Guide to the Human Genome
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Search of human proteins with 55749451

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55749451 transcription elongation factor A (SII)-like 4
[Homo sapiens]
         (215 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55749459 transcription elongation factor A (SII)-like 4 [Homo...   444   e-125
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo...   444   e-125
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo...   444   e-125
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo...   444   e-125
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo...   355   2e-98
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo...   184   4e-47
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo...   182   2e-46
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo...   182   2e-46
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom...   157   5e-39
gi|55743140 WW domain binding protein 5 [Homo sapiens]                 63   2e-10
gi|55743147 WW domain binding protein 5 [Homo sapiens]                 63   2e-10
gi|10047100 WW domain binding protein 5 [Homo sapiens]                 63   2e-10
gi|55743145 WW domain binding protein 5 [Homo sapiens]                 63   2e-10
gi|55741709 RNA binding motif protein 25 [Homo sapiens]                60   1e-09
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    59   4e-09
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    53   2e-07
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    52   3e-07
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    52   3e-07
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            51   8e-07
gi|21361639 DIPB protein [Homo sapiens]                                50   1e-06
gi|11225260 DNA topoisomerase I [Homo sapiens]                         50   2e-06
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform...    50   2e-06
gi|13540523 nucleosomal binding protein 1 [Homo sapiens]               49   3e-06
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              49   3e-06
gi|157738619 smoothelin-like 1 [Homo sapiens]                          49   4e-06
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     48   7e-06
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]                47   9e-06
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]                 47   9e-06
gi|4557509 cylicin 2 [Homo sapiens]                                    47   9e-06
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     47   1e-05

>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score =  444 bits (1141), Expect = e-125
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK
Sbjct: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
           DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED
Sbjct: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
           DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180

Query: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215
           WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215


>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score =  444 bits (1141), Expect = e-125
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK
Sbjct: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
           DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED
Sbjct: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
           DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180

Query: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215
           WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215


>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score =  444 bits (1141), Expect = e-125
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK
Sbjct: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
           DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED
Sbjct: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
           DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180

Query: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215
           WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215


>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score =  444 bits (1141), Expect = e-125
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK
Sbjct: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
           DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED
Sbjct: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
           DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180

Query: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215
           WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215


>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
           sapiens]
          Length = 227

 Score =  355 bits (911), Expect = 2e-98
 Identities = 179/228 (78%), Positives = 195/228 (85%), Gaps = 14/228 (6%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKL++ENEGM SNQGK++NEEQP  E KPEV C LEDKKLENEG TEN GK   EE LK
Sbjct: 1   MEKLFNENEGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENTGKRV-EEPLK 59

Query: 61  DKGKPESEGEAK-EGKSEREGESEMEGGSEREGKPEIEGK------------PESEGEPG 107
           DK KPES G+AK EGKSER+G+SEM+GGS+ EGKPE  G+            PESEGEP 
Sbjct: 60  DKEKPESAGKAKGEGKSERKGKSEMQGGSKTEGKPERGGRAEGEGEPDSEREPESEGEPE 119

Query: 108 SETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQD 167
           SETRAAGKRPAEDD+PRKAKRKTNKGLA YLK+YKEAIHDMNFSNEDMIREFDNMA+V+D
Sbjct: 120 SETRAAGKRPAEDDIPRKAKRKTNKGLAQYLKQYKEAIHDMNFSNEDMIREFDNMARVED 179

Query: 168 EKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV 215
           ++RKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRD EDIPYV
Sbjct: 180 KRRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDTEDIPYV 227


>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
           sapiens]
          Length = 206

 Score =  184 bits (468), Expect = 4e-47
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 13/217 (5%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEKLY ENEG   N+  +E+E +P+DE   E     ++ K + E K + +GKT  E   +
Sbjct: 1   MEKLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKRE 55

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
           D+G+P  EG+ ++     EG  E +G SE E KP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 56  DEGEPGDEGQLED-----EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAED 110

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
            VPRKAKRKT++G     K+ +E + + + S+E+M+RE  ++++ Q+E RK KQK+G F 
Sbjct: 111 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 169

Query: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
           WMQR++QDPF PRG R  RG  G    ++D+ED+PYV
Sbjct: 170 WMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206


>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score =  182 bits (462), Expect = 2e-46
 Identities = 103/217 (47%), Positives = 143/217 (65%), Gaps = 19/217 (8%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEK Y++NEG   N+GK E+E +P DE K +     E++K + EGKTE +GK  DE    
Sbjct: 1   MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDVEGKTECEGKREDE---- 51

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
             G+P  EG+ ++     EG  E +G SE EGKP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 52  --GEPGDEGQLED-----EGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAED 104

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
            VPRKAKRKT++G     K+ +E + + + S+E+M+RE  ++++ Q+E RK KQK+G F 
Sbjct: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163

Query: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
           WMQR++QDPF PRG R  RG  G    +R + DIPY+
Sbjct: 164 WMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL 200


>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score =  182 bits (462), Expect = 2e-46
 Identities = 103/217 (47%), Positives = 143/217 (65%), Gaps = 19/217 (8%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEK Y++NEG   N+GK E+E +P DE K +     E++K + EGKTE +GK  DE    
Sbjct: 1   MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDVEGKTECEGKREDE---- 51

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
             G+P  EG+ ++     EG  E +G SE EGKP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 52  --GEPGDEGQLED-----EGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAED 104

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
            VPRKAKRKT++G     K+ +E + + + S+E+M+RE  ++++ Q+E RK KQK+G F 
Sbjct: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163

Query: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
           WMQR++QDPF PRG R  RG  G    +R + DIPY+
Sbjct: 164 WMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL 200


>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
           sapiens]
          Length = 183

 Score =  157 bits (398), Expect = 5e-39
 Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 17/190 (8%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           MEK Y++NEG   N+GK E+E +P DE K +     E++K + EGKTE +GK       K
Sbjct: 1   MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDAEGKTECEGKR------K 49

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
            +G+P  EG+ ++     +G  E +G SE EGKP+ EGKP S+ +P  + RAA KRPA D
Sbjct: 50  AEGEPGDEGQLED-----KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
            VPRKAKRKT++G     K+ +E + + + S+E+M+RE  ++++ Q+E RK KQK+G F 
Sbjct: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163

Query: 181 WMQRNLQDPF 190
           WMQR++QDPF
Sbjct: 164 WMQRDVQDPF 173


>gi|55743140 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58

Query: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42


>gi|55743147 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58

Query: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42


>gi|10047100 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58

Query: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42


>gi|55743145 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58

Query: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42


>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
          Length = 843

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 6/199 (3%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           E+     E     + + E E++ + ER+ E     +  K  +  +   + +  D E   D
Sbjct: 317 ERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSD 376

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRP-AED 120
           + K  S    K    ERE E E E   ERE + E E + E E E   E     KR   ED
Sbjct: 377 RNKDRSRSREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREED 436

Query: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKR----KSKQKL 176
           +     +RK  + L      Y+E + +         RE++  A+ ++E+R    K  ++L
Sbjct: 437 EEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRL 496

Query: 177 GAFLW-MQRNLQDPFYPRG 194
             FL     +  DP Y RG
Sbjct: 497 KEFLEDYDDDRDDPKYYRG 515



 Score = 37.4 bits (85), Expect = 0.010
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 18  MENEEQPQDERKPEVTCTLED-KKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKS 76
           +E EE  +D    E++   +  KKLE E   + K +   +E+ K++ + E E E +  + 
Sbjct: 267 IEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKER---QEIEKERRERERERERERERR 323

Query: 77  EREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAH 136
           ERE E E E   E+E + E E + + + +   E      R  + D  R+     NK  + 
Sbjct: 324 EREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSR 383

Query: 137 YLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
             ++ ++   +     E   RE +   + + E+ + +++
Sbjct: 384 SREKSRDRERERERERE---RERERERERERERERERER 419



