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Search of human proteins with 55743126
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55743126 receptor-interacting factor 1 isoform 2 [Homo
sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55743126 receptor-interacting factor 1 isoform 2 [Homo sapiens] 465 e-131
gi|55743124 receptor-interacting factor 1 isoform 1 [Homo sapiens] 465 e-131
gi|87299628 biorientation of chromosomes in cell division 1-like... 39 0.003
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 39 0.003
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 38 0.007
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 37 0.019
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 36 0.025
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 36 0.032
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 35 0.042
gi|14670375 SCG10-like-protein [Homo sapiens] 35 0.072
gi|21361891 SH2 domain containing 4A [Homo sapiens] 34 0.12
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.16
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 33 0.16
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 33 0.16
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 33 0.21
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 33 0.21
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 33 0.21
gi|5729953 nuclear distribution gene C homolog [Homo sapiens] 33 0.21
gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens] 33 0.27
gi|44890052 stathmin 1 isoform a [Homo sapiens] 32 0.36
gi|44890050 stathmin 1 isoform a [Homo sapiens] 32 0.36
gi|5031851 stathmin 1 isoform a [Homo sapiens] 32 0.36
gi|133778961 testis expressed 15 [Homo sapiens] 32 0.36
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 32 0.47
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 32 0.47
gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [H... 32 0.61
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 32 0.61
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 32 0.61
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 32 0.61
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 32 0.61
>gi|55743126 receptor-interacting factor 1 isoform 2 [Homo sapiens]
Length = 233
Score = 465 bits (1196), Expect = e-131
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG 60
MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG
Sbjct: 1 MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG 60
Query: 61 FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING 120
FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING
Sbjct: 61 FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING 120
Query: 121 EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ 180
EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ
Sbjct: 121 EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ 180
Query: 181 SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
Sbjct: 181 SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
>gi|55743124 receptor-interacting factor 1 isoform 1 [Homo sapiens]
Length = 769
Score = 465 bits (1196), Expect = e-131
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG 60
MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG
Sbjct: 537 MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEG 596
Query: 61 FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING 120
FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING
Sbjct: 597 FDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIING 656
Query: 121 EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ 180
EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ
Sbjct: 657 EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQ 716
Query: 181 SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
Sbjct: 717 SHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 769
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 39.3 bits (90), Expect = 0.003
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 61/205 (29%)
Query: 81 KEGERKQQNFDKKRKAKTNKKMDHIKK-------------------------RKTENAYN 115
