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Search of human proteins with 55742705
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55742705 hypothetical protein LOC57464 isoform a [Homo
sapiens]
(834 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55742705 hypothetical protein LOC57464 isoform a [Homo sapiens] 1680 0.0
gi|197245444 hypothetical protein LOC57464 isoform b [Homo sapiens] 1503 0.0
gi|56790935 hypothetical protein LOC85369 [Homo sapiens] 1149 0.0
gi|110349719 titin isoform N2-A [Homo sapiens] 37 0.058
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 35 0.29
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 35 0.29
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 35 0.29
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 35 0.38
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 33 0.84
gi|49472830 hypothetical protein LOC116224 [Homo sapiens] 33 0.84
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 33 1.1
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 33 1.1
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 33 1.1
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 33 1.4
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 33 1.4
gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens] 33 1.4
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 33 1.4
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 32 1.9
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 32 1.9
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 32 2.4
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 32 2.4
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 32 2.4
gi|4557719 DNA ligase I [Homo sapiens] 32 2.4
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 32 2.4
gi|15721939 metastatic lymph node 51 [Homo sapiens] 32 2.4
gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens] 32 2.4
gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens] 32 2.4
gi|124244056 family with sequence similarity 123B [Homo sapiens] 32 3.2
gi|5031759 homeobox A11 [Homo sapiens] 32 3.2
gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo ... 32 3.2
>gi|55742705 hypothetical protein LOC57464 isoform a [Homo sapiens]
Length = 834
Score = 1681 bits (4352), Expect = 0.0
Identities = 834/834 (100%), Positives = 834/834 (100%)
Query: 1 MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG 60
MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG
Sbjct: 1 MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG 60
Query: 61 HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS 120
HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS
Sbjct: 61 HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS 120
Query: 121 RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ 180
RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ
Sbjct: 121 RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ 180
Query: 181 ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH 240
ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH
Sbjct: 181 ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH 240
Query: 241 NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL 300
NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL
Sbjct: 241 NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL 300
Query: 301 PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE 360
PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE
Sbjct: 301 PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE 360
Query: 361 RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW 420
RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW
Sbjct: 361 RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW 420
Query: 421 APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK 480
APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK
Sbjct: 421 APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK 480
Query: 481 NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI 540
NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI
Sbjct: 481 NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI 540
Query: 541 LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL 600
LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL
Sbjct: 541 LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL 600
Query: 601 VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN 660
VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN
Sbjct: 601 VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN 660
Query: 661 LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL 720
LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL
Sbjct: 661 LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL 720
Query: 721 GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYD 780
GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYD
Sbjct: 721 GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYD 780
Query: 781 RPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH 834
RPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH
Sbjct: 781 RPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH 834
>gi|197245444 hypothetical protein LOC57464 isoform b [Homo sapiens]
Length = 758
Score = 1503 bits (3892), Expect = 0.0
Identities = 751/751 (100%), Positives = 751/751 (100%)
Query: 1 MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG 60
MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG
Sbjct: 1 MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADG 60
Query: 61 HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS 120
HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS
Sbjct: 61 HAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVS 120
Query: 121 RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ 180
RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ
Sbjct: 121 RERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQ 180
Query: 181 ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH 240
ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH
Sbjct: 181 ACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMH 240
Query: 241 NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL 300
NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL
Sbjct: 241 NEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGL 300
Query: 301 PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE 360
PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE
Sbjct: 301 PPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNE 360
Query: 361 RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW 420
RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW
Sbjct: 361 RDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPW 420
Query: 421 APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK 480
APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK
Sbjct: 421 APKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIK 480
Query: 481 NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI 540
NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI
Sbjct: 481 NEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINI 540
Query: 541 LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL 600
LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL
Sbjct: 541 LADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHL 600
Query: 601 VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN 660
VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN
Sbjct: 601 VFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRN 660
Query: 661 LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL 720
LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL
Sbjct: 661 LFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYL 720
Query: 721 GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGN 751
GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGN
Sbjct: 721 GRQWRKSNMKTMSAIYQKVRHRMNDDWAYGN 751
>gi|56790935 hypothetical protein LOC85369 [Homo sapiens]
Length = 837
Score = 1149 bits (2973), Expect = 0.0
Identities = 581/829 (70%), Positives = 677/829 (81%), Gaps = 21/829 (2%)
Query: 5 AAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADGHAAE 64
A P G P A GGK RE R+QR++SEG + P LEFEY D D AAE
Sbjct: 29 AQPPPGAPRAAAGLLPGGKA-------REFNRNQRKDSEGYSESPDLEFEYADTDKWAAE 81
Query: 65 LSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVSRERR 124
LSELYSYTE EF NR+CFEEDF+ V K+W EL+ + + + M LLD LEV +RE+R
Sbjct: 82 LSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREKR 141
Query: 125 LKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQACSS 184
LKVARA+LY+AQGTFGEC SE +V W RYN FLL ++GTF+ +ELL+MEIDNS ACSS
Sbjct: 142 LKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSS 201
Query: 185 ALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMHNEEP 244
A+RKPA+S+ADST+LRVLL++MYL+VE + E E D WRT R+TFR EL ++N EP
Sbjct: 202 AVRKPAISLADSTDLRVLLNIMYLIVETVHQECEGDKAEWRTMRQTFRAELGSPLYNNEP 261