 Score = 32.3 bits (72), Expect = 0.31
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDE-----EMLKDKGKPESEGEAKE 73
           ++ + P+  R   +   L D++ E E    ++ +  +E     + L  +G P+ + E + 
Sbjct: 505 DDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAELQR 564

Query: 74  GKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKR--PAEDD 121
                     ME  +ER  +P+I+ +PESE E   +     KR  P E++
Sbjct: 565 ----------MEQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEE 604


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKK-----LENEGKTENKGKTGDEEMLKD 61
           E EG    +GK E EE+ ++    E     E+++      E EGK E +G+ G+ E   +
Sbjct: 813 EVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGE 872

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGE-PGSETRAAGKRPAED 120
           +G+ E E E  EG+ E EGE E   G E EG    EG+ E EGE  G E    GK   E 
Sbjct: 873 EGEGEGEEEEGEGEGEEEGEGE---GEEEEG----EGEGEEEGEGEGEEEEGEGKGEEEG 925

Query: 121 D 121
           +
Sbjct: 926 E 926



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           E+   E EG    +G+ E EE   +E + E     E ++ E E + E     G+EE  + 
Sbjct: 827 EEEEEEGEG-EEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEG 885

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPG 107
           +G+ E EGE +E + E EGE E EG  E E   E EGK E EGE G
Sbjct: 886 EGEEEGEGEGEEEEGEGEGEEEGEGEGEEE---EGEGKGEEEGEEG 928



 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 5/128 (3%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
            E EG    +G+ E EE+ + E + E     E ++ E EGK E +G+ G+ E  +++G  E
Sbjct: 882  EGEGEGEEEGEGEGEEE-EGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEG--E 938

Query: 67   SEGEAKEGKSEREGESEMEGGSER-EGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRK 125
             EGE  EG+ E E E E EG  E  EG+ E EG+ E E   G      G+   E++   +
Sbjct: 939  GEGEDGEGEGEEE-EGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEE 997

Query: 126  AKRKTNKG 133
               +  +G
Sbjct: 998  EGEEEGEG 1005



 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
            E EG    +G+ E+ E   +E + E     E ++ E EG+ E +G+   EE   +  + E
Sbjct: 934  EEEG----EGEGEDGEGEGEEEEGE----WEGEEEEGEGEGEEEGEGEGEEGEGEGEEEE 985

Query: 67   SEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGE-PGSETRAAGKRPAEDDVPRK 125
             EGE +E + E EGE E EG  E EG+ E E + E EGE  G E    G+   E++   +
Sbjct: 986  GEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGE---EEEGEEE 1042

Query: 126  AKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
             + +  +G     +  +E   +     ++   E +     ++ K+ SK K
Sbjct: 1043 GEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSKIK 1092



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 7   ENEGMASNQGKMENE-EQPQDERKPEVTCTLEDKKLENEGKTENKGKTGD--EEMLKDKG 63
           E E     +GK E E E+ + ER+ E     ++++   E K E +G  G+  EE  + +G
Sbjct: 746 EEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRG 805

Query: 64  KPESE------GEAKEGKSEREGESEMEGGSEREG----------KPEIEGKPESEGEPG 107
           + + E      GE +EGK ERE E E   G E EG          + E EGK E EGE G
Sbjct: 806 EEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEG 865



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
            E EG    +G+    E  ++E + E     ED   E EG+ E     G+EE  + +G+ E
Sbjct: 916  EGEGKGEEEGEEGEGEGEEEEGEGEG----EDG--EGEGEEEEGEWEGEEEEGEGEGEEE 969

Query: 67   SEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKA 126
             EGE +EG+ E E E     G E EG  E EG+ E EGE   E    G+   E +V  + 
Sbjct: 970  GEGEGEEGEGEGEEEEGEGEGEEEEG--EEEGEEEGEGE--EEGEGEGEEEEEGEVEGEV 1025

Query: 127  KRKTNKG 133
            + +  +G
Sbjct: 1026 EGEEGEG 1032



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 2    EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
            E+   E EG    +G+ E E + ++E + EV   +E ++ E EG+ E   + G+E     
Sbjct: 991  EEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEER---- 1046

Query: 62   KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGK 115
                E EGE +E +  RE E       E EGK +  G+ E+E + G E +   K
Sbjct: 1047 ----EKEGEGEENRRNREEE------EEEEGKYQETGEEENERQDGEEYKKVSK 1090



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 2   EKLYSENEGMASNQGK-MENE-EQPQDERKPEVTCTLEDK-----------KLENEGKTE 48
           E+   E EG    +G+ +E E E+ + ERK E     E+K           + E EG+ E
Sbjct: 747 EEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGE 806

Query: 49  NKGKTGDEEMLK-DKGKPESEGEAKEGKSERE-GESEMEGGSEREGKPEIEGKPESEGEP 106
            K + G+ E  + ++GK E E E +EG+ E E GE E E G   E + E +G+ E E   
Sbjct: 807 EKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGE 866

Query: 107 GSETRAAGKRPAEDD 121
           G E    G+   E++
Sbjct: 867 GEEEGEEGEGEGEEE 881



 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGK-TENKGKTGDEEMLK 60
           EK  +E E      G+ + +++ +   + E    +E+   E  G+  E +G   +EE  +
Sbjct: 693 EKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKE 752

Query: 61  DKGKPESEGEAKEGKSER-EGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAE 119
            +GK E EGE  EG+ E+ EGE + E  + +E K E EG  + EGE   ET   G+   E
Sbjct: 753 GEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEG-DQGEGEE-EETEGRGEEKEE 810

Query: 120 DDVPRKAKRKTNKG 133
                  + +  KG
Sbjct: 811 GGEVEGGEVEEGKG 824



 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKT-----GDEEMLKD 61
            E EG    +G+ E EE   +  + E     E+++ E EG+ E +G+      G+EE   +
Sbjct: 961  EGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEE---E 1017

Query: 62   KGKPESEGEAKEGKSEREGESEMEGGSER----EGKPEIEGKPESEGEPGSETRAAGKRP 117
            +G+ E E E +EG+ E E E   E G ER    EG+     + E E E G       +  
Sbjct: 1018 EGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEEN 1077

Query: 118  AEDDVPRKAKRKTNKGLAHYLK 139
               D     K    KG   Y K
Sbjct: 1078 ERQDGEEYKKVSKIKGSVKYGK 1099



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 15/102 (14%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E EG    +G+ E EE+ + E         E+++ E EG+ E +G+ G+EE  + +GK E
Sbjct: 875 EGEG-EEEEGEGEGEEEGEGEG--------EEEEGEGEGEEEGEGE-GEEE--EGEGKGE 922

Query: 67  SEGEAKEGK-SEREGESEMEGGSEREGKPEIEGKPESEGEPG 107
            EGE  EG+  E EGE E E G E EG+ E EG+ E E E G
Sbjct: 923 EEGEEGEGEGEEEEGEGEGEDG-EGEGEEE-EGEWEGEEEEG 962



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTG-----DEEMLKD 61
           E E    ++G+ E E   + E+  E+    E KK + E + + + + G     ++EM + 
Sbjct: 673 EREKGEKDKGRGEMERPGEGEK--ELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEG 730

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPE-SEGEPGSETRAAGKRPAED 120
             +   EGE +EG  E E E E EG  E EG+ E+EG+ E  EGE   E RA  +   E+
Sbjct: 731 GEEEHGEGEEEEGDREEEEEKEGEGKEEGEGE-EVEGEREKEEGERKKEERAGKEEKGEE 789

Query: 121 D 121
           +
Sbjct: 790 E 790



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E EG    +G+ E EE   +E   E     E+++ E EG+ E +G+ G+EE  + +G+ E
Sbjct: 851 EEEG--EGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGE-GEEEEGEGEGEEE 907