++GERK K++K KT KK DH KK K N
Sbjct: 330 EKGERK-----KEKKEKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNSNKAK 384
Query: 116 AI-------------INGEANVTGSQLLSSILP-----------TSDVSQHNILTSHSKT 151
+ ++G ++T S + +S L TSD + +TS +
Sbjct: 385 TVEGTKEDFSLIDSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVTSDSMEEGEITSDDE- 443
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAY-EQSHFFNKNYTEDIFPVTPPELEETIRDEKIR 210
+ K+ + + T + E T + AY + + ++K Y++ +T + ++I EK
Sbjct: 444 EKNKQNKTKTQTSDSSEGKTKSVRHAYVHKPYLYSKYYSDSDDELTVEQRRQSIAKEKEE 503
Query: 211 RL--KQVLREKEAALEEMRKKMHQK 233
RL +Q+ REK LEE RK+ +K
Sbjct: 504 RLLRRQINREK---LEEKRKQKAEK 525
Score = 30.0 bits (66), Expect = 1.8
Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 15 KKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGF--DSFSSLVKSGT 72
K S+ SNKA ++ E + D +T H + F D+ +V S +
Sbjct: 373 KLPSEKNSNKAKTVEGTKEDFSLIDSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVTSDS 432
Query: 73 YKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAII-----------NGE 121
+E E + E+ +QN KT + + KT++ +A + + +
Sbjct: 433 MEEGEITSDDEEKNKQN-------KTKTQTSDSSEGKTKSVRHAYVHKPYLYSKYYSDSD 485
Query: 122 ANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQS 181
+T Q SI + + K +EKR + T + KG S+ E+S
Sbjct: 486 DELTVEQRRQSIAKEKEERLLRRQINREKL-EEKRKQKAEKTKSSKTKGQGRSSVDLEES 544
Query: 182 HFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKK 229
T+ + P ++E +++ K+ EK+ AL + RKK
Sbjct: 545 S------TKSLEP-KAARIKEVLKERKV-------LEKKVALSKKRKK 578
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 39.3 bits (90), Expect = 0.003
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 26/193 (13%)
Query: 55 LTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAY 114
L E + F + V SGT +V+E E +++ +KR + N + K+++T
Sbjct: 1040 LCERESANGFETNVASGT---CSIIVQERESREKG--QKRPSDGNSGLMAKKQKRTPKRT 1094
Query: 115 NAIINGEANVTGSQLLSSILPTSDVSQHNILTSH---SKTRQEKRTEMEYYTHEK----- 166
+A E N TG S LP D S H SK ++ R+ H K
Sbjct: 1095 SAAAKNEKNGTGQSSDSEDLPVLDNSSKCTPVKHLNVSKPQKLARSPARISPHIKDGEKD 1154
Query: 167 --QEKGTLNSNAAYEQSHFFNK----NYTEDIFPVTPPELEETIRDEKIRRLKQVLREKE 220
+EK +S Y+ S N+ N TE I L+E + ++IR+ L+ +
Sbjct: 1155 KHREKHPNSSPRTYKWSFQLNELDNMNSTERI-----SFLQEKL--QEIRKYYMSLKSEV 1207
Query: 221 AALEEMRKKMHQK 233
A ++ RK++ +K
Sbjct: 1208 ATIDRRRKRLKKK 1220
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 38.1 bits (87), Expect = 0.007
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 33/162 (20%)
Query: 92 KKRKAKTNKKMDHIKKRKTENAYNAI-----------------INGEANVTGSQLLS-SI 133
K++ AK +K+ ++ K+E N + EA+ G +L S S
Sbjct: 208 KEKNAKLQEKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKELQSVSA 267
Query: 134 LPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIF 193
+ V ++ + ++ ++EK E E++EK EQ +
Sbjct: 268 KLQAQVEENELWNRLNQQQEEKMWRQEEKIQEREEKIQEQEEKIREQEEKMRRQ------ 321
Query: 194 PVTPPELEETI--RDEKIRRLKQVLREKEAALEEMRKKMHQK 233
EE + ++EK+RR ++++ EKE + E+ +KMH++
Sbjct: 322 -------EEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQ 356
Score = 31.2 bits (69), Expect = 0.79
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 153 QEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYT---EDIFPVTPPELEETIRDEKI 209
QEKR E E ++EK EQ + E + E E ++EK+
Sbjct: 375 QEKRQEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEEKM 434
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
RR ++ +RE+E + E +K+ ++
Sbjct: 435 RRQEEKIREQEKKIREQEEKIREQ 458
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKI 209
+ ++EK E E E++EK EQ + E + E + ++EK+
Sbjct: 491 RRQEEKIREQEKKIREQEEKIREQEEMMQEQE----EKMWEQEEKMCEQEEKMQEQEEKM 546
Query: 210 RRLKQVLREKEAALEEMRKKMHQ 232
RR ++ +RE+E L + +KM +
Sbjct: 547 RRQEEKMREQEVRLRQQEEKMQE 569
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKI 209
+ ++EK E E E++EK EQ + E + E + ++EK+
Sbjct: 435 RRQEEKIREQEKKIREQEEKIREQEEMMQEQE----EKMGEQEGKMCEQEAKMQEQEEKM 490
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
RR ++ +RE+E + E +K+ ++
Sbjct: 491 RRQEEKIREQEKKIREQEEKIREQ 514
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR 211