Query: 245 FALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGLPPLA 304
FA++LF MVTKFCSG APHFP+KKVLLLLWK V+ TLGGFE LQ++K +KR+ LGLPPL
Sbjct: 262 FAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRSILGLPPLP 321
Query: 305 EDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLF 364
EDSI+V+++MRAASPP+ DL E Q + RGRR + L KQD+LD +NERD +
Sbjct: 322 EDSIKVIRNMRAASPPASASDLIEQQ------QKRGRR--EHKALIKQDNLDAFNERDPY 373
Query: 365 KTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKV 424
K ++ EEEE D + +L+GE LE+D ++PPP Q P +R+ PKGLPWAPKV
Sbjct: 374 KADDSREEEEEN---DDDNSLEGETFPLERDEVMPPP-LQHP-QTDRLTCPKGLPWAPKV 428
Query: 425 RQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIKNEEE 484
R+KDIE FLE SR+KFIG+TLG DT+T+VGLPRPIHES+KTLKQHKY SIA+VQ + EEE
Sbjct: 429 REKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEE 488
Query: 485 LEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADV 544
+ P+S GEE V + P E LYQG+L SLPQYMIALLKILLAAAPTSKAKTDSINILADV
Sbjct: 489 YLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADV 548
Query: 545 LPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHLVFAN 604
LPEEMP TVLQSMKLG+DVNRHKE+IVK+IS +LLLLLKHFKLNH+YQFEY++QHLVFAN
Sbjct: 549 LPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLLLKHFKLNHVYQFEYMAQHLVFAN 608
Query: 605 CIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSC 664
CIPLILKFFNQNI+SYITAKNSISVLDYP C + +LPELT ESLEAGD++QFCWRNLFSC
Sbjct: 609 CIPLILKFFNQNIMSYITAKNSISVLDYPHCVVHELPELTAESLEAGDSNQFCWRNLFSC 668
Query: 665 INLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYLGRQW 724
INLLR+LNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAM+QLYVLKLLK+QTKYLGRQW
Sbjct: 669 INLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQW 728
Query: 725 RKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDRPQD 784
RKSNMKTMSAIYQKVRHR+NDDWAYGND+DARPWDFQAEEC LRANIE FN+RRYDR
Sbjct: 729 RKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRAHS 788
Query: 785 S-EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQ 832
+ +F PVDNCLQSVLGQR+DLPEDF +Y+LWLEREVFS+PI WEELLQ
Sbjct: 789 NPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ 837
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 37.4 bits (85), Expect = 0.058
Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 46/292 (15%)
Query: 294 KRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQL--------------APPPSKLR 339
K E+ P+ E + V + +PP+ ++ + + APPP +
Sbjct: 10031 KVPEVPKKPVPEKKVPVPAPKKVEAPPAKVPEVPKKLIPEEKKPTPVPKKVEAPPPKVPK 10090
Query: 340 GRRGSRRQLLTKQDSL-----DIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQ 394
R + Q+ +I E ++ EE EEEE + E L E ++ +
Sbjct: 10091 KREPVPVPVALPQEEEVLFEEEIVPEEEVLPEEEEVLPEEEEVLPEEEEVLPEEEEIPPE 10150
Query: 395 DPLVPPPPSQAPLSAERVAFPKGLPW----------APKVRQKDIEHFLEMSRNKFIGFT 444
+ VPP P E V + LP P++++K E + + + +
Sbjct: 10151 EEEVPPEEEYVPEEEEFVPEEEVLPEVKPKVPVPAPVPEIKKKVTEKKVVIPKKE----- 10205
Query: 445 LGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEI 504
+ +P+ + E L + + + +V + EEE + EE +PE P I
Sbjct: 10206 -EAPPAKVPEVPKKVEEKRIILPKEEEVLPVEVTEEPEEE------PISEEEIPEEPPSI 10258
Query: 505 LYQGMLYSLPQYMIALLKILLAAAPT---SKAKTDSINILADVLPEEMPITV 553
+ + P + ++K + APT K + + + E++P+ V
Sbjct: 10259 --EEVEEVAPPRVPEVIKKAVPEAPTPVPKKVEAPPAKVSKKIPEEKVPVPV 10308
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 35.0 bits (79), Expect = 0.29
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 372 EEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAE----------RVAFPKGLPWA 421
EEEEE G+ + T G +D + P PP + P S +A P P
Sbjct: 527 EEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRSGPPLPNGLKPEFALALPPEPPPG 586
Query: 422 PKVR--QKDIEHFLEMSRNK 439
P+V+ +EH L S+N+
Sbjct: 587 PEVKGGSCGLEHELSCSKNE 606
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 35.0 bits (79), Expect = 0.29
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 372 EEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAE----------RVAFPKGLPWA 421
EEEEE G+ + T G +D + P PP + P S +A P P
Sbjct: 527 EEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRSGPPLPNGLKPEFALALPPEPPPG 586
Query: 422 PKVR--QKDIEHFLEMSRNK 439
P+V+ +EH L S+N+
Sbjct: 587 PEVKGGSCGLEHELSCSKNE 606
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 35.0 bits (79), Expect = 0.29
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 372 EEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAE----------RVAFPKGLPWA 421
EEEEE G+ + T G +D + P PP + P S +A P P
