 742
Query: 309 DALRVNNNQQNAACEWL 325
ALR NN A +W+
Sbjct: 743 KALRATNNSLERAVDWI 759
Score = 34.7 bits (78), Expect = 0.16
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 194 EAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGAT 253
E + + MGF ++A KAL+ + S+ +A++W+ H +D + A +EG +
Sbjct: 725 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEA-----AMDISEGRS 779
Query: 254 AAAS 257
AA S
Sbjct: 780 AADS 783
>gi|24497612 ubiquitin associated and SH3 domain containing, B [Homo
sapiens]
Length = 649
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 195 AALRQLTEMGFPENRATKAL-QLNHMSVPQAMEWLIEHAEDPTIDTPLP 242
+AL L MGFP RA KAL SV A +WL H DP +D PLP
Sbjct: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPLP 87
>gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3
domain containing, A [Homo sapiens]
Length = 122
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 191 RVDEAALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPLP 242
R + L L MGFP + A KAL + +A+ WL +H DP++D P+P
Sbjct: 19 RSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPIP 71
>gi|49640014 ubiquitin associated and SH3 domain containing, A short
form [Homo sapiens]
Length = 623
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 191 RVDEAALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPLP 242
R + L L MGFP + A KAL + +A+ WL +H DP++D P+P
Sbjct: 19 RSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPIP 71
>gi|9507221 ubiquitin associated and SH3 domain containing, A long
form [Homo sapiens]
Length = 661
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 191 RVDEAALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPLP 242
R + L L MGFP + A KAL + +A+ WL +H DP++D P+P
Sbjct: 19 RSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPIP 71
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 39.7 bits (91), Expect = 0.005
Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 30/256 (11%)
Query: 151 ELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDED---EDERVDE----AALRQLTEM 203
E K+L IE A+K P A + A +L +D D R+DE + T+
Sbjct: 23 ETVKVLKEKIE-AEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 81
Query: 204 G----FPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLPGQ-APPEAEGATAAASE 258
G P + A + S P A + H + P + + P + + S
Sbjct: 82 GQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSV 141
Query: 259 AAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQ 318
++G+S +E+A L E+ + +M MG++ + V+ ALR + N
Sbjct: 142 PSSGSSGREEDAASTLVT-------GSEYET---MLTEIMSMGYERERVVAALRASYNNP 191
Query: 319 NAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLN 378
+ A E+LL SPE + + + P + NP L + +N
Sbjct: 192 HRAVEYLLTGIPGSPEPEHGSVQESQ-----VSEQPATEAAGENPLEFLRDQPQFQNMRQ 246
Query: 379 STQWMNDPETGPVMLQ 394
Q +P P +LQ
Sbjct: 247 VIQ--QNPALLPALLQ 260
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 197 LRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 234
++QLT+MGFP A +AL+ N+M++ QAM L+E D
Sbjct: 941 IKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 978
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 197 LRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 234
++QLT+MGFP A +AL+ N+M++ QAM L+E D
Sbjct: 944 IKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 981
>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
Length = 369
Score = 38.9 bits (89), Expect = 0.008
Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 49/333 (14%)
Query: 93 KKRAPSPLPKMADVSAEEKKKQDQKAP-DKEAILRATANLPSYNMDRAAVQTNMRDFQTE 151
K+ P D+ A+E ++ DKE ++ + P D A T Q
Sbjct: 56 KEEKPDSKKVEEDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQAN 115
Query: 152 LRKI----------LVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVDEAALRQLT 201
+K+ L I++ + LNP L+ K ++ + + AA+R
Sbjct: 116 DKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPN---AAIRD-- 170
Query: 202 EMGFPENRATKALQLNHMSVPQAMEW------LIEHAEDPTIDTPLPGQAPPEAEGATAA 255
+A+++N S Q +W L+ H E+ D L + + E A+A
Sbjct: 171 --------CDRAIEINPDSA-QPYKWRGKAHRLLGHWEEAAHDLALACKLDYD-EDASAM 220
Query: 256 ASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNN 315