++EK E+E HE QEK E+ + ++ E + ++EKIR
Sbjct: 342 KEEKIRELEEKMHE-QEKIREQEEKRQEEEKIREQEKRQE------QEAKMWRQEEKIRE 394
Query: 212 LKQVLREKEAALEEMRKKMHQK 233
++ +RE+E ++E +KM ++
Sbjct: 395 QEEKIREQEEMMQEQEEKMGEQ 416
Score = 28.5 bits (62), Expect = 5.2
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDE-- 207
+ ++EK E E E++EK EQ + + EE IR++
Sbjct: 449 REQEEKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEK------MRRQEEKIREQEK 502
Query: 208 KIRRLKQVLREKEAALEEMRKKMHQK 233
KIR ++ +RE+E ++E +KM ++
Sbjct: 503 KIREQEEKIREQEEMMQEQEEKMWEQ 528
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 36.6 bits (83), Expect = 0.019
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 4 TSDKGAQGRNDKKD--SQGRSNKALHLKSDAEFKKI----FGLTKDLRVCLTRIPDHLTS 57
TS GR K+ S G+ N H K + +K + +D C+ + + +S
Sbjct: 745 TSISSDDGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSS 804
Query: 58 GE-GFDSFSSLVK---SGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRK-TEN 112
+ DS S V+ S KE + ++ KQ+ + K+K+ ++ H KKR EN
Sbjct: 805 LDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKSERECPHSKKRTLKEN 864
Query: 113 AYNAIING----EANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEK 155
+ + NG N GS+ S DV++++ SH + +E+
Sbjct: 865 LSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKEE 911
Score = 31.6 bits (70), Expect = 0.61
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 86 KQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNIL 145
K+ + K+ + +++K H K K + + + S+ SS+ +SD Q ++
Sbjct: 764 KKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKY------SESRSSLDYSSDSEQSSVQ 817
Query: 146 TSHSKTRQEKRTEMEYYTHEKQEK--GTLNSNAAYEQSHFFNKNYTEDI 192
+ S +EK+ +ME TH KQEK G S + E H + E++
Sbjct: 818 ATQSAQEKEKQGQME-RTHNKQEKNRGEEKSKSERECPHSKKRTLKENL 865
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 36.2 bits (82), Expect = 0.025
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 35/164 (21%)
Query: 84 ERKQQNFDKKRKAKTNKKMDHIKKRKTE-----NAYNAIINGEANVTGSQLLSSILPTSD 138
++K + ++RKA NK IKK K + N I E G ++LPT
Sbjct: 76 QQKDEALQEERKAADNK----IKKLKLHAKAKLTSLNKYIE-EMKAQGG----TVLPTEP 126
Query: 139 VSQHNILTSHSKTRQEKRTEMEYYTHEKQEK----GTLNSNAAYEQSHFFNKNYTE-DIF 193
S+ L+ H K+ E+ E+E H+ QEK TL + Q+ ++ TE + F
Sbjct: 127 QSEEQ-LSKHDKSSTEEEMEIEKIKHKLQEKEELISTLQAQLTQAQAEQPAQSSTEMEEF 185
Query: 194 PVTPPELEETIRDEKIRRL-------------KQVLREKEAALE 224
+ +L+E ++E I L +QV+REK+A E
Sbjct: 186 VMMKQQLQE--KEEFISTLQAQLSQTQAEQAAQQVVREKDARFE 227
Score = 29.3 bits (64), Expect = 3.0
Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 35/260 (13%)
Query: 3 STSDKGAQGRNDKKDSQ--GRSNKALHLKSDAE------FKKIFGLTKDLRVCLTRIPDH 54
ST + Q + K+S+ + + H+ S E +K +TK ++ L + D
Sbjct: 830 STLIRSLQSQLQNKESEVLEGAERVRHISSKVEELSQALSQKELEITKMDQLLLEKKRDV 889
Query: 55 LTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAY 114
T + + V ++ TE MV+ E K F + KT K+ ++ R E
Sbjct: 890 ETLQQTIEEKDQQVTEISFSMTEKMVQLNEEK---FSLGVEIKTLKEQLNLLSRAEEAKK 946
Query: 115 NAIINGEANVTG-SQLLSSILPTSDVS----QHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
+ +G Q + P +S QH + Q KR + K+
Sbjct: 947 EQVEEDNEVSSGLKQNYDEMSPAGQISKEELQHEFDLLKKENEQRKRKLQAALINRKE-- 1004
Query: 170 GTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR----------------LK 213
L + E+ K+ ++ P++ E E D++ + LK
Sbjct: 1005 -LLQRVSRLEEELANLKDESKKEIPLSETERGEVEEDKENKEYSEKCVTSKCQEIEIYLK 1063
Query: 214 QVLREKEAALEEMRKKMHQK 233
Q + EKE L+ +RK + +K
Sbjct: 1064 QTISEKEVELQHIRKDLEEK 1083
Score = 27.7 bits (60), Expect = 8.8
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 35/180 (19%)
Query: 74 KETEFMVKEGERKQ---QNFDKKRKAKTNKKMDHIKKRKTEN------------AYNAII 118
KE E ++ + E + + +KK KTN+ M+ +K K EN + +++
Sbjct: 2411 KELENLLSQEEEENIVLEEENKKAVDKTNQLMETLKTIKKENIQQKAQLDSFVKSMSSLQ 2470
Query: 119 NGEANVTGS-QLLS----SILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLN 173
N + G Q L SI+ D ++K ++E R + E L+
Sbjct: 2471 NDRDRIVGDYQQLEERHLSIILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLD 2530
Query: 174 SNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