Sbjct: 527 EEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRSGPPLPNGLKPEFALALPPEPPPG 586
Query: 422 PKVR--QKDIEHFLEMSRNK 439
P+V+ +EH L S+N+
Sbjct: 587 PEVKGGSCGLEHELSCSKNE 606
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 34.7 bits (78), Expect = 0.38
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 14 ANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADGHAAELSELYSYTE 73
A G+G+ GG G + ++++ Q +++ S + + + G+ + + +
Sbjct: 6 AGGDGHRGGDGAVRSETAPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDD 65
Query: 74 NLEFTNNRRCFEEDFKTQVQGKE--WLELEEDAQKAYIMGLLDRLEVVSRERRLKVAR 129
RR E+ + Q+ +E WLE EE A++ Y L +R + + +R+ + R
Sbjct: 66 RQRLARERR---EEREKQLAAREIVWLEREERARQHYEKHLEERKKRLEEQRQKEERR 120
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 33.5 bits (75), Expect = 0.84
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 284 FEHLQTLKVQKRAELGLPPLA------EDSIQVVKSMRAASP-PSYTLDLGESQLAPPPS 336
F+ LQ + K E PP A SIQ ++ + + P + L L +
Sbjct: 488 FQDLQVEALHKGWETDGPPAALSIMAQSTSIQRIQRLIDSVPLMNLLLTLLSTSYRKACV 547
Query: 337 KLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDG---ERTLDGELDLLE 393
R R+GS + + Y E D TEE ++++++ G E T+ +
Sbjct: 548 LQRQRKGSMSSDASASTDSNTYYEDDFSSTEEDSSQDDDSEPILGQWFEETISPSKEKAA 607
Query: 394 QDPLVPPPPSQAPLSAERVAFPKGLPWAPK----VRQKDIEHFLEMSRN 438
P PPPP + S+ RV P K +KD E FL ++ N
Sbjct: 608 PPPPPPPPPLE---SSPRVKSPSKQAPGEKGNILASRKDPELFLGLASN 653
>gi|49472830 hypothetical protein LOC116224 [Homo sapiens]
Length = 287
Score = 33.5 bits (75), Expect = 0.84
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 7 PGTGGPPANGNGNGGGKG 24
PGTGG PA G G+GGG G
Sbjct: 14 PGTGGSPAEGGGSGGGGG 31
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 33.1 bits (74), Expect = 1.1
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 304 AEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRR--GSRRQLLTKQDSLDIYNER 361
+E+++Q VK A PS + + + APPP R G + L + DS E
Sbjct: 508 SEEALQKVKYFVAKEDPS-SQEEAHTPEAPPPQPPSSERCLGEMKCTLVRGDSSPRQAEL 566
Query: 362 DLFKTEEPATEEE----------EESAGDGERTLDGELDLLEQDPLVPPP-PSQAPLSAE 410
PA E+ EE+ + ERT + E EQ PL P + S E
Sbjct: 567 KSGPASRPALEKPHPHEEATTLPEEAPSNDERTPEEEAPPNEQRPLREEVLPKEGVASKE 626
Query: 411 RVAFPKGLPWAPKVRQKD 428
V + LP +V K+
Sbjct: 627 EVTLKEELPPKEEVAPKE 644
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 33.1 bits (74), Expect = 1.1
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 304 AEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRR--GSRRQLLTKQDSLDIYNER 361
+E+++Q VK A PS + + + APPP R G + L + DS E
Sbjct: 397 SEEALQKVKYFVAKEDPS-SQEEAHTPEAPPPQPPSSERCLGEMKCTLVRGDSSPRQAEL 455
Query: 362 DLFKTEEPATEEE----------EESAGDGERTLDGELDLLEQDPLVPPP-PSQAPLSAE 410
PA E+ EE+ + ERT + E EQ PL P + S E
Sbjct: 456 KSGPASRPALEKPHPHEEATTLPEEAPSNDERTPEEEAPPNEQRPLREEVLPKEGVASKE 515
Query: 411 RVAFPKGLPWAPKVRQKD 428
V + LP +V K+
Sbjct: 516 EVTLKEELPPKEEVAPKE 533
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 33.1 bits (74), Expect = 1.1
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 312 KSMRAASPPSYTLDLGE--SQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEP 369
++ R P + ++G+ S+ P+K R+G +L KQ +++ E+
Sbjct: 978 RNKRGQMPENPYSEVGKIASKAVYVPAKPARRKG----MLVKQSNVEDSPEKTCSIPIPT 1033
Query: 370 ATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQ-APLSAERVAFPKGLPWAPKVRQKD 428
+E ++ G+ + +++ DP P PPSQ P + V+ P A VR D
Sbjct: 1034 IIVKEPSTSSSGKSSQGSSMEI---DPQAPEPPSQLRPDESLTVSSPFAAAIAGAVR--D 1088
Query: 429 IEHFLEMSRNK--FIGFTLGQDTDTLVGLPRP 458
E LE RN F+ LG D D +G P P
Sbjct: 1089 REKRLEARRNSPAFLSTDLG-DEDVGLGPPAP 1119
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 32.7 bits (73), Expect = 1.4
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP ++ A SP S L + + PP + G RGS + +
Sbjct: 709 LPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSF 768
Query: 360 ERDLFKT-EEPATEEEEESAGDG---ERTLDGELDLL----EQDPLVPPPPSQAPLSAE 410
+ D K +EP TE+E S G E+T DG + L PP + L +E
Sbjct: 769 KSDQVKVKQEPGTEDEICSFSGGVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLESE 827
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 32.7 bits (73), Expect = 1.4
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP ++ A SP S L + + PP + G RGS + +
Sbjct: 709 LPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSF 768
Query: 360 ERDLFKT-EEPATEEEEESAGDG---ERTLDGELDLL----EQDPLVPPPPSQAPLSAE 410
+ D K +EP TE+E S G E+T DG + L PP + L +E
Sbjct: 769 KSDQVKVKQEPGTEDEICSFSGGVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLESE 827
>gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens]
Length = 646
Score = 32.7 bits (73), Expect = 1.4
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 329 SQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGE 388
S+ PPP + G + RQ L D E EEEEE G G T +
Sbjct: 5 SRQQPPPPRRAGAACTLRQKLIFSPCSDCEEE-----------EEEEEEEGSGHSTGEDS 53
Query: 389 LDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKVRQKDI 429
E D +PP S ER P P +P ++D+
Sbjct: 54 A-FQEPDSPLPPARSPTEPGPERRRSPGPAPGSPGELEEDL 93
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 4 PAAPGTGGPPANGNGNGGGK 23
P+ PG+GGPPA G+G G G+
Sbjct: 376 PSVPGSGGPPAGGSGFGRGQ 395
>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform b [Homo sapiens]
Length = 894
Score = 32.3 bits (72), Expect = 1.9
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 287 LQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRR 346
L L Q G ++ + + V S+ AA+P GES+ PPP ++ +
Sbjct: 703 LLKLPAQAHWASGRLDISNKTYETVASLGAATPQ------GESEDCPPPLPVKNSSRTLV 756
Query: 347 QLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAP 406
Q + S D +E +E P T E S + PL P PSQAP
Sbjct: 757 QGCARHASGD-RSEVSSLSSEAPETPESLGSPASSSSLMS---------PLEPGDPSQAP 806
Query: 407 LSAE 410
++E
Sbjct: 807 PNSE 810
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 32.3 bits (72), Expect = 1.9
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 287 LQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRR 346
L L Q G ++ + + V S+ AA+P GES+ PPP ++ +
Sbjct: 712 LLKLPAQAHWASGRLDISNKTYETVASLGAATPQ------GESEDCPPPLPVKNSSRTLV 765
Query: 347 QLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAP 406
Q + S D +E +E P T E S + PL P PSQAP
Sbjct: 766 QGCARHASGD-RSEVSSLSSEAPETPESLGSPASSSSLMS---------PLEPGDPSQAP 815
Query: 407 LSAE 410
++E
Sbjct: 816 PNSE 819
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 32.0 bits (71), Expect = 2.4
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP A+D+++ + P + + P +LRG + D+L +
Sbjct: 916 LPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPP-----SADDNLKTPS 970
Query: 360 ERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPK 416
ER L A +++ L G L D L PP + AE+ PK
Sbjct: 971 ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPK 1027
Score = 30.8 bits (68), Expect = 5.4
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP A+D+++ + P + + P +LRG + D+L +
Sbjct: 461 LPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPP-----SADDNLKTPS 515
Query: 360 ERDLFKTEEPATEE----EEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFP 415
ER L A + E G + D L + L P PPS P + + + P
Sbjct: 516 ERQLTALPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTP 575
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 32.0 bits (71), Expect = 2.4
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP A+D+++ + P + + P +LRG + D+L +
Sbjct: 934 LPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPP-----SADDNLKTPS 988
Query: 360 ERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPK 416
ER L A +++ L G L D L PP + AE+ PK
Sbjct: 989 ERQLTPLPPSAPTSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPK 1045
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 32.0 bits (71), Expect = 2.4
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 12/183 (6%)
Query: 328 ESQLAPPPSKLRG---RRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERT 384
E +L +LR R + + L +Q+ E L + EE E+EE ER
Sbjct: 240 EERLCEQEERLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLREQEERL 299
Query: 385 LDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFT 444
+ E L EQ+ + + ER+ + LP ++ + ++E LE R +
Sbjct: 300 CEQEERLREQEERLCEQEERLREQEERLCEQEKLPGQERLLE-EVEKLLEQERRQ----- 353
Query: 445 LGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEI 504
++ + L+ R + E + L+Q + + D ++ +E L++ E + E E
Sbjct: 354 --EEQERLLERERLLEEVEELLEQER-LRQQDERLWQQETLQELERLRELERMLELGWEA 410
Query: 505 LYQ 507
LY+
Sbjct: 411 LYE 413
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 32.0 bits (71), Expect = 2.4
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 304 AEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQL--LTKQDSLDIYNER 361
A D QV A SP + S + PS + RR +R+QL T Q+ L+ +E
Sbjct: 84 ALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPKRRTARKQLPKRTIQEVLEEQSED 143
Query: 362 DLFKTEEPATEEEEESAGDGERTLDGELDLLEQD---PLVPPPP---SQAPLSAERVAFP 415
+ + + EEEEE+ + + + +D P PP P S+A E V+ P
Sbjct: 144 EDREAKRKKEEEEEETPKESLTEAEVATEKEGEDGDQPTTPPKPLKTSKAETPTESVSEP 203
Query: 416 K 416
+
Sbjct: 204 E 204