Query: 67  SEGEAKE----GKSEREGES-----EMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRP 117
            EGE +E    GK E EGE      E E G       E EG+ E     G E    G+  
Sbjct: 908 GEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGE 967

Query: 118 AEDD 121
            E +
Sbjct: 968 EEGE 971



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E E+  +D+ + E+    E +K E   K E K + G+E+  K++     +G  KE   E 
Sbjct: 673 EREKGEKDKGRGEMERPGEGEK-ELAEKEEWKKRDGEEQEQKER----EQGHQKERNQEM 727

Query: 79  E--GESEMEGGSEREGKPEIEGKPESEG-EPGSETRAAGKRPAEDDVPRKAKR--KTNKG 133
           E  GE E   G E EG  E E + E EG E G      G+R  E+   +K +R  K  KG
Sbjct: 728 EEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKG 787



 Score = 32.3 bits (72), Expect = 0.31
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 8   NEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPES 67
           +EG A + G+ E+  + + +   E   +  +   + E +   K K   E  ++  G+ E 
Sbjct: 637 SEGKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGE--MERPGEGEK 694

Query: 68  EGEAKEGKSEREGES----EMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVP 123
           E   KE   +R+GE     E E G ++E   E+E   E E   G E    G R  E++  
Sbjct: 695 ELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEE--GDREEEEEKE 752

Query: 124 RKAKRK 129
            + K +
Sbjct: 753 GEGKEE 758



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 42  ENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKP----EIE 97
           E EG  ++KG   +E+ ++   +       ++ K+E   +   +     EGK     E E
Sbjct: 589 EKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAE 648

Query: 98  GKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG 133
             PE  G+   E  ++G    +D+   K ++   +G
Sbjct: 649 DGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRG 684


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 123

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E EE  + E + E     ++K+ E   + E K KT + E  K+K + E + + K  K + 
Sbjct: 12  ETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKE 71

Query: 79  EGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNK 132
           E E E E   E E K E E   + EG    + +   ++  E++  +K +RKT K
Sbjct: 72  EEEREEEEEEEEEEKEEEE---KEEGRRRKKKKKRRRKEEEEEKKKKRRRKTKK 122



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 20/116 (17%)

Query: 60  KDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAE 119
           K + +   E E  E + E+EG+ + +   +R+           E E   +T+   KR  +
Sbjct: 7   KKETEETEETEETEEEEEKEGKRKEKRKEKRK-----------EKEKKKKTKETEKRKEK 55

Query: 120 DDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
           ++  +K KRK  K      +E +E         E+   E +   K +  +RK K+K
Sbjct: 56  EEEEKKRKRKRKKKKEEEEREEEE---------EEEEEEKEEEEKEEGRRRKKKKK 102



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E EG    + K + +E+ + ++  E     E ++ E + K + K K  +EE  +++ + E
Sbjct: 24  EKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEE 83

Query: 67  SEGEAKE--------GKSEREGESEME 85
            E E +E         K +R  + E E
Sbjct: 84  EEKEEEEKEEGRRRKKKKKRRRKEEEE 110


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 19  ENEEQPQDE------RKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAK 72
           E EE+P+ E      +K  V  T  + K E   K E +G+  +EE  +D+G      +A+
Sbjct: 494 EKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEE--EDEG--AKSDQAE 549

Query: 73  EGKSEREGESEMEGGSEREGK-------PEIEGKPESEGEPGSETRAAGKRPAED---DV 122
           EG SE+EG SE E G + EG+        E E K E + E  SE  A  +    D   + 
Sbjct: 550 EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEK 609

Query: 123 PRKAKRKTNK 132
           P KAK    K
Sbjct: 610 PEKAKSPVPK 619



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           EK+  + E       K + E   ++E   EV    +  K+  E +T+ +GK   +E  K+
Sbjct: 716 EKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKE 775

Query: 62  K----GKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEG-----EPGSETRA 112
           K    G  E EG  K  K  R+ +  + G  E EGK E+E + + +G     E G  T  
Sbjct: 776 KAGGEGGSEEEGSDKGAKGSRKEDIAVNG--EVEGKEEVEQETKEKGSGREEEKGVVTNG 833

Query: 113 AGKRPAED 120
               PA++
Sbjct: 834 LDLSPADE 841



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 17  KMENEEQPQDERKPEVT----CTLEDKKLENEGKTENKGKTGDEEMLKDKGK-------- 64
           K+E+E+   +E    +T     +++++K E   + E + +  +EE+   K          
Sbjct: 461 KVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEV 520

Query: 65  PESEGEAKEGKSEREGESEMEGGSE---REGKPEIEG---KPESEGEPGSETRAAGKRPA 118
            E EGE +E + + E E E EG       EG  E EG   K E E E G     A    A
Sbjct: 521 KEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEA 580

Query: 119 EDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGA 178
           E    +K + K+ +     +   +E + D      +  +     + V+++ +    K   
Sbjct: 581 EAKEEKKVEEKSEE-----VATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP- 634

Query: 179 FLWMQRNLQDPFYPRGPREFRGGCRAPRRDIED 211
              ++   + P  P+ P E +G    P+  +E+
Sbjct: 635 ---VEEKGKSP-VPKSPVEEKGKSPVPKSPVEE 663



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 9   EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESE 68
           EG +  +G  E EE  Q+E + E     E+ + + E K E K     EE+     K E  
Sbjct: 550 EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKS----EEVAT---KEELV 602

Query: 69  GEAKEGKSEREGESEMEGGSEREGKPEIEGKP-ESEGE---PGSETRAAGKRPA-EDDVP 123
            +AK  K E+      +   E +GK  +   P E +G+   P S     GK P  +  V 
Sbjct: 603 ADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVE 662

Query: 124 RKAKRKTNK 132
            K K   +K
Sbjct: 663 EKGKSPVSK 671


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 19  ENEEQPQDE------RKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAK 72
           E EE+P+ E      +K  V  T  + K E   K E +G+  +EE  +D+G      +A+
Sbjct: 118 EKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEE--EDEG--AKSDQAE 173

Query: 73  EGKSEREGESEMEGGSEREGK-------PEIEGKPESEGEPGSETRAAGKRPAED---DV 122
           EG SE+EG SE E G + EG+        E E K E + E  SE  A  +    D   + 
Sbjct: 174 EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEK 233

Query: 123 PRKAKRKTNK 132
           P KAK    K
Sbjct: 234 PEKAKSPVPK 243



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           EK+  + E       K + E   ++E   EV    +  K+  E +T+ +GK   +E  K+
Sbjct: 340 EKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKE 399

Query: 62  K----GKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEG-----EPGSETRA 112
           K    G  E EG  K  K  R+ +  + G  E EGK E+E + + +G     E G  T  
Sbjct: 400 KAGGEGGSEEEGSDKGAKGSRKEDIAVNG--EVEGKEEVEQETKEKGSGREEEKGVVTNG 457

Query: 113 AGKRPAED 120
               PA++
Sbjct: 458 LDLSPADE 465



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 17  KMENEEQPQDERKPEVT----CTLEDKKLENEGKTENKGKTGDEEMLKDKGK-------- 64
           K+E+E+   +E    +T     +++++K E   + E + +  +EE+   K          
Sbjct: 85  KVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEV 144

Query: 65  PESEGEAKEGKSEREGESEMEGGSE---REGKPEIEG---KPESEGEPGSETRAAGKRPA 118
            E EGE +E + + E E E EG       EG  E EG   K E E E G     A    A
Sbjct: 145 KEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEA 204

Query: 119 EDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGA 178
           E    +K + K+ +     +   +E + D      +  +     + V+++ +    K   
Sbjct: 205 EAKEEKKVEEKSEE-----VATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP- 258

Query: 179 FLWMQRNLQDPFYPRGPREFRGGCRAPRRDIED 211
              ++   + P  P+ P E +G    P+  +E+
Sbjct: 259 ---VEEKGKSP-VPKSPVEEKGKSPVPKSPVEE 287