E A E R +++ R +RE + V E + +A R +
Sbjct: 221 LKEVQPRAQKIAEHRRK-----YERKREEREIKERIERVKKAREEHERAQREEEARRQSG 275
Query: 316 NQQNAACEWLLGDRKPSPEELDKGID---------PDSPLFQAILDNPVVQLGLTNPKTL 366
Q + G P G+ P IL +P V + +P+ +
Sbjct: 276 AQYGSFPGGFPGGM---PGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQDPEVM 332
Query: 367 LAFEDMLENPLNSTQWMNDPETGPVMLQISRIF 399
+AF+D+ +NP N +++ ++P+ ++ ++S F
Sbjct: 333 VAFQDVAQNPANMSKYQSNPKVMNLISKLSAKF 365
>gi|239753617 PREDICTED: similar to heat shock 70kD protein binding
protein [Homo sapiens]
Length = 183
Score = 38.1 bits (87), Expect = 0.014
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 331 PSPEELDKGIDPDSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGP 390
PSP +L PL++ IL +P V + +P+ ++AF+D+ +NP N +++ ++P+
Sbjct: 119 PSPGKL-------YPLYE-ILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMN 170
Query: 391 VMLQISRIF 399
++ ++S F
Sbjct: 171 LLSKLSAKF 179
>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 36.2 bits (82), Expect = 0.054
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 190 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI-EHAEDPTIDTPLPGQ 244
E VDE AL+ +TEMGF + + +AL N ++ A+ L+ + + P + PL G+
Sbjct: 192 ELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGR 247
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/83 (27%), Positives = 35/83 (42%)
Query: 251 GATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDA 310
GA + + AAG + +++ T+ K D +A+ + EMGF ++ A
Sbjct: 156 GARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQA 215
Query: 311 LRVNNNQQNAACEWLLGDRKPSP 333
L N N AA LL K P
Sbjct: 216 LMDNGNNLEAALNVLLTSNKQKP 238
>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.054
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 190 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI-EHAEDPTIDTPLPGQ 244
E VDE AL+ +TEMGF + + +AL N ++ A+ L+ + + P + PL G+
Sbjct: 285 ELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGR 340
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/83 (27%), Positives = 35/83 (42%)
Query: 251 GATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDA 310
GA + + AAG + +++ T+ K D +A+ + EMGF ++ A
Sbjct: 249 GARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQA 308
Query: 311 LRVNNNQQNAACEWLLGDRKPSP 333
L N N AA LL K P
Sbjct: 309 LMDNGNNLEAALNVLLTSNKQKP 331
>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 36.2 bits (82), Expect = 0.054
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 190 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI-EHAEDPTIDTPLPGQ 244
E VDE AL+ +TEMGF + + +AL N ++ A+ L+ + + P + PL G+
Sbjct: 192 ELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGR 247
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/83 (27%), Positives = 35/83 (42%)
Query: 251 GATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDA 310
GA + + AAG + +++ T+ K D +A+ + EMGF ++ A
Sbjct: 156 GARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQA 215
Query: 311 LRVNNNQQNAACEWLLGDRKPSP 333
L N N AA LL K P
Sbjct: 216 LMDNGNNLEAALNVLLTSNKQKP 238
>gi|146260271 hypothetical protein LOC129881 [Homo sapiens]
Length = 552
Score = 36.2 bits (82), Expect = 0.054
Identities = 37/173 (21%), Positives = 82/173 (47%), Gaps = 26/173 (15%)
Query: 56 KSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQD 115
K H+L+ ER+ + +L+E + ++D+++ +A+ AE +K++
Sbjct: 314 KEAETHRLMEKRRERIHNFLSELLKEKLDNEDMII---------ARDIAEAEAEWEKRER 364
Query: 116 QKAPDKEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVE 175
+K +A L+ A RA V N + + + + IE ++LLA+ A +
Sbjct: 365 EKDEKNKAELKTIAEY------RAIVMKNKEEEERQRK------IEAKEQLLAV-MKADQ 411
Query: 176 LF---KKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAM 225
+F +K + E + V +A ++Q+ + F +A +A +L++ + +A+
Sbjct: 412 IFWEHEKEKKCKADKEHQEVQDAHIQQMAKNKFNAKQAKQA-ELDYCRLTEAL 463
>gi|29366838 UBA domain containing 2 isoform 2 [Homo sapiens]
Length = 309
Score = 35.0 bits (79), Expect = 0.12
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 294 VISLMEMGFDEKEVIDALRVNNNQQNAACEWLL 326
V LMEMGF + ++ALR +NN N A +LL