+ Y ED+ V TI+D + ++L +V ++ LE K+ +K
Sbjct: 2531 AELI---------QYREDLNQVI------TIKDSQQKQLLEVQLQQNKELENKYAKLEEK 2575
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 35.8 bits (81), Expect = 0.032
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 92 KKRKAKTNKKMDHIKKRKTENAYNAI-----------------INGEANVTGSQLLSSIL 134
K++ AK +K+ ++ K+E N + EA+ G +L S
Sbjct: 220 KEKNAKLQEKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKELQSVSA 279
Query: 135 PTSDVSQHNILTSHSKTRQEKRT--------EMEYYTHEKQEKGTLNSNAAYEQSHFFNK 186
+ N L + +QE++ E E E++EK EQ +
Sbjct: 280 KLQAQVEENELWNRLNQQQEEKMWRQEEKIQEWEEKIQEQEEKIREQEEKIREQEEKMRR 339
Query: 187 NYTEDIFPVTPPEL---EETI--RDEKIRRLKQVLREKEAALEEMRKKMHQK 233
E++ ++ EE + ++EK+RRL++++ EKE + E+ +KMH++
Sbjct: 340 Q--EEMMWEKEEKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQ 389
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRD--EKI 209
++EK E E E++EK EQ + + EE IR+ EKI
Sbjct: 521 QEEKIREQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEKIREQEEKI 580
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
R K+ +RE+E + E +K+ ++
Sbjct: 581 REQKEKIREQEEKIWEQEEKIREQ 604
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRD-EK 208
+ ++EK E E++EK EQ + + E EE +++ EK
Sbjct: 512 REQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQEEK------MGEQEEKMQEQEK 565
Query: 209 IRRLKQVLREKEAALEEMRKKMHQK 233
+RR ++ +RE+E + E ++K+ ++
Sbjct: 566 MRRQEEKIREQEEKIREQKEKIREQ 590
Score = 28.1 bits (61), Expect = 6.7
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR 211
++EK E+E HE QEK E+ + ++ E + ++EKIR
Sbjct: 375 KEEKIRELEEKMHE-QEKIREQEEKRQEEEKIREQEKRQE------QEAKMWRQEEKIRE 427
Query: 212 LKQVLREKEAALEEMRKKMHQK 233
++ +RE+E + +K+H++
Sbjct: 428 QEEKIREQEKKMWRQEEKIHEQ 449
Score = 27.7 bits (60), Expect = 8.8
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRD--E 207
+ ++EK E E E++EK EQ + E +E IR+ E
Sbjct: 533 REQEEKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEKIREQEEKIREQKEKIREQEE 592
Query: 208 KIRRLKQVLREKEAALEEMRKKMHQK 233
KI ++ +RE+E ++E +KM ++
Sbjct: 593 KIWEQEEKIREQEEMMQEQEEKMWEQ 618
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 35.4 bits (80), Expect = 0.042
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 55 LTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAY 114
L E + F + V SGT +V+E E +++ +KR + N + K+++T
Sbjct: 1040 LCERESANGFETNVASGT---CSIIVQERESREKG--QKRPSDGNSGLMAKKQKRTPKRT 1094
Query: 115 NAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSKTR-----QEKRTEM-EYYTHEKQE 168
+A E N TG S LP D S N L + + T QEK E+ +YY K E
Sbjct: 1095 SAAAKNEKNGTGQSSDSEDLPVLDNS--NELDNMNSTERISFLQEKLQEIRKYYMSLKSE 1152
Query: 169 KGTLN 173
T++
Sbjct: 1153 VATID 1157
>gi|14670375 SCG10-like-protein [Homo sapiens]
Length = 180
Score = 34.7 bits (78), Expect = 0.072
Identities = 30/137 (21%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 101 KMDHIKKRKTENAYNAIINGEANVTG-SQLLSSILPTSDVSQHNI---LTSHSKTRQEKR 156
++ + KR + ++ I+ ++++ S +LSS D S + L + + R+ +
Sbjct: 41 EVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQE 100
Query: 157 TEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVL 216
++ E++E + A E+++ F++ E + EL + IR+ + L++ L
Sbjct: 101 AQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLN--YKMELSKEIREAHLAALRERL 158
Query: 217 REKEAALEEMRKKMHQK 233
REKE E+R+ Q+
Sbjct: 159 REKELHAAEVRRNKEQR 175
>gi|21361891 SH2 domain containing 4A [Homo sapiens]
Length = 454
Score = 33.9 bits (76), Expect = 0.12
Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 23/163 (14%)
Query: 84 ERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHN 143
ERK+ K R K N K H K + + ++ GE ++ DV +
Sbjct: 47 ERKESLPVKPRPKKENGKSVHWKLGADKEVWVWVM-GEHHLDKPY---------DVLCNE 96
Query: 144 ILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFP--VTPPELE 201
I+ ++ + E+ E TH ++ +L + + Y + T+DI+ ELE
Sbjct: 97 IIAERARLKAEQEAEEPRKTHSEEFTNSLKTKSQYHDLQAPDNQQTKDIWKKVAEKEELE 156
Query: 202 E------TIRDEKIRRLKQVLREKEAALEEMRKKM-----HQK 233
+ T+ +EKIR L R + L + +M HQK
Sbjct: 157 QGSRPAPTLEEEKIRSLSSSSRNIQQMLADSINRMKAYAFHQK 199
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETI--RDE 207