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 9   EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESE 68
           EG +  +G  E EE  Q+E + E     E+ + + E K E K     EE+     K E  
Sbjct: 174 EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKS----EEVAT---KEELV 226

Query: 69  GEAKEGKSEREGESEMEGGSEREGKPEIEGKP-ESEGE---PGSETRAAGKRPA-EDDVP 123
            +AK  K E+      +   E +GK  +   P E +G+   P S     GK P  +  V 
Sbjct: 227 ADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVE 286

Query: 124 RKAKRKTNK 132
            K K   +K
Sbjct: 287 EKGKSPVSK 295


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 25/208 (12%)

Query: 3   KLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDK 62
           ++ +  EG    + + + E + +++RK E     E ++    GK E KG+   EE  + K
Sbjct: 44  EIETRKEGKKERESERKKERREREKRKRE----REKERKRERGKKEKKGERKKEERERKK 99

Query: 63  GKPESEGEAKEGKSEREGESEME-GGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDD 121
            + E E +  E K +R+ + + E G + +EGK E E K E + E   E     +   ++ 
Sbjct: 100 RRREKENKEGEEKEKRKKKEKKERGRTSKEGK-ERERKEERKREERKERERKKEEREKER 158

Query: 122 VPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNE------------DMIREFDNMAKVQDEK 169
             ++ K++  K +    +E KE         E               RE     K ++E+
Sbjct: 159 ERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEER 218

Query: 170 RKSKQKLGAFLWMQRNLQDPFYPRGPRE 197
           +K +QK     W ++        RG RE
Sbjct: 219 KKERQKDRQTNWREKE-------RGKRE 239



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 35/166 (21%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 10  GMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEG 69
           G  S   + E E + + E K E     E ++ +   + E + +  ++E  +++GK E +G
Sbjct: 33  GWQSEIREREREIETRKEGKKE----RESERKKERREREKRKREREKERKRERGKKEKKG 88

Query: 70  EAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRK 129
           E K  K ERE +        +EG+ + + K + + E G  ++   +R  +++  R+ +++
Sbjct: 89  ERK--KEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKE 146

Query: 130 TNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
             +      KE +E   +     E   RE   + + ++E+++ ++K
Sbjct: 147 RER-----KKEEREKERE---RKERKKRERKQVGEKEEERKEKERK 184



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKG-KTGDEEMLK 60
           +K   +  G  S +GK   E + ++ERK E     E KK E E + E K  K  + + + 
Sbjct: 116 KKKEKKERGRTSKEGK---ERERKEERKREERKERERKKEEREKERERKERKKRERKQVG 172

Query: 61  DKGKPESEGEAKEGK----SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKR 116
           +K +   E E KE K    + +E + E E    RE K E + K E + E   + +   + 
Sbjct: 173 EKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKKERQKDRQTNWRE 232

Query: 117 PAEDDVPRKAKRK 129
                  RK ++K
Sbjct: 233 KERGKRERKERKK 245



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 32  VTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSERE 91
           V+C+   K     G      +   E   + +GK E E E K+ + ERE   + +   E+E
Sbjct: 20  VSCSHISKPCTQPGWQSEIREREREIETRKEGKKERESERKKERRERE---KRKREREKE 76

Query: 92  GKPEIEGKPESEGEPGSETRAAGKR-----PAEDDVPRKAKRKTNKGLAHYLKEYKEAIH 146
            K E  GK E +GE   E R   KR       E +   K K+K  K      KE KE   
Sbjct: 77  RKRE-RGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERER 135

Query: 147 DMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
                 E+  +E +   + ++++R+ K++
Sbjct: 136 KEERKREER-KERERKKEEREKERERKER 163



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENK-----GKTGDE 56
           EK      G    +G+ + EE+ + +R+ E     E ++ E   K E K      K G E
Sbjct: 74  EKERKRERGKKEKKGERKKEERERKKRRREKE-NKEGEEKEKRKKKEKKERGRTSKEGKE 132

Query: 57  EMLKDKGKPES--EGEAKEGKSEREGESEMEGGSERE--GKPEIEGKPESEGEPGSETRA 112
              K++ K E   E E K+ + E+E E +     ER+  G+ E E K +   E     R 
Sbjct: 133 RERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERN 192

Query: 113 AGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNED 154
             +R  E +   + +RK  +      K+ ++     N+  ++
Sbjct: 193 RKERKKERERKERRERKKERKKKEERKKERQKDRQTNWREKE 234


>gi|21361639 DIPB protein [Homo sapiens]
          Length = 344

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E  G    + K+E E + + E         E+ + E E ++E + +T  EE  +D+   E
Sbjct: 74  EGAGKEEAEVKVEQEREIESEAG-------EESESEEESESEEESET--EEESEDESDEE 124

Query: 67  SEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVP 123
           SE +++E + E E ESE E  ++ EG+ E EG+ E+E E   E     +R A+   P
Sbjct: 125 SEEDSEE-EMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP 180



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 4/112 (3%)

Query: 37  EDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEI 96
           +++++E+E   E++ +   E   + + + ESE E+ E +SE + E EME   E E + + 
Sbjct: 87  QEREIESEAGEESESEEESESEEESETEEESEDESDE-ESEEDSEEEMEDEQESEAEEDN 145

Query: 97  EGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKT---NKGLAHYLKEYKEAI 145
           + + ESE E  +E  +      E +  R AKRK       L+ Y +E ++ I
Sbjct: 146 QEEGESEAEGETEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLI 197



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 6   SENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKP 65
           SE+E  + ++ + E EE+ +DE   E   + ED + E E + E++ +  ++E    +G+ 
Sbjct: 99  SESEEESESEEESETEEESEDESDEE---SEEDSEEEMEDEQESEAEEDNQE----EGES 151

Query: 66  ESEGEAKEGKSEREGESEMEGGSEREGK 93
           E+EGE  E +SE + E EME  +ER  K
Sbjct: 152 EAEGET-EAESEFDPEIEME--AERVAK 176


>gi|11225260 DNA topoisomerase I [Homo sapiens]
          Length = 765

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 22/201 (10%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E++++   E+        +D + +++ K + K K G  E  KDK K   + + KE K   
Sbjct: 37  EHKKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRA 96

Query: 79  EGESEMEGGSER--EGKPEIEGKPESEG--EPGSETRAAGKRPAEDD----VPRKAKRKT 130
            G+++++   E      P+I+ +PE +G   P  E     KRP ++D     P+K K + 
Sbjct: 97  SGDAKIKKEKENGFSSPPQIKDEPEDDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTED 156

Query: 131 NKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKV--QDEKRKSKQKLGAFLWMQRNLQD 188
            K      KE K  + +         +  D   KV   D K+K  +K     W  +  ++
Sbjct: 157 TK------KEKKRKLEEEEDGKLKKPKNKDKDKKVPEPDNKKKKPKKEEEQKW--KWWEE 208

Query: 189 PFYPRGPR----EFRGGCRAP 205
             YP G +    E +G   AP
Sbjct: 209 ERYPEGIKWKFLEHKGPVFAP 229



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 9/164 (5%)

Query: 18  MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSE 77
           + N+ Q + + +   +   +DK  + E + +   K  D E  K       + E K    E
Sbjct: 6   LHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKH--KE 63

Query: 78  REGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAG----KRPAEDDVPRKAKRKTNKG 133
           +E     +G SE+      +   E   E   + RA+G    K+  E+      + K    
Sbjct: 64  KEKTKHKDGSSEKHKDKHKDRDKEKRKE--EKVRASGDAKIKKEKENGFSSPPQIKDEPE 121

Query: 134 LAHYLKEYKEAIHDMNFSNEDMIREF-DNMAKVQDEKRKSKQKL 176
              Y    KE I  +    ++   ++     K +D K++ K+KL
Sbjct: 122 DDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKKEKKRKL 165