Sbjct: 275 VARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
>gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens]
Length = 1326
Score = 35.0 bits (79), Expect = 0.12
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 23/116 (19%)
Query: 78 ILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPDKEAILRATANLPSYNMD 137
++ E + D ++KKRAP P PK KKQ + A +KE +L + +P + +
Sbjct: 156 LVTEGQEKMDFKKMLKKRAP-PAPK---------KKQKKVANEKE-MLEILSKVPKKDFE 204
Query: 138 RAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVD 193
+ ++ DF+ LRK L E+ +K + +A+ + K ED++ +VD
Sbjct: 205 KVCMEYGFTDFRGLLRK----LKEMKKK---VEVEAIRILKPL-----EDKETKVD 248
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 232 AEDPTIDTPLPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADA 291
+ +P + + P E T A+ A S + + +R L E + +
Sbjct: 134 SSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQ--SYE 191
Query: 292 RAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLL----GDRK 330
V +M MG++ ++VI ALR + N + A E+LL GDR+
Sbjct: 192 NMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 234
>gi|221316645 UBA domain containing 2 isoform 1 [Homo sapiens]
Length = 344
Score = 35.0 bits (79), Expect = 0.12
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 294 VISLMEMGFDEKEVIDALRVNNNQQNAACEWLL 326
V LMEMGF + ++ALR +NN N A +LL
Sbjct: 310 VARLMEMGFSRGDALEALRASNNDLNVATNFLL 342
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 34.7 bits (78), Expect = 0.16
Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 34/270 (12%)
Query: 100 LPKMADVSAEEKKKQDQKAPDKEAILRATANLPSYNM-------DRAAVQTNMRDFQTEL 152
L + + E K++DQ+ ++ A +A L + ++A + + + ++
Sbjct: 641 LSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKI 700
Query: 153 RKILVSLIEVA-QKLLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRAT 211
+++ V +E QKL+A + V K + DER + LRQ E+ R
Sbjct: 701 KEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREK 760
Query: 212 KALQLNHMSVPQAMEWLIEHAEDPTIDTPLPGQ-APPEAEGATAAASEAAAGASATDEEA 270
+A L +A + +H E Q E + AA A EE
Sbjct: 761 EA--LGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEEL 818
Query: 271 RDELTEIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACE------- 323
R +L E A RA+ + E G +E+E + +N +Q E
Sbjct: 819 RQQLEE---------SSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAG 869
Query: 324 -------WLLGDRKPSPEELDKGIDPDSPL 346
WLL + EE+ KG D + L
Sbjct: 870 RTRKEEAWLLNREQELREEIRKGRDKEIEL 899
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.1 bits (74), Expect = 0.46
Identities = 61/283 (21%), Positives = 115/283 (40%), Gaps = 40/283 (14%)
Query: 3 VQEEKIFAGKVLRLHICASD----GAEWLEEATEDTS--VEKLKERCLKHCAHGSLEDPK 56
+Q EKI L+ + GA LEE TE+TS +EKL+E G +E
Sbjct: 771 LQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELA--IKSGQVE--- 825
Query: 57 SITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQ 116
H + AA ++ + + I E+ +Q + ++ ++ A S ++++ A K+ +
Sbjct: 826 ---HLQQETAALKKQM---QKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSE 879
Query: 117 KAPDKEAILR-------ATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLAL 169
++ +++ A A L + + A V+ +M D + L+ E+ L +L
Sbjct: 880 LKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL 939
Query: 170 NPDAVEL--FKKANAMLDEDEDERVDEA------ALRQLTEMGFPENRATKALQLNHMSV 221
D ++ +AN L + +E EA +++ +G A K ++ H +
Sbjct: 940 QFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAY 999
Query: 222 PQAMEWLIEHAEDPTIDTPLPGQAPPEAEGATAAASEAAAGAS 264
A+ L ++ A EA A A G+S
Sbjct: 1000 ENAVGILSRRLQE--------ALAAKEAADAELGQLRAQGGSS 1034
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 32.7 bits (73), Expect = 0.60
Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 54 DPKSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPK------MADVS 107
D + + K I S+ + + + LE +Q + + K RA + D+
Sbjct: 4011 DTEKTAYEKCI---SDNISNSVKKALESILQKEQRQKMEKIRALKKMKSSISQGIQLDIK 4067
Query: 108 AEEKKKQDQKAPDKEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLI------E 161
+EK+ + K + A A++PS + + + ++ TE+ + + + E
Sbjct: 4068 EQEKRIEHIKGEPSVLLTNACASIPSPSHLQLDTRREKAEYVTEITRYYLPELSHQKSSE 4127