+ ++EK E EK+EK +E+ + EE + ++E
Sbjct: 331 REQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQ-------------EEMMWEKEE 377
Query: 208 KIRRLKQVLREKEAALEEMRKKMHQK 233
K+RR ++++ EKE + E+ +KMH++
Sbjct: 378 KMRRQEEMMWEKEEKIRELEEKMHEQ 403
Score = 32.3 bits (72), Expect = 0.36
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDE-- 207
+ ++EK E E T E++EK EQ + T EE IR++
Sbjct: 629 REQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEE------TMWRQEEKIREQEK 682
Query: 208 KIRRLKQVLREKEAALEEMRKKMHQK 233
KIR ++ +RE+E ++E +KM ++
Sbjct: 683 KIREQEEKIREQEEMMQEQEEKMWEQ 708
Score = 28.1 bits (61), Expect = 6.7
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR 211
++EK E+E HE QEK E+ + ++ E + ++EKIR
Sbjct: 389 KEEKIRELEEKMHE-QEKIREQEEKRQEEEKIREQEKRQE------QEAKMWRQEEKIRE 441
Query: 212 LKQVLREKEAALEEMRKKMHQK 233
++ +RE+E + +K+H++
Sbjct: 442 QEEKIREQEKKMWRQEEKIHEQ 463
Score = 27.7 bits (60), Expect = 8.8
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 27/153 (17%)
Query: 80 VKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDV 139
++E E K+Q +K R+ + ++ + R+ E I E + +
Sbjct: 406 IREQEEKRQEEEKIREQEKRQEQEAKMWRQEEK----IREQEEKIREQEKKMWRQEEKIH 461
Query: 140 SQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPE 199
Q I + QE+ E HE++E E+ H E
Sbjct: 462 EQEKIREEEKRQEQEEMWRQEEKIHEQEEIWRQK-----EKMH----------------E 500
Query: 200 LEETIR--DEKIRRLKQVLREKEAALEEMRKKM 230
EE IR +EK+ R ++ +RE+E + E +KM
Sbjct: 501 QEEKIRKQEEKVWRQEEKIREQEEKIREQEEKM 533
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 33.5 bits (75), Expect = 0.16
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 32/172 (18%)
Query: 92 KKRKAKTNKKMDHIKKRKTENAYNAI-----------------INGEANVTGSQLLSSIL 134
K++ AK +K+ ++ K+E N + EA+ G +L S
Sbjct: 281 KEKNAKLQEKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKELQSVSA 340
Query: 135 PTSDVSQHNILTSHSKTRQEKRT--------EMEYYTHEKQEKGTLNSNAAYEQSHFFNK 186
+ N L + +QE++ E E E++EK EQ +
Sbjct: 341 KLQAQVEENELWNRLNQQQEEKMWRQEEKIQEWEEKIQEQEEKIREQEEKIREQEEKMRR 400
Query: 187 NYTEDIFPVTPPEL---EETI--RDEKIRRLKQVLREKEAALEEMRKKMHQK 233
E++ ++ EE + ++EK+RR ++++ EKE + E+ +KMH++
Sbjct: 401 Q--EEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQ 450
Score = 31.6 bits (70), Expect = 0.61
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDE-- 207
+ ++EK E E T E++EK EQ + + EE IR++
Sbjct: 595 REQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEEK------MRRQEEKIREQEK 648
Query: 208 KIRRLKQVLREKEAALEEMRKKMHQK 233
KIR ++ +RE+E ++E +KM ++
Sbjct: 649 KIREQEEKIREQEEMMQEQEEKMWEQ 674
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR 211
++EK E E E++EK EQ + E+ +++E ++EK+RR
Sbjct: 583 QEEKIREQEEKIREQEEKIREQEEMTQEQEEKMGEQ--EEKMCEQEEKMQE--QEEKMRR 638
Query: 212 LKQVLREKEAALEEMRKKMHQK 233
++ +RE+E + E +K+ ++
Sbjct: 639 QEEKIREQEKKIREQEEKIREQ 660
Score = 28.1 bits (61), Expect = 6.7
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRR 211
++EK E+E HE QEK E+ + ++ E + ++EKIR
Sbjct: 436 KEEKIRELEEKMHE-QEKIREQEEKRQEEEKIREQEKRQE------QEAKMWRQEEKIRE 488
Query: 212 LKQVLREKEAALEEMRKKMHQK 233
++ +RE+E + +K+H++
Sbjct: 489 QEEKIREQEEKMWRQEEKIHEQ 510
Score = 27.7 bits (60), Expect = 8.8
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIR-DEKIR 210
++EK E E E++EK +EQ + + E EE R +EKIR
Sbjct: 482 QEEKIREQEEKIREQEEKMWRQEEKIHEQEKIREEEKRQ--------EQEEMWRQEEKIR 533
Query: 211 RLKQVLREKEAALEEMRKKMHQK 233
+++ R+KE E+ K Q+
Sbjct: 534 EQEEIWRQKEKIHEQEEKIRKQE 556
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 54 HLTSGEGFDSFSSLVKSGTYKETEFMVKEGER-KQQNFDKKRKAKTNKKMDHIKKRKTEN 112
HL + L SGT KE+ +V EG+R +Q+N K + N K+ +
Sbjct: 35 HLLARSNVSVQDELNASGTIKESGVLVHEGDRGRQENTQDGHKGEGNGSKWAEVGGKSFS 94
Query: 113 AYNAIINGEANVTG 126
Y+ + N E N+ G
Sbjct: 95 TYSTLANEEGNIEG 108
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 33.1 bits (74), Expect = 0.21
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 152 RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPEL----EETIRD- 206
RQEK E E E++EK ++Q K E E EE +R+
Sbjct: 535 RQEKMREQEDQMWEQEEKMRDQEQKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMRER 594