>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
           [Homo sapiens]
          Length = 845

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 19  ENEEQPQDERKPEVTCTLE----DKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEG 74
           ++EE+ ++E+ P      E    +K +  E +   KGK G EE  K K KP+++  A + 
Sbjct: 139 QSEEEEEEEKHPPKPAKPEKNRINKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAALDN 198

Query: 75  KSE-REGESEMEGGSEREGK---PEIEGKPESEGEPGSETRAAGKRPAED---DVPRKAK 127
           + E +E E   E    ++GK    + E   E EGE   E    G+  A+D    + +K K
Sbjct: 199 EEEDKEEEIIKEKEPPKQGKEKAKKAEQGSEEEGEGEEEEEEGGESKADDPYAHLSKKEK 258

Query: 128 RKTNKGLAH-----YLKEYKEAIHDMNFSNEDM 155
           +K  K + +      LK    A +D + S  +M
Sbjct: 259 KKLKKQMEYERQVASLKAANAAENDFSVSQAEM 291



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 36/185 (19%), Positives = 81/185 (43%), Gaps = 19/185 (10%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           +K   E E +   + + + ++Q Q ++K +       K ++++G+ +        E LK 
Sbjct: 49  DKQAGEEEKVLKEKEQQQQQQQQQQKKKRDTRKGRRKKDVDDDGEEKEL-----MERLKK 103

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGS--------EREGKPEIEGKPESEGEPGSETRAA 113
              P S+ E +    +  G  + +GG+        + E + E E  P    +P  E    
Sbjct: 104 LSVPTSDEEDEVPAPKPRGGKKTKGGNVFAALIQDQSEEEEEEEKHPPKPAKP--EKNRI 161

Query: 114 GKRPAEDDVP----RKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEK 169
            K  +E+  P    +K K + +KG A    ++    ++     E++I+E +   + +++ 
Sbjct: 162 NKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKEPPKQGKEKA 221

Query: 170 RKSKQ 174
           +K++Q
Sbjct: 222 KKAEQ 226


>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
          Length = 282

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 2   EKLYSENEGMASNQGKMENE---EQPQDERKPEVTCTLEDKKLENEGKTENKGK-TGDEE 57
           E    + +G     GK   E   E+ +DE++       ED+K   +GK    GK  GD++
Sbjct: 168 EDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEE------EDRKETGDGKENEDGKEKGDKK 221

Query: 58  MLKDKGKPESEGEAKEGKSEREGESEMEGGSEREG-KPEIEGKPESE 103
             KD    E E E ++GK E EG +E E G E+E  K E EGK E E
Sbjct: 222 EGKDVKVKEDEKEREDGK-EDEGGNEEEAGKEKEDLKEEEEGKEEDE 267



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           E+  +E +G A  + K E  E+   E K       ED K + +GK    GK G+ E  K+
Sbjct: 134 EEDQNEEKGEAGKEDKDEKGEEDGKEDK-NGNEKGEDAKEKEDGKKGEDGK-GNGEDGKE 191

Query: 62  KGKPESEGE-AKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPA 118
           KG+ E E E  KE    +E E   E G ++EGK     + E E E G E     +  A
Sbjct: 192 KGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEA 249



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGK----TENKGKTGDEEMLKDK 62
           EN   A+ +G  E +E    E K E     ED++ +NE K     E+K + G+E+  +DK
Sbjct: 103 ENIEDATEKGG-EKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDK 161

Query: 63  GKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPG-SETRAAGKRPAEDD 121
              E   +AKE +  ++GE     G + + K E E + E   E G  +    GK   +  
Sbjct: 162 NGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKK 221

Query: 122 VPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
             +  K K ++      KE ++   D   + E+  +E +++ + ++ K + + K
Sbjct: 222 EGKDVKVKEDE------KEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIK 269



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 25/191 (13%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
           +E+ Y+EN    +  G+ +  E P  E++      +E K+   E  TE  G+  +    +
Sbjct: 72  VEEDYNEN----AKNGEAKITEAPASEKE-----IVEVKEENIEDATEKGGEKKEAVAAE 122

Query: 61  DKGKPESEGEAKEGKSEREGESEMEGGSER---EGKPEIEGKPESE----------GEPG 107
            K + E + E +E ++E +GE+  E   E+   +GK +  G  + E          GE G
Sbjct: 123 VKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDG 182

Query: 108 SETRAAGKRPAEDDVPRKAKRKTNKGLAH---YLKEYKEAIHDMNFSNEDMIREFDNMAK 164
                 GK   ED+   + +++T  G  +     K  K+   D+    ++  RE     +
Sbjct: 183 KGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDE 242

Query: 165 VQDEKRKSKQK 175
             +E+   K+K
Sbjct: 243 GGNEEEAGKEK 253



 Score = 31.2 bits (69), Expect = 0.70
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 7   ENEGMASNQGKMENEEQPQ--DERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGK 64
           E +   +  GK ENE+  +  D+++ +     ED+K   +GK +  G   +    K+  K
Sbjct: 199 EEDRKETGDGK-ENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLK 257

Query: 65  PESEGEAKEGKSEREGESE 83
            E EG+ ++   E +G+ E
Sbjct: 258 EEEEGKEEDEIKEDDGKKE 276



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 31/179 (17%)

Query: 13  SNQGKMENEEQPQDERKPEVTCTLEDKKLE---NEGKTENKGKTGDEEMLKDKGKPESEG 69
           S+  KM+ +    +E        + + K E    E   EN  K G+ ++ +    P SE 
Sbjct: 40  SSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNEN-AKNGEAKITE---APASEK 95

Query: 70  EAKEGKSEREGESEMEGGSEREG------------KPEIEGKPESEGEPGSETR-AAGKR 116
           E  E K E   ++  +GG ++E             K + E + E +GE G E +   G+ 
Sbjct: 96  EIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEE 155

Query: 117 PAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
             ++D     K    KG     KE  +   D   + E      D   K +DEK +  +K
Sbjct: 156 DGKED-----KNGNEKGEDAKEKEDGKKGEDGKGNGE------DGKEKGEDEKEEEDRK 203


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 9/120 (7%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
            E EG A  Q + E  E P+ E + +    +E  + E E + E++G    E   + + +PE
Sbjct: 2089 EAEGEA--QPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEA--EGEAQPE 2144

Query: 67   SEG-EAKEGKSEREGESE--MEGGSEREGKPEIEG--KPESEGEPGSETRAAGKRPAEDD 121
            SEG EA++ + E + ESE      +E E +PE+EG   PE+EGE   E+       AE +
Sbjct: 2145 SEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGE 2204



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 22/125 (17%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
            E+EG+ +     E E QP+ E        +E ++ E E + E +G    E   + + +PE
Sbjct: 2144 ESEGVEAQDA--EGEAQPESEG-------IEAQEAEEEAQPELEGVEAPEA--EGEAQPE 2192

Query: 67   SEG-EAKEGKSEREGESEMEG----GSEREGKPEIEG--KPESEGE--PGSETRAAGKRP 117
            SEG EA E  +E E + E+EG     +E E +PE EG   PE+EGE  P SE    G++ 
Sbjct: 2193 SEGIEAPE--AEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKK 2250

Query: 118  AEDDV 122
                V
Sbjct: 2251 GSPQV 2255



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 2    EKLYSENEGMASNQGKM------ENEEQPQDERKPEVTCTLEDKKLENEGKTENKG---- 51
            E+   E EG    + ++      E E QP+ E    +   +E ++ E E + E++     
Sbjct: 1944 EEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAP 2003

Query: 52   -KTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSET 110
               G+ +  +++ +PES+G   + KSE E   E+EG ++   K E + +PES+G    E 
Sbjct: 2004 EAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQ---KTEGDAQPESDGVEAPEA 2060

Query: 111  RAAGKRPAEDDV 122
                +  AE +V
Sbjct: 2061 EEEAQE-AEGEV 2071



