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Search of human proteins with 55742678
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
(547 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 1097 0.0
gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosom... 330 2e-90
gi|13540590 family with sequence similarity 117, member A [Homo ... 258 8e-69
gi|39812378 RAN binding protein 9 [Homo sapiens] 58 3e-08
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 55 2e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 54 4e-07
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 52 2e-06
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 50 5e-06
gi|110349721 titin isoform novex-3 [Homo sapiens] 50 7e-06
gi|110349719 titin isoform N2-A [Homo sapiens] 50 7e-06
gi|110349717 titin isoform novex-2 [Homo sapiens] 50 7e-06
gi|110349713 titin isoform novex-1 [Homo sapiens] 50 7e-06
gi|110349715 titin isoform N2-B [Homo sapiens] 50 7e-06
gi|54860079 nadrin isoform 1 [Homo sapiens] 50 7e-06
gi|91208420 bassoon protein [Homo sapiens] 49 1e-05
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 49 1e-05
gi|122937321 UNC homeobox [Homo sapiens] 49 1e-05
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 49 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 49 2e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 49 2e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 49 2e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 48 2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 3e-05
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 48 3e-05
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 1097 bits (2838), Expect = 0.0
Identities = 547/547 (100%), Positives = 547/547 (100%)
Query: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL 60
MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL
Sbjct: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL 60
Query: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ
Sbjct: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
Query: 121 APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPY 180
APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPY
Sbjct: 121 APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPY 180
Query: 181 LTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQ 240
LTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQ
Sbjct: 181 LTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQ 240
Query: 241 LQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVE 300
LQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVE
Sbjct: 241 LQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVE 300
Query: 301 GISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSC 360
GISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSC
Sbjct: 301 GISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSC 360
Query: 361 SSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKYASSPKPNNSYMFKREPP 420
SSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKYASSPKPNNSYMFKREPP
Sbjct: 361 SSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKYASSPKPNNSYMFKREPP 420
Query: 421 EGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNS 480
EGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNS
Sbjct: 421 EGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNS 480
Query: 481 PNSGQSSALATLTVEQLSSRVSFTSLSDDTSTAGSMEASVQQPSQQQQLLQELQGEDHIS 540
PNSGQSSALATLTVEQLSSRVSFTSLSDDTSTAGSMEASVQQPSQQQQLLQELQGEDHIS
Sbjct: 481 PNSGQSSALATLTVEQLSSRVSFTSLSDDTSTAGSMEASVQQPSQQQQLLQELQGEDHIS 540
Query: 541 AQNYVII 547
AQNYVII
Sbjct: 541 AQNYVII 547
>gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 13 [Homo sapiens]
Length = 345
Score = 330 bits (846), Expect = 2e-90
Identities = 189/322 (58%), Positives = 224/322 (69%), Gaps = 15/322 (4%)
Query: 197 MKDKATQTPSCWAEEGAEKR--SHQRSASWGSADQLKEQIAKLRQQLQRSKQSSRHSKEK 254
M+DKATQT S WAEE +EK+ SH+RSASWGS DQLKE IAKLRQQLQRSK SSRH ++K
Sbjct: 1 MRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKE-IAKLRQQLQRSKHSSRHHRDK 59
Query: 255 DRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKEN 314
+RQSP HGNH I+ QA +S +P+ I + KS+ SR +VEG++ E+E + IKE
Sbjct: 60 ERQSPFHGNHAAINQCQAPVPKSALIPV--IPITKSTGSRFRNSVEGLNQEIE-IIIKET 116
Query: 315 NGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFC--- 371
KEE P DIPDG RAP P RSSSTRSIDTQTP +R S+ SS S VSP
Sbjct: 117 GEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLT 176
Query: 372 -PPESQDGSPCSTEDLLYD-RDKDSGSSSPLPKYASSPKPNNSYMFKREPPEGCERVKVF 429