Query: 207 -EKIRRLKQVLREKEAALEEMRKKMHQK 233
+K+R ++++RE+E ++E +KM ++
Sbjct: 595 EKKMREEEEMMREQEEKMQEQEEKMQEQ 622
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 74 KETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAY-----NAIINGEANVTGSQ 128
+E E M++E E K Q ++K + + K + +K + + + E + Q
Sbjct: 599 REEEEMMREQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEEKMWEQEEKMWEQQ 658
Query: 129 LLSSILPTSDVSQHNILTSHSKTR-QEKRTEME--YYTHEKQEKGTLNSNAAYEQSHFFN 185
L Q L H K + QEK E E + EK EK T E+ +
Sbjct: 659 RLPE--------QKEKLWEHEKMQEQEKMQEQEEKIWEQEKMEKKTQEQ----EKKTWDQ 706
Query: 186 KNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
+ E+ + E R++K+R ++++RE+E ++E +KM ++
Sbjct: 707 EKMREE------ESMRE--REKKMREEEEMMREQEEKMQEQEEKMQEQ 746
Score = 28.1 bits (61), Expect = 6.7
Identities = 16/84 (19%), Positives = 39/84 (46%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKI 209
+ ++E+ E + EK+E+ + + ++ T + E+ +E+I
Sbjct: 393 RDQEERMWEQDERLREKEERMREQEKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERI 452
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
R ++ +RE+E + E +KM ++
Sbjct: 453 REREKKMREEEETMREQEEKMQKQ 476
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.21
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKI 209
+ + EK E E ++EK E+ K E + E E ++EKI
Sbjct: 377 REQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKI 436
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
R L+++++++E L E+ +KM ++
Sbjct: 437 RELEEMMQDQEEKLREVEEKMQEE 460
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPEL 200
Q + + RQEK E E+ EK + Q EL
Sbjct: 393 QEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-------------EL 439
Query: 201 EETIRD--EKIRRLKQVLREKEAALEEMRKKMHQK 233
EE ++D EK+R +++ ++E+E ++E +K+ ++
Sbjct: 440 EEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQ 474
Score = 28.9 bits (63), Expect = 3.9
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 107 KRKTENAYNAI----INGEANVTGSQLLS-SILPTSDVSQHNILTSHSKTRQEKRTEMEY 161
KRK E A + + EA+ G +L S S + V ++ + ++ ++EK E
Sbjct: 245 KRKLERAQLLLPQQQLQVEADRLGKELQSVSAKLQAQVEENELWNLLNQQQEEKMWRQEE 304
Query: 162 YTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDE--KIRRLKQVLREK 219
E++EK EQ K + ++ E EE IR++ K+ R ++ +RE+
Sbjct: 305 KIQEQEEKMCEQELKIREQEE---KMWRQE---EKMHEQEEKIREQEDKMWRQEEKIREQ 358
Query: 220 EAALEEMRKKM 230
E + E +KM
Sbjct: 359 EEKIREQEEKM 369
Score = 28.1 bits (61), Expect = 6.7
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 141 QHNILTSHSKT-RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPE 199
+ I KT RQEK + E E++EK +EQ +
Sbjct: 475 EEKIQEQEEKTWRQEKLLKQEEKIWEQEEKMWRQEEKMWEQEE----------------K 518
Query: 200 LEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
++E ++EK++R ++ +RE+E L + +KM ++
Sbjct: 519 MQE--QEEKMQRQEEKMREQEVRLWQQEEKMQEQ 550
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.21
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 150 KTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKI 209
+ + EK E E ++EK E+ K E + E E ++EKI
Sbjct: 377 REQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKI 436
Query: 210 RRLKQVLREKEAALEEMRKKMHQK 233
R L+++++++E L E+ +KM ++
Sbjct: 437 RELEEMMQDQEEKLREVEEKMQEE 460
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPEL 200
Q + + RQEK E E+ EK + Q EL
Sbjct: 393 QEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-------------EL 439
Query: 201 EETIRD--EKIRRLKQVLREKEAALEEMRKKMHQK 233
EE ++D EK+R +++ ++E+E ++E +K+ ++
Sbjct: 440 EEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQ 474
Score = 30.0 bits (66), Expect = 1.8
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 64 FSSLVKSGTY-----KETEFM--------VKEGERKQQNFDKKRKAKT--NKKMD---HI 105
F V+ GTY KE + + + + E K++N + + K + ++K + ++
Sbjct: 182 FDHAVRMGTYIEKLTKERDALSLELYRNTITDEELKEKNAELQEKLRLVESEKSEIQLNV 241
Query: 106 K--KRKTENAYNAI----INGEANVTGSQLLS-SILPTSDVSQHNILTSHSKTRQEKRTE 158
K KRK E A + + EA+ G +L S S + V ++ + ++ ++EK
Sbjct: 242 KDLKRKLERAQLLLPQQQLQVEADRLGKELQSVSAKLQAQVEENELWNLLNQQQEEKMWR 301