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 9    EGMASNQGKMENEEQPQ-DERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPES 67
            E     +G+   EE  Q +E K E     E  +LE   +TE +G+  +E  L++  +   
Sbjct: 1305 ETKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGG 1364

Query: 68   EGEAKEGKSEREGESEMEGGSEREGKPE---IEGKPESEGEPGSETRAA----GKRPAED 120
            EG  +EG    E +   EGG + E   E    EG PE     G E   A    GK   ED
Sbjct: 1365 EGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQED 1424

Query: 121  D 121
            D
Sbjct: 1425 D 1425



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 20/149 (13%)

Query: 6    SENEGMASNQG---KMENEEQPQDE-----RKPEVTCTLEDKKLENEGKTENKGKTGDEE 57
            SE E     +G   K E + QP+ +        E     E +  E EG+   + +  D +
Sbjct: 2029 SEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQ 2088

Query: 58   MLKDKGKPESEG-EAKEGKSEREG-------ESEMEGGSEREG--KPEIEGK--PESEGE 105
              + + +PESEG EA E + E +        E+E E   E EG   PE EG+  PESEG 
Sbjct: 2089 EAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGV 2148

Query: 106  PGSETRAAGKRPAEDDVPRKAKRKTNKGL 134
               +     +  +E    ++A+ +    L
Sbjct: 2149 EAQDAEGEAQPESEGIEAQEAEEEAQPEL 2177



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 15/131 (11%)

Query: 7    ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKL---ENEGKTENKGKTGDEEMLKDKG 63
            E+E + + + + E + + +D   PE    ++ +       E + E + +T   E L+ +G
Sbjct: 1870 ESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEG 1929

Query: 64   K--PESEG----EAKEGKSEREGESEMEGG------SEREGKPEIEGKPESEGEPGSETR 111
            +  PESEG    EA+E   E EG+++ E        +E E +PE E     E E  ++  
Sbjct: 1930 EDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEA 1989

Query: 112  AAGKRPAEDDV 122
                +P  +DV
Sbjct: 1990 EGEAQPESEDV 2000



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 7    ENEGMASNQGKMENEEQPQ--DERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGK 64
            E EG A  Q ++E  E P+  +E +PE    +E  + E E + E++G+T  E+    KG 
Sbjct: 2200 EAEGEA--QPELEGVEAPEAEEEAQPEPE-GVETPEAEGEAQPESEGETQGEK----KGS 2252

Query: 65   PESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKR 116
            P+      +G+SE   ES      +R   P   G       PGS+T  +  R
Sbjct: 2253 PQVS--LGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSR 2302



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 25   QDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEM 84
            QD  + +    +E  + E E + E++G             PE+EG+A+E + E + ESE 
Sbjct: 1824 QDPGQSDGAEGIEAPEAEGEAQPESEGVEA----------PEAEGDAQEAEGEAQPESED 1873

Query: 85   EGGSEREGKPEIEGK----PESEGEPGSETRAAGKRPAEDD 121
                E EG+ + E +    PE+E E   E+  A    AE +
Sbjct: 1874 VEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKE 1914



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 1    MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLED-KKLENEGKTENKGKTGDEEML 59
            +E+     EG    +  ++ EE   +E   E    LE+ K+ E EG+ E + +  + E  
Sbjct: 1303 LEETKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEET 1362

Query: 60   KDKGKPESEGEAKEGKSEREGESE---MEGGSEREGKPEI--------------EGKPES 102
              +G  E   + +E K   EG  +   +E G + EG PE               +GK   
Sbjct: 1363 GGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQ 1422

Query: 103  EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAH 136
            E +P  E  A     + +  P +   +  +  +H
Sbjct: 1423 EDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSH 1456



 Score = 35.4 bits (80), Expect = 0.037
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 6    SENEGMASN-QGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGK 64
            +E + MA   +GK  N E        E     E + +   G+T  +G +G E+ L     
Sbjct: 1763 AEGDAMAQEREGKTHNSETSAGSELGEAE--QEGEGISERGETGGQG-SGHEDNL----- 1814

Query: 65   PESEGEAKEGKSEREGESEMEGG-----SEREGKPEIEGKPESEGEPGSETRAAGKRPAE 119
               +GEA  G  +  G+S+   G     +E E +PE EG    E E  ++      +P  
Sbjct: 1815 ---QGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPES 1871

Query: 120  DDV 122
            +DV
Sbjct: 1872 EDV 1874



 Score = 35.4 bits (80), Expect = 0.037
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 19   ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEG-EAKEGKSE 77
            E E++P+ E         E+   E EG+T+ + +  + +  +++ +PESE  EA E + E
Sbjct: 1928 EGEDEPESEGAEAQEA--EEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVE 1985

Query: 78   REGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAK 127
             +   E EG ++ E + ++E  PE+EGE       A  +P  D V  + K
Sbjct: 1986 TQ---EAEGEAQPESE-DVEA-PEAEGEMQEAEEEA--QPESDGVEAQPK 2028



 Score = 32.0 bits (71), Expect = 0.41
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 42   ENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGE---SEMEGGSEREGKPEIEG 98
            +  G  E +   G + + +DK     E E      EREG+   SE   GSE  G+ E EG
Sbjct: 1736 QGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSEL-GEAEQEG 1794

Query: 99   KPESE-GEPGSE 109
            +  SE GE G +
Sbjct: 1795 EGISERGETGGQ 1806



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/91 (24%), Positives = 40/91 (43%)

Query: 19   ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
            E E   +++R       L +  ++ E + E   +  + E L+++     E + +EG  E 
Sbjct: 1275 EAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEAVQLEETKTEEGLQEE 1334

Query: 79   EGESEMEGGSEREGKPEIEGKPESEGEPGSE 109
              + E    +E EG+ E E + E   E G E
Sbjct: 1335 GVQLEETKETEGEGQQEEEAQLEEIEETGGE 1365


>gi|157738619 smoothelin-like 1 [Homo sapiens]
          Length = 512

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 4   LYSENEGMASNQGKMENEEQPQ--DERKPEVTCTLEDKKLEN----------EGKTENKG 51
           L SE +     + K E+ ++    D  KPE   T+E++  +           E  TE K 
Sbjct: 150 LASEKQKAEEKEAKPESGQKADANDRDKPEPKATVEEEDAKTASQEETGQRKECSTEPKE 209

Query: 52  KTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGS 108
           K  DEE   +  K   E EAK    E +G+ E + G++ E   + E +   E EPGS
Sbjct: 210 KATDEEAKAESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGS 266



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 1   MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKK-LENEGKTENKGKTGDEEML 59
           ++++  E++  A  +   E E + +D  K E T   ++    + E K+E K     E  L
Sbjct: 91  LDEVKVESQREAGGKEDAEAELKKEDGEKEETTVGSQEMTGRKEETKSEPKEAEEKESTL 150

Query: 60  KDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAE 119
             + +   E EAK    ++   ++ +    +    E + K  S+ E G + +     P E
Sbjct: 151 ASEKQKAEEKEAKPESGQKADANDRDKPEPKATVEEEDAKTASQEETG-QRKECSTEPKE 209

Query: 120 DDVPRKAKRKTNKGL 134
                +AK ++ K +
Sbjct: 210 KATDEEAKAESQKAV 224



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 17  KMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGE--AKEG 74
           K  +EE   + +K  V    + +  E +GK E K    +E   K++ +   E E  +   
Sbjct: 210 KATDEEAKAESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGSPSE 269

Query: 75  KSEREGESEMEGG-----SEREGKPEIEGKPESEGE------------PGSETRAAGKRP 117
           + E++ E E EGG     S  E  PE    P  EG                +T  +    
Sbjct: 270 EQEQDVEKEPEGGAGVIPSSPEEWPE---SPTGEGHNLSTDGLGPDCVASGQTSPSASES 326