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 32.0 bits (71), Expect = 2.4
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYN 359
LPP A+D+++ + P + + P +LRG + D+L +
Sbjct: 461 LPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPP-----SADDNLKTPS 515
Query: 360 ERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPK 416
ER L A +++ L G L D L PP + AE+ PK
Sbjct: 516 ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPK 572
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 32.0 bits (71), Expect = 2.4
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 6 APGTGGPPANGNGNGGGKGKQAAPKGRE--AFRSQRRESEGSVDCPTLEFEYGDADGHAA 63
+P GG +G+ GGG G + +G A +R ES G+ E E D A
Sbjct: 28 SPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDA 87
Query: 64 ELSELYSYTENLEFTNNRRCFEEDFKTQVQGK 95
LS+ Y E+ E EE+ K +++ +
Sbjct: 88 VLSD-YESAEDSEGEEGEYSEEENSKVELKSE 118
>gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]
Length = 731
Score = 32.0 bits (71), Expect = 2.4
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 262 PHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELG----LPPLAEDSIQVVKSMRAA 317
P P +K + + V L E + L+ + G +PP K++
Sbjct: 241 PPLPAEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGFVRVPPRLPPRPVNGKTIPTQ 300
Query: 318 SPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEES 377
PP+ PPP KL R S ++L + S D+ DL ++++ +
Sbjct: 301 QPPTKV-----PPERPPPPKLSATRRSNKKLPFNRSSSDM----DL--------QKKQSN 343
Query: 378 AGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSR 437
G ++ QDP++PP P G P K + D+ L+ +
Sbjct: 344 LATGLSKAKSQV-FKNQDPVLPPRPK------------PGHPLYSKYMRGDVLVMLKQTE 390
Query: 438 NKFIGFTLGQDT 449
N ++ G+DT
Sbjct: 391 NNYLECQKGEDT 402
>gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens]
Length = 767
Score = 32.0 bits (71), Expect = 2.4
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 262 PHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELG----LPPLAEDSIQVVKSMRAA 317
P P +K + + V L E + L+ + G +PP K++
Sbjct: 277 PPLPAEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGFVRVPPRLPPRPVNGKTIPTQ 336
Query: 318 SPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEES 377
PP+ PPP KL R S ++L + S D+ DL ++++ +
Sbjct: 337 QPPTKV-----PPERPPPPKLSATRRSNKKLPFNRSSSDM----DL--------QKKQSN 379
Query: 378 AGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSR 437
G ++ QDP++PP P G P K + D+ L+ +
Sbjct: 380 LATGLSKAKSQV-FKNQDPVLPPRPK------------PGHPLYSKYMRGDVLVMLKQTE 426
Query: 438 NKFIGFTLGQDT 449
N ++ G+DT
Sbjct: 427 NNYLECQKGEDT 438
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 31.6 bits (70), Expect = 3.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 333 PPPSKLRGRRGSR--------RQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERT 384
PPP+ + R SR L+ + Y E D + ++ ++EE+E +GE +
Sbjct: 882 PPPAAMALNRRSRSLDTAETLEMELSNSHLVQGYLESDELQAQQEDSDEEDEEEEEGEWS 941
Query: 385 LDGELDLLEQDPLVPPPPSQAP 406
D L L + P P+ AP
Sbjct: 942 RDSPLSLYTEPPGAYDWPAWAP 963
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 31.6 bits (70), Expect = 3.2
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 5 AAPGTGGPPANGNGNGGGKG-KQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADGHAA 63
AA TG P + + +GGG G ++ A E R +R ES S E G + A
Sbjct: 180 AAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSP-----ESSSGHTEDKAG 234
Query: 64 ELSELYSYTENLEFTNNR-RCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDR-LEVVSR 121
S + + +T + R E +F V ++ E+ Q + ++ L DR +++ +
Sbjct: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSV----YINKEKRLQLSRMLNLTDRQVKIWFQ 290
Query: 122 ERRLK 126
RR+K
Sbjct: 291 NRRMK 295
>gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo
sapiens]
Length = 99
Score = 31.6 bits (70), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 300 LPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRR 346
LPPLA ++ K + AA PP PPPS+ RG+R ++
Sbjct: 15 LPPLASVGKKMAKKIAAAPPPP----------PPPPSERRGKRAEQK 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,571,305
Number of Sequences: 37866
Number of extensions: 1540677
Number of successful extensions: 8467
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 8307
Number of HSP's gapped (non-prelim): 181
length of query: 834
length of database: 18,247,518
effective HSP length: 111
effective length of query: 723
effective length of database: 14,044,392
effective search space: 10154095416
effective search space used: 10154095416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.