Query: 159 MEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDE--KIRRLKQVL 216
E E++EK EQ K + ++ E EE IR++ K+ R ++ +
Sbjct: 302 QEEKIQEQEEKMCEQELKIREQEE---KMWRQE---EKMHEQEEKIREQEDKMWRQEEKI 355
Query: 217 REKEAALEEMRKKM 230
RE+E + E +KM
Sbjct: 356 REQEEKIREQEEKM 369
Score = 28.1 bits (61), Expect = 6.7
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 141 QHNILTSHSKT-RQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPE 199
+ I KT RQEK + E E++EK +EQ +
Sbjct: 475 EEKIQEQEEKTWRQEKLLKQEEKIWEQEEKMWRQEEKMWEQEE----------------K 518
Query: 200 LEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 233
++E ++EK++R ++ +RE+E L + +KM ++
Sbjct: 519 MQE--QEEKMQRQEEKMREQEVRLWQQEEKMQEQ 550
>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
Length = 331
Score = 33.1 bits (74), Expect = 0.21
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 83 GERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEAN--VTGSQLLSSILPTSDVS 140
GE++++ FD A + +++ N + + + + + + G + ++ L T S
Sbjct: 3 GEQEEERFDGMLLAMAQQHEGGVQE--LVNTFFSFLRRKTDFFIGGEEGMAEKLITQTFS 60
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPEL 200
HN L KTR+EKR E EK E+ + A ++ + P++
Sbjct: 61 HHNQLAQ--KTRREKRARQEAERREKAERAARLAKEAKSET--------------SGPQI 104
Query: 201 EETIRDEKIRRLKQVLREKEAA 222
+E + DE+ RL+ + +K+ A
Sbjct: 105 KE-LTDEEAERLQLEIDQKKDA 125
>gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]
Length = 5795
Score = 32.7 bits (73), Expect = 0.27
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 146 TSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIR 205
+ H+KT +EK TE E + T + ED +T + I
Sbjct: 595 SKHTKTGREKATEDTEQGREGEATATADRREQRRTEEGLKDK--EDSDSMTNTTKIQLIH 652
Query: 206 DEKIRRLKQVLREKEAALEEMRKKM 230
DEK + +Q+L EKE A ++ + KM
Sbjct: 653 DEKRLKKEQILTEKEVATKDSKFKM 677
>gi|44890052 stathmin 1 isoform a [Homo sapiens]
Length = 149
Score = 32.3 bits (72), Expect = 0.36
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 96 AKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNI---LTSHSKTR 152
A ++ ++ ++KR + A+ I++ + + + S D+S I L + + R
Sbjct: 2 ASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERR 61
Query: 153 QEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRL 212
+ E+ EK+E A E+++ F+K E + E + R+ ++
Sbjct: 62 KSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKL--THKMEANKENREAQMAAK 119
Query: 213 KQVLREKEAALEEMRKKMHQK 233
+ LREK+ +EE+RK K
Sbjct: 120 LERLREKDKHIEEVRKNKESK 140
>gi|44890050 stathmin 1 isoform a [Homo sapiens]
Length = 149
Score = 32.3 bits (72), Expect = 0.36
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 96 AKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNI---LTSHSKTR 152
A ++ ++ ++KR + A+ I++ + + + S D+S I L + + R
Sbjct: 2 ASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERR 61
Query: 153 QEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRL 212
+ E+ EK+E A E+++ F+K E + E + R+ ++
Sbjct: 62 KSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKL--THKMEANKENREAQMAAK 119
Query: 213 KQVLREKEAALEEMRKKMHQK 233
+ LREK+ +EE+RK K
Sbjct: 120 LERLREKDKHIEEVRKNKESK 140
>gi|5031851 stathmin 1 isoform a [Homo sapiens]
Length = 149
Score = 32.3 bits (72), Expect = 0.36
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 96 AKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNI---LTSHSKTR 152
A ++ ++ ++KR + A+ I++ + + + S D+S I L + + R
Sbjct: 2 ASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERR 61
Query: 153 QEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRL 212
+ E+ EK+E A E+++ F+K E + E + R+ ++
Sbjct: 62 KSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKL--THKMEANKENREAQMAAK 119
Query: 213 KQVLREKEAALEEMRKKMHQK 233
+ LREK+ +EE+RK K
Sbjct: 120 LERLREKDKHIEEVRKNKESK 140
>gi|133778961 testis expressed 15 [Homo sapiens]
Length = 2789
Score = 32.3 bits (72), Expect = 0.36
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 59 EGFDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAII 118
+G S + +VK T + VK+ E+ + + K+ + + K +K + + + +
Sbjct: 1443 KGSSSETCIVKKDTEDRITWKVKQAEKAKDSVYKRSMTEGSTVNTEYKNQKNQISEESCL 1502