Query: 118 AEDDVPRKAKRKTNKG 133
           +  DVP+      + G
Sbjct: 327 SPSDVPQSPPESPSSG 342



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 25/159 (15%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKT--ENKGKTGDE-------E 57
           E++  A  + KME +E    E    V+   ++ ++   G    E KG  G         E
Sbjct: 8   ESDCSAEAREKMEQKEGKLSEDGTTVSPAADNPEMSGGGAPAEETKGTAGKAINEGPPTE 67

Query: 58  MLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSE-------- 109
             K +  P  +G + E + E  G  E++  S+RE      GK ++E E   E        
Sbjct: 68  SGKQEKAPAEDGMSAELQGEANGLDEVKVESQREAG----GKEDAEAELKKEDGEKEETT 123

Query: 110 ---TRAAGKRPAEDDVPRKAKRKTNKGLAHYLK-EYKEA 144
                  G++      P++A+ K +   +   K E KEA
Sbjct: 124 VGSQEMTGRKEETKSEPKEAEEKESTLASEKQKAEEKEA 162


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 17  KMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKE--- 73
           K+++EE+ +   K E    + +++ E    TE   +  ++E  +++GK E  GE +E   
Sbjct: 437 KVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEG 496

Query: 74  GKSEREGESEMEGGS-EREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAK 127
           G+ E +     E  S E+E K  ++ + +S  E  S  +   K PAE   P KAK
Sbjct: 497 GEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAK 551



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 18  MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSE 77
           ++ EE+PQ+ +  E     E++K     KTE K  +  EE  K +       E KE   E
Sbjct: 824 VKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVE 883

Query: 78  REGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHY 137
           +  ES++E   E     +    PE E     E +   K   + +V +K            
Sbjct: 884 KPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSK 943

Query: 138 LKEYKEAIHDMNFSNEDMIREFDNMAKV-----QDEKRKSKQ 174
             E KEA  +   + E+  ++ +   K      +D+K  SK+
Sbjct: 944 PAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKE 985



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E  + P + + PE          + E K+  + K+ ++E  K   + +S  +AK    E 
Sbjct: 536 EEAKSPAEVKSPEKA----KSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKE- 590

Query: 79  EGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNK 132
           E +S  E  S  + K  ++ + +S  E  S  +   K PAE   P KAK  T +
Sbjct: 591 EAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKE 644



 Score = 36.2 bits (82), Expect = 0.022
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 15   QGKMENEEQPQDERKPEVTCTLEDK--KLENEGKTENKGKTGDEEMLKDKGKPESEGEAK 72
            + K  ++   + E  PE   T E+K  K E + KTE K K  D+ + K+  KP++E   K
Sbjct: 937  KAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEK 996

Query: 73   EGKSEREGESEMEGGSE 89
               ++++     E  +E
Sbjct: 997  SSSTDQKDSKPPEKATE 1013



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E  + P + + P      E+ K   E K+  K K+  +E  K   K +S  E +E KS  
Sbjct: 610 EEAKSPAEAKSP----VKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSP-EKEEAKSPE 664

Query: 79  EGESEM--EGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAH 136
           + +S +  E  S  + K  ++ + +S  +  S  +   K P +   P K + K+ +    
Sbjct: 665 KAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS 724

Query: 137 YLKE 140
            +KE
Sbjct: 725 PVKE 728



 Score = 32.7 bits (73), Expect = 0.24
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E++  A  +   + ++ P  E++      +++     E KTE   K  D+   K+  KP 
Sbjct: 887 ESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKE-KTEVAKKEPDDAKAKEPSKP- 944

Query: 67  SEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKA 126
              E KE   E++   E     E+  KPE   KP++E +   + +   K P++    +  
Sbjct: 945 --AEKKEAAPEKKDTKE-----EKAKKPE--EKPKTEAKAKEDDKTLSKEPSKPKAEKAE 995

Query: 127 K 127
           K
Sbjct: 996 K 996



 Score = 32.3 bits (72), Expect = 0.31
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 17   KMENEEQPQDERKPEVTCTLED--------KKLENEGKTENKGKTGDEEMLKDKGKPESE 68
            K+E +E  + + K EV     D        K  E +     K  T +E+  K + KP++E
Sbjct: 913  KVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTE 972

Query: 69   GEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAA 113
             +AKE       E       + E     + K     E  +E +AA
Sbjct: 973  AKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKATEDKAA 1017



 Score = 31.2 bits (69), Expect = 0.70
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 19  ENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSER 78
           E  + P+  + PE   TL+ K  E +   + + ++   +   +K K   + E K  +  +
Sbjct: 742 EEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARS-PADKFPEKAKSPVKEEVKSPEKAK 800

Query: 79  EGESEMEGGSERE--GKPEIEGKPESEGEPGS-ETRAAGKRPAEDDVPRKAKRKTNKGLA 135
               E     E+E   K E++   + E +P   + +   K+  E+  P   K +  K   
Sbjct: 801 SPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSK 860

Query: 136 HYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQK 175
                 KEA        ++   E    +KV+ +K +++ K
Sbjct: 861 KEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDK 900



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 19  ENEEQPQDERKP--EVTCTLEDKK--LENEGKTENKGKTGDEEMLKDKGKPESEGEAKEG 74
           E  + P+  + P  E   T E  K  ++ E K+  K K+ ++    D   PE++  AKE 
Sbjct: 714 EEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKE- 772

Query: 75  KSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKT 130
               E  S  +   E+   P ++ + +S  +  S  +   K P E ++P+K + K+
Sbjct: 773 ----EARSPADKFPEKAKSP-VKEEVKSPEKAKSPLKEDAKAP-EKEIPKKEEVKS 822


>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 31/159 (19%)

Query: 22  EQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGE 81
           E+P DE+K E T   ED     EG +EN  K    E   ++G PE E E  EG  +R  E
Sbjct: 423 EEPIDEKKFEKT---EDGGEFEEGASENNAKESSPEKEAEEGCPEKESE--EGCPKRGFE 477

Query: 82  SEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRK-AKRKTNKGLAHYLKE 140
                    EG P                     R +E+D P+K +K+KT K        
Sbjct: 478 GSCSQKESEEGNP--------------------VRGSEEDSPKKESKKKTLKNDCEENGL 517

Query: 141 YKEAIHDMNFSNEDMI-----REFDNMAKVQDEKRKSKQ 174
            KE+  D+N  +E+ +      E D+  K  DE    KQ
Sbjct: 518 AKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQ 556



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 6   SENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLE-NEGKTENKGKTGDEEMLKDKGK 64
           SE E   +   K  +EE  + E    V     DK+LE N+ +       G E++L ++G 
Sbjct: 561 SEREFEENGLEKDLDEEGSEKELHENVL----DKELEENDSENSEFEDDGSEKVLDEEG- 615

Query: 65  PESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPR 124
             SE E  E   E+E   E E   E+    E + K + E        AA K+  E D   
Sbjct: 616 --SEREFDEDSDEKE---EEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADE 670

Query: 125 KAKRKTNKGLAHYLKEYKEAI-HDMNFSNEDMIREFDNMAKVQDEKRKSKQKL 176
           K   +++       KE ++A   ++  ++E +  + D+  K+ DE+  S +KL
Sbjct: 671 KLFEESDD------KEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKL 717



 Score = 36.2 bits (82), Expect = 0.022
 Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 30/197 (15%)

Query: 9   EGMASNQGKMENEEQPQDERKPEVTCT-------LEDKKLENEGKTENKGKTGDEEMLKD 61
           EG + N  K  + E+  +E  PE            E    + E +  N  +  +E+  K 
Sbjct: 442 EGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKK 501

Query: 62  KGKP-------ESEGEAKEGKSEREGESEMEGGSEREG------KPEIEGKPESEGEPGS 108
           + K        E  G AKE + +   ESE E G  +E       K   E   E + E GS
Sbjct: 502 ESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGS 561

Query: 109 ETRAAGKRPAEDDVPRKAKRK------TNKGLAHYLKEYKEAIHDMN---FSNEDMIREF 159
           E R   +   E D+  +   K       +K L     E  E   D +      E   REF
Sbjct: 562 E-REFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREF 620

Query: 160 DNMAKVQDEKRKSKQKL 176
           D  +  ++E+  + +K+
Sbjct: 621 DEDSDEKEEEEDTYEKV 637


>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 31/159 (19%)

Query: 22  EQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGE 81
           E+P DE+K E T   ED     EG +EN  K    E   ++G PE E E  EG  +R  E
Sbjct: 423 EEPIDEKKFEKT---EDGGEFEEGASENNAKESSPEKEAEEGCPEKESE--EGCPKRGFE 477

Query: 82  SEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRK-AKRKTNKGLAHYLKE 140
                    EG P                     R +E+D P+K +K+KT K        
Sbjct: 478 GSCSQKESEEGNP--------------------VRGSEEDSPKKESKKKTLKNDCEENGL 517

Query: 141 YKEAIHDMNFSNEDMI-----REFDNMAKVQDEKRKSKQ 174
            KE+  D+N  +E+ +      E D+  K  DE    KQ
Sbjct: 518 AKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQ 556



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 6   SENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLE-NEGKTENKGKTGDEEMLKDKGK 64
           SE E   +   K  +EE  + E    V     DK+LE N+ +       G E++L ++G 
Sbjct: 561 SEREFEENGLEKDLDEEGSEKELHENVL----DKELEENDSENSEFEDDGSEKVLDEEG- 615

Query: 65  PESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPR 124
             SE E  E   E+E   E E   E+    E + K + E        AA K+  E D   
Sbjct: 616 --SEREFDEDSDEKE---EEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADE 670

Query: 125 KAKRKTNKGLAHYLKEYKEAI-HDMNFSNEDMIREFDNMAKVQDEKRKSKQKL 176
           K   +++       KE ++A   ++  ++E +  + D+  K+ DE+  S +KL
Sbjct: 671 KLFEESDD------KEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKL 717



 Score = 36.2 bits (82), Expect = 0.022
 Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 30/197 (15%)

Query: 9   EGMASNQGKMENEEQPQDERKPEVTCT-------LEDKKLENEGKTENKGKTGDEEMLKD 61
           EG + N  K  + E+  +E  PE            E    + E +  N  +  +E+  K 
Sbjct: 442 EGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKK 501

Query: 62  KGKP-------ESEGEAKEGKSEREGESEMEGGSEREG------KPEIEGKPESEGEPGS 108
           + K        E  G AKE + +   ESE E G  +E       K   E   E + E GS
Sbjct: 502 ESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGS 561

Query: 109 ETRAAGKRPAEDDVPRKAKRK------TNKGLAHYLKEYKEAIHDMN---FSNEDMIREF 159
           E R   +   E D+  +   K       +K L     E  E   D +      E   REF
Sbjct: 562 E-REFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREF 620

Query: 160 DNMAKVQDEKRKSKQKL 176
           D  +  ++E+  + +K+
Sbjct: 621 DEDSDEKEEEEDTYEKV 637


>gi|4557509 cylicin 2 [Homo sapiens]
          Length = 348

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 40/204 (19%)

Query: 2   EKLYSENEGMASNQGKMENEE------QPQDERKPEVTCTLEDKKLENEGK---TENKGK 52
           EKL ++ +   S +GK + E+      + +DE+        +DKK  N+GK   TE++G+
Sbjct: 153 EKLDAKKD---SKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGE 209

Query: 53  TGDEEMLKDKGKPES----------EGEAKEGKSEREGESEMEGGSE-----------RE 91
            G  E    KGK +S          +    + K + +G+ +   G E           ++
Sbjct: 210 KGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDAKKDAKEIKK 269

Query: 92  GKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFS 151
           GK + +    ++ +   + +   K+ A  D  + AK+ T K  A   K+ K+       +
Sbjct: 270 GKKDKKKPSSTDSDSKDDVKKESKKDATKDAKKVAKKDTEKESADSKKDAKKN------A 323

Query: 152 NEDMIREFDNMAKVQDEKRKSKQK 175
            +D  ++    AK +DEK+ +K+K
Sbjct: 324 KKDAKKDAKKNAK-KDEKKDAKKK 346



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 7   ENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPE 66
           E +  A+  GK   ++  Q +     +   + KK   +GK   KGK  +E++   K   +
Sbjct: 106 EVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSKKGKDIEKGK--EEKLDAKKDSKK 163

Query: 67  SEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKA 126
            + +A++GK       + +GG++++ K +   K +S     S T + G++   +   +K 
Sbjct: 164 GKKDAEKGKDSATESEDEKGGAKKDNKKD---KKDSNKGKDSATESEGEKGGTEKDSKKG 220

Query: 127 KRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQ 174
           K+ + KG    ++   +A+      +ED  ++ +   + +D K+ +K+
Sbjct: 221 KKDSKKGKDSAIE--LQAVKADEKKDEDGKKDANKGDESKDAKKDAKE 266



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 39  KKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSERE---GKPE 95
           + +E + K    GK G+++  + K   +SE E K+GK + +   ++E G E +    K  
Sbjct: 103 RTVEVDSKAAEIGKKGEDKTTQ-KDTTDSESELKQGKKDSKKGKDIEKGKEEKLDAKKDS 161

Query: 96  IEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG 133
            +GK ++E    S T +  ++       +K K+ +NKG
Sbjct: 162 KKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKG 199


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKD 61
           E+ YSE+E   + + ++ +++Q +  R  +     E ++ E + + E K K   EE  ++
Sbjct: 341 EEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMK-EKEEEEMKKEEEMKKKEEKEEEEEE 399

Query: 62  KGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSE 109
           + K + E E    K+E EGES+ E   + +G  + EG+P+   +PG+E
Sbjct: 400 EMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQ--DPGTE 445



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 3   KLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDK 62
           +L+S+++       + E +E+ ++E K E     +++K E E + E K K  +EE+   +
Sbjct: 356 RLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEK-EEEEEEEMKQKEEEEEI---R 411

Query: 63  GKPESEGEAKEGKSEREGESEMEGGSEREGKPEIE-GKPESEGEPGSE 109
            K E EGE+K+ + E E     +GG + EG+P+ + G  E+ GE   E
Sbjct: 412 NKNEEEGESKDEEDEDE-----DGGQKPEGEPQQDPGTEETYGEVEEE 454



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 26/90 (28%), Positives = 42/90 (46%)

Query: 20  NEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGKSERE 79
           NEE+ +DE         E ++     K + K     ++ +K+K + E + E +  K E +
Sbjct: 334 NEEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEK 393

Query: 80  GESEMEGGSEREGKPEIEGKPESEGEPGSE 109
            E E E   ++E + EI  K E EGE   E
Sbjct: 394 EEEEEEEMKQKEEEEEIRNKNEEEGESKDE 423



 Score = 32.0 bits (71), Expect = 0.41
 Identities = 31/180 (17%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 2   EKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEE---- 57
           +++  + E     + +M+ +E+ ++E + E+    E++++ N+ + E + K  ++E    
Sbjct: 371 QEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDG 430

Query: 58  -------MLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSET 110
                    +D G  E+ GE +E   +   + +++   E E  P           P S  
Sbjct: 431 GQKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEME--PTFVHASSQTSGPTSGY 488

Query: 111 RAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKR 170
            A     A   + + ++R+    +   L E     +   +S+  +IR    + + Q  +R
Sbjct: 489 HAENFLGASPPIIQPSRRRNQNRVP--LLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRR 546


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.304    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,973,507
Number of Sequences: 37866
Number of extensions: 549317
Number of successful extensions: 8387
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 591
Number of HSP's that attempted gapping in prelim test: 3174
Number of HSP's gapped (non-prelim): 3755
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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