Query: 162 VAQKL--LALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHM 219
+K +A D +KA + + ED+ V +A + + PE++ KA +
Sbjct: 4128 AGEKADGVASKGDITIKVQKAKDYMQQKEDDEVKISAKKDIMH---PEDKGLKAKKALSQ 4184
Query: 220 SVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGATAAASE-AAAGASATDEEARDE 273
+P + E +D Q + EG + AG D E +++
Sbjct: 4185 DLP------LNTKEPGKMDQEAQEQGKEDREGEEQGKEDRRGAGQEKVDREDKEQ 4233
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 32.7 bits (73), Expect = 0.60
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 342 PDSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVM 392
P L +++ +P+ Q GLT+P + + P ST MN P P M
Sbjct: 113 PGLGLINSMVKSPMTQAGLTSPNMGMGTSGPNQGPTQSTGMMNSPVNQPAM 163
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 32.7 bits (73), Expect = 0.60
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 242 PGQAPPEAEGATAAASEAAAGASA 265
PG+APP A A AAA+ AAA A+A
Sbjct: 109 PGEAPPSAAAAAAAAAAAAAAAAA 132
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.7 bits (73), Expect = 0.60
Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 54 DPKSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPK------MADVS 107
D + + K I S+ + + + LE +Q + + K RA + D+
Sbjct: 3940 DTEKTAYEKCI---SDNISNSVKKALESILQKEQRQKMEKIRALKKMKSSISQGIQLDIK 3996
Query: 108 AEEKKKQDQKAPDKEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLI------E 161
+EK+ + K + A A++PS + + + ++ TE+ + + + E
Sbjct: 3997 EQEKRIEHIKGEPSVLLTNACASIPSPSHLQLDTRREKAEYVTEITRYYLPELSHQKSSE 4056
Query: 162 VAQKL--LALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHM 219
+K +A D +KA + + ED+ V +A + + PE++ KA +
Sbjct: 4057 AGEKADGVASKGDITIKVQKAKDYMQQKEDDEVKISAKKDIMH---PEDKGLKAKKALSQ 4113
Query: 220 SVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGATAAASE-AAAGASATDEEARDE 273
+P + E +D Q + EG + AG D E +++
Sbjct: 4114 DLP------LNTKEPGKMDQEAQEQGKEDREGEEQGKEDRRGAGQEKVDREDKEQ 4162
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.7 bits (73), Expect = 0.60
Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 54 DPKSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPK------MADVS 107
D + + K I S+ + + + LE +Q + + K RA + D+
Sbjct: 3940 DTEKTAYEKCI---SDNISNSVKKALESILQKEQRQKMEKIRALKKMKSSISQGIQLDIK 3996
Query: 108 AEEKKKQDQKAPDKEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLI------E 161
+EK+ + K + A A++PS + + + ++ TE+ + + + E
Sbjct: 3997 EQEKRIEHIKGEPSVLLTNACASIPSPSHLQLDTRREKAEYVTEITRYYLPELSHQKSSE 4056
Query: 162 VAQKL--LALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHM 219
+K +A D +KA + + ED+ V +A + + PE++ KA +
Sbjct: 4057 AGEKADGVASKGDITIKVQKAKDYMQQKEDDEVKISAKKDIMH---PEDKGLKAKKALSQ 4113
Query: 220 SVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGATAAASE-AAAGASATDEEARDE 273
+P + E +D Q + EG + AG D E +++
Sbjct: 4114 DLP------LNTKEPGKMDQEAQEQGKEDREGEEQGKEDRRGAGQEKVDREDKEQ 4162
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.7 bits (73), Expect = 0.60
Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 54 DPKSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPK------MADVS 107
D + + K I S+ + + + LE +Q + + K RA + D+
Sbjct: 3940 DTEKTAYEKCI---SDNISNSVKKALESILQKEQRQKMEKIRALKKMKSSISQGIQLDIK 3996
Query: 108 AEEKKKQDQKAPDKEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLI------E 161
+EK+ + K + A A++PS + + + ++ TE+ + + + E
Sbjct: 3997 EQEKRIEHIKGEPSVLLTNACASIPSPSHLQLDTRREKAEYVTEITRYYLPELSHQKSSE 4056
Query: 162 VAQKL--LALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHM 219
+K +A D +KA + + ED+ V +A + + PE++ KA +
Sbjct: 4057 AGEKADGVASKGDITIKVQKAKDYMQQKEDDEVKISAKKDIMH---PEDKGLKAKKALSQ 4113
Query: 220 SVPQAMEWLIEHAEDPTIDTPLPGQAPPEAEGATAAASE-AAAGASATDEEARDE 273
+P + E +D Q + EG + AG D E +++
Sbjct: 4114 DLP------LNTKEPGKMDQEAQEQGKEDREGEEQGKEDRRGAGQEKVDREDKEQ 4162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,145,726
Number of Sequences: 37866
Number of extensions: 687193
Number of successful extensions: 3116
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3038
Number of HSP's gapped (non-prelim): 100
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.