Query: 119 NGEANVTGSQLLSSILPTSDVSQHNI----LTSHSKTRQEKRTEMEYYTHEKQEKGTLNS 174
N + + L+ S L T + + ++ S+ ++EK+ E++ + + Q TL+S
Sbjct: 1503 N--EKIITTNLIDSHLSTKNTTTESVPLKNTVSNPLNKREKKGEIK-VSKDSQSDLTLHS 1559
Query: 175 NAAY 178
AY
Sbjct: 1560 EIAY 1563
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 32.0 bits (71), Expect = 0.47
Identities = 43/170 (25%), Positives = 60/170 (35%), Gaps = 23/170 (13%)
Query: 20 GRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFM 79
GR+ LK E + ++ + DL + L+RIP+HL G S + S + +
Sbjct: 774 GRNELLSPLKDSDEIRSLW-VKIDLTL-LSRIPEHLPQEPGVLSAPATKDSESAPPSHTS 831
Query: 80 VKEGERKQQNFDKKRKAKTNKKMDHIKKRKTE-----------------NAYNAIINGEA 122
E+ +KRK IKK + E N N IN A
Sbjct: 832 DTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSANHCNMNINSVA 891
Query: 123 ---NVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
N L S I P SD S+H TS T + +T K
Sbjct: 892 IPINKNEKMLRSPISPLSDASKHK-YTSEDLTSSSRPNGNSLFTSASSSK 940
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 32.0 bits (71), Expect = 0.47
Identities = 43/170 (25%), Positives = 60/170 (35%), Gaps = 23/170 (13%)
Query: 20 GRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFM 79
GR+ LK E + ++ + DL + L+RIP+HL G S + S + +
Sbjct: 749 GRNELLSPLKDSDEIRSLW-VKIDLTL-LSRIPEHLPQEPGVLSAPATKDSESAPPSHTS 806
Query: 80 VKEGERKQQNFDKKRKAKTNKKMDHIKKRKTE-----------------NAYNAIINGEA 122
E+ +KRK IKK + E N N IN A
Sbjct: 807 DTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSANHCNMNINSVA 866
Query: 123 ---NVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
N L S I P SD S+H TS T + +T K
Sbjct: 867 IPINKNEKMLRSPISPLSDASKHK-YTSEDLTSSSRPNGNSLFTSASSSK 915
>gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [Homo
sapiens]
Length = 671
Score = 31.6 bits (70), Expect = 0.61
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 199 ELEET------IRDEKIRRLKQVLREKEAALEEMRKKMHQ 232
ELEE +++E+I+ L++ L EKE ++E+++K+H+
Sbjct: 3 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 42
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 31.6 bits (70), Expect = 0.61
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 EGERKQQNFDKKRKAKTNKKM-DHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVS 140
EGER Q KT +++ +HIK +TE A N +L + +++
Sbjct: 330 EGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKVMTELY 389
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
Q N + H K E E Y EK+EK
Sbjct: 390 QENEMKLHRKLTVE-----ENYRLEKEEK 413
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 31.6 bits (70), Expect = 0.61
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 EGERKQQNFDKKRKAKTNKKM-DHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVS 140
EGER Q KT +++ +HIK +TE A N +L + +++
Sbjct: 330 EGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKVMTELY 389
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
Q N + H K E E Y EK+EK
Sbjct: 390 QENEMKLHRKLTVE-----ENYRLEKEEK 413
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 31.6 bits (70), Expect = 0.61
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 EGERKQQNFDKKRKAKTNKKM-DHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVS 140
EGER Q KT +++ +HIK +TE A N +L + +++
Sbjct: 301 EGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKVMTELY 360
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
Q N + H K E E Y EK+EK
Sbjct: 361 QENEMKLHRKLTVE-----ENYRLEKEEK 384
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 31.6 bits (70), Expect = 0.61
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 EGERKQQNFDKKRKAKTNKKM-DHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVS 140
EGER Q KT +++ +HIK +TE A N +L + +++
Sbjct: 318 EGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKVMTELY 377
Query: 141 QHNILTSHSKTRQEKRTEMEYYTHEKQEK 169
Q N + H K E E Y EK+EK
Sbjct: 378 QENEMKLHRKLTVE-----ENYRLEKEEK 401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,366,524
Number of Sequences: 37866
Number of extensions: 357124
Number of successful extensions: 2222
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 310
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.