E + SPCS +DLL D RDK++G++SPLPKYA+SPKPNNSYMFKREPPEGCERVKVF
Sbjct: 177 ISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVF 236
Query: 430 EEMASRQPISAPLFSCPDKNKVNFIP-TGSAFCPVKLLGPLLPASDLMLKNSPNSGQSSA 488
EE + +Q P F CPDKNKVNFIP +GSAFC V +L PLLP DL LK SG S
Sbjct: 237 EECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLK---GSGHSLT 293
Query: 489 LATLTVEQLSSRVSFTSLSDDT 510
+ T L ++ SLS +T
Sbjct: 294 VTTGMTTTLLQPIAVASLSTNT 315
>gi|13540590 family with sequence similarity 117, member A [Homo
sapiens]
Length = 453
Score = 258 bits (660), Expect = 8e-69
Identities = 189/473 (39%), Positives = 235/473 (49%), Gaps = 97/473 (20%)
Query: 35 AAAGSGNGA-----GGGGGV--GCAPAAGAGRL---LQPIRATVPYQLLRGSQHSPTRPP 84
AA G G GA GG GG+ GC+P A AG LQP+RAT+P+QL + Q
Sbjct: 5 AAGGRGGGAWGPGRGGAGGLRRGCSPPAPAGSPRAGLQPLRATIPFQLQQPHQRR----- 59
Query: 85 VAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERR 144
G R AA+ P AP
Sbjct: 60 -------------DGGGR----------AASVPCSVAPE--------------------- 75
Query: 145 SPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHVHYPSCMKDKATQT 204
VCR + +RRT SLDTI YL GQWPRD + C DKATQT
Sbjct: 76 ---KSVCRPQPLQ---------VRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQT 123
Query: 205 PSCWAE---EGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRSKQSSRHSKEKDRQSPLH 261
P W E E A +H+RSASWGS D KE I+KL+QQLQR+K SR KEK+R SPL
Sbjct: 124 PLSWQELEGERASSCAHKRSASWGSTDHRKE-ISKLKQQLQRTK-LSRSGKEKERGSPLL 181
Query: 262 GNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPC---NVEGISPELEKVFIKENNGKE 318
G+H +A S P S V + S PC ++EG++ ELE+VF+KE G+E
Sbjct: 182 GDHAVRGALRA----SPPSFPSGSPVLRLS----PCLHRSLEGLNQELEEVFVKE-QGEE 232
Query: 319 EVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQDG 378
E+ + LDIPDG RAP P S + P S S S SP E G
Sbjct: 233 ELLRILDIPDGHRAPAPPQ-SGSCDHPLLLLEPGNLASSPSMSLASPQPCGLASHEEHRG 291
Query: 379 SPCSTEDLLYDRDK--------DSGSSSPLPKYASSPKPNNSYMFKREPPEGCERVKVFE 430
+ D+ + GS SP+ +A+SP+PN+SY+FKREPPEGCE+V+VFE
Sbjct: 292 AAEELASTPNDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYIFKREPPEGCEKVRVFE 351
Query: 431 EMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNSPNS 483
E S P A L SCPDKNKV+F PTGSAFCPV L+ PL P + +N P++
Sbjct: 352 EATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVNLMKPLFPGMGFIFRNCPSN 404
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 57.8 bits (138), Expect = 3e-08
Identities = 46/138 (33%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 12 SSQTPHPPSQRMRRSAAGSPPAVAA---------------------AGSGNGAGGGGGVG 50
S Q P PP Q+ ++ SPP AA AGS G GG G+G
Sbjct: 2 SGQPPPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLG 61
Query: 51 CAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPS--S 108
AA A LL P P P PP +AAA + G PG A GP P+ +
Sbjct: 62 ---AAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGA 118
Query: 109 PTPPAAAAPAEQAPRAKG 126
PTP A + AP G
Sbjct: 119 PTPALVAGSSAAAPFPHG 136
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 55.1 bits (131), Expect = 2e-07
Identities = 110/490 (22%), Positives = 170/490 (34%), Gaps = 77/490 (15%)
Query: 63 PIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAP 122
P R T P ++ +H +R PV S SL G S SS + + +P ++ P
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSG-------SSSSSSSSRSRSPPKKPP 375
Query: 123 RAKGRPRRSPESHRRSSSPERR--SPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPY 180
+ P R S+SP RR P P K + S R S + G
Sbjct: 376 KRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG-R 434
Query: 181 LTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQ 240
+G+ + H + ++ + P E +E + +AD ++++ RQ
Sbjct: 435 TSGKVTK----HKGTEKRESPSPAPKPRKVELSES-EEDKGGKMAAADSVQQRRQYRRQN 489
Query: 241 LQRSKQS-SRHSKEKDRQSPLHGNHITIS----HTQATGSRSVPMPLSNISVPKSSVSRV 295
Q S S S S E +R H + + H+ + + P + P+ R
Sbjct: 490 QQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRS 549
Query: 296 PCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQE 355
P SP + + P P RR P P R T +P +
Sbjct: 550 P------SPPPTR--------RRRSPSPAPPPRRRRTPTPPPRRR-------TPSPPPRR 588
Query: 356 RSSSCSSHSPCV----SPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPK----YASSP 407
RS S +SP + SP PP+ + SP K S SP PK ++ P
Sbjct: 589 RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP-------PKRRASPSPPPKRRVSHSPPP 641
Query: 408 KPNNSYMFKREPPEGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLG 467
K +S + KR P + S S P NK P+ P
Sbjct: 642 KQRSSPVTKRRSPSLSSK----HRKGSSPSRSTREARSPQPNK-RHSPSPRPRAPQTSSS 696
Query: 468 PLLPASDLMLKNSPNSGQSSALATLTVEQLS--------------SