Guide to the Human Genome
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Name: TCEAL3 Sequence: fasta or formatted (200aa) NCBI GI: 14249718
Description:

transcription elongation factor A (SII)-like 3

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [200aa] transcription elongation factor A (SII)-like 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          8           2
 C cysteine            1.0          2           1
 D aspartate           9.0         18           2
 E glutamate          17.0         34           3
 F phenylalanine       1.0          2           1
 G glycine            13.0         26           3
 H histidine           1.5          3           1
 I isoleucine          0.5          1           1
 K lysine              9.5         19           2
 L leucine             3.5          7           1
 M methionine          2.5          5           2
 N asparagine          2.0          4           1
 P proline             7.5         15           1
 Q glutamine           7.0         14           1
 R arginine            9.0         18           1
 S serine              5.0         10           2
 T threonine           1.5          3           1
 V valine              3.5          7           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription elongation factor A (SII)-like 3 [Homo... 
TCEAL3                1.000   transcription elongation factor A (SII)-like 3 [Homo...
TCEAL5                0.891   transcription elongation factor A (SII)-like 5 [Homo...
TCEAL6                0.835   transcription elongation factor A (SII)-like 6 [Hom...
TCEAL4                0.398   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.398   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.398   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL4                0.398   transcription elongation factor A (SII)-like 4 [Homo...
TCEAL2                0.371   transcription elongation factor A (SII)-like 2 [Homo...
RPGR                  0.089   retinitis pigmentosa GTPase regulator isoform C [Hom...
TCEAL8                0.079   transcription elongation factor A (SII)-like 8 [Homo...
TCEAL8                0.079   transcription elongation factor A (SII)-like 8 [Homo...
RP1L1                 0.076   retinitis pigmentosa 1-like 1 
NSBP1                 0.074   nucleosomal binding protein 1 
NCL                   0.074   nucleolin 
TRIM44                0.063   DIPB protein 
SLC24A1               0.063   solute carrier family 24 (sodium/potassium/calcium ex...
LOC100133599          0.061   PREDICTED: hypothetical protein 
MYT1                  0.061   myelin transcription factor 1 
NEFM                  0.061   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.061   neurofilament, medium polypeptide 150kDa isoform 2 ...
LEO1                  0.058   Leo1, Paf1/RNA polymerase II complex component, homo...
WBP5                  0.056   WW domain binding protein 5 
WBP5                  0.056   WW domain binding protein 5 
WBP5                  0.056   WW domain binding protein 5 
WBP5                  0.056   WW domain binding protein 5 
COL7A1                0.056   alpha 1 type VII collagen precursor 
TCHH                  0.056   trichohyalin 
RPTN                  0.056   repetin 
ACIN1                 0.056   apoptotic chromatin condensation inducer 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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