Guide to the Human Genome
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Name: STMN1 Sequence: fasta or formatted (149aa) NCBI GI: 44890052
Description:

stathmin 1 isoform a

Referenced in:

Cytoskeleton
Neurons

Other entries for this name:
alt prot [174aa] stathmin 1 isoform b
alt mRNA [149aa] stathmin 1 isoform a
alt mRNA [149aa] stathmin 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         15           2
 C cysteine            0.0          0           0
 D aspartate           4.0          6           1
 E glutamate          20.1         30           2
 F phenylalanine       2.0          3           1
 G glycine             0.7          1           1
 H histidine           2.7          4           1
 I isoleucine          3.4          5           1
 K lysine             15.4         23           3
 L leucine             8.7         13           1
 M methionine          2.7          4           1
 N asparagine          4.0          6           3
 P proline             4.0          6           2
 Q glutamine           4.0          6           1
 R arginine            6.0          9           2
 S serine              7.4         11           2
 T threonine           1.3          2           1
 V valine              3.4          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stathmin 1 isoform a 
STMN1                 1.000   stathmin 1 isoform a 
STMN1                 1.000   stathmin 1 isoform a 
STMN1                 0.821   stathmin 1 isoform b 
STMN4                 0.646   stathmin-like 4 
STMN2                 0.627   superiorcervical ganglia, neural specific 10 
STMN3                 0.586   SCG10-like-protein 
LOC100133599          0.091   PREDICTED: hypothetical protein 
INCENP                0.091   inner centromere protein antigens 135/155kDa isofor...
DEF6                  0.080   differentially expressed in FDCP 6 homolog 
INCENP                0.080   inner centromere protein antigens 135/155kDa isofor...
SAFB2                 0.076   scaffold attachment factor B2 
DDX23                 0.076   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
CLIP1                 0.076   restin isoform b 
CLIP1                 0.076   restin isoform a 
MYO10                 0.076   myosin X 
BAT2D1                0.076   HBxAg transactivated protein 2 
CALD1                 0.072   caldesmon 1 isoform 1 
CHAF1A                0.072   chromatin assembly factor 1, subunit A (p150) 
LOC283767             0.072   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.072   PREDICTED: golgi autoantigen, golgin subfamily a-li...
UBXN4                 0.068   UBX domain containing 2 
TCHH                  0.068   trichohyalin 
WDR87                 0.065   NYD-SP11 protein 
LOC100133599          0.065   PREDICTED: hypothetical protein 
RDX                   0.065   radixin 
EEA1                  0.065   early endosome antigen 1, 162kD 
SFRS12                0.065   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.065   splicing factor, arginine/serine-rich 12 isoform b [...
LOC727832             0.065   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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