Guide to the Human Genome
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Name: UBAC2 Sequence: fasta or formatted (309aa) NCBI GI: 29366838
Description:

UBA domain containing 2 isoform 2

Referenced in:

Amino Acid Biosynthesis and Selected Derivatives

Other entries for this name:
alt prot [344aa] UBA domain containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           2
 C cysteine            3.6         11           2
 D aspartate           1.9          6           1
 E glutamate           4.2         13           2
 F phenylalanine       6.5         20           3
 G glycine             6.8         21           2
 H histidine           1.0          3           1
 I isoleucine          4.2         13           1
 K lysine              1.6          5           1
 L leucine            11.7         36           2
 M methionine          4.2         13           1
 N asparagine          2.9          9           2
 P proline             5.2         16           2
 Q glutamine           8.4         26           3
 R arginine            7.8         24           2
 S serine             11.3         35           3
 T threonine           4.5         14           2
 V valine              4.5         14           1
 W tryptophan          2.3          7           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UBA domain containing 2 isoform 2 
UBAC2                 0.671   UBA domain containing 2 isoform 1 
USP5                  0.028   ubiquitin specific peptidase 5 isoform 2 
USP5                  0.028   ubiquitin specific peptidase 5 isoform 1 
HUWE1                 0.025   HECT, UBA and WWE domain containing 1 
USP13                 0.023   ubiquitin thiolesterase 13 
UBAC1                 0.017   ubiquitin associated domain containing 1 
VPS13D                0.012   vacuolar protein sorting 13D isoform 2 
VPS13D                0.012   vacuolar protein sorting 13D isoform 1 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
RAD23B                0.012   UV excision repair protein RAD23 homolog B 
TDRD3                 0.010   tudor domain containing 3 isoform 2 
TDRD3                 0.010   tudor domain containing 3 isoform 1 
TDRD3                 0.010   tudor domain containing 3 isoform 2 
RAD23A                0.008   UV excision repair protein RAD23 homolog A 
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
FBN3                  0.008   fibrillin 3 precursor 
GLP1R                 0.008   glucagon-like peptide 1 receptor 
C2orf78               0.008   hypothetical protein LOC388960 
KRTAP9-4              0.008   keratin associated protein 9-4 
ZNF853                0.007   zinc finger protein 853 
TRIM21                0.007   tripartite motif protein 21 
TNRC6C                0.007   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.007   trinucleotide repeat containing 6C isoform 2 
AIRE                  0.007   autoimmune regulator isoform 2 
LRFN2                 0.005   leucine rich repeat and fibronectin type III domain ...
MED12                 0.005   mediator complex subunit 12 
KRTAP9-2              0.005   keratin associated protein 9.2 
TRIML1                0.005   tripartite motif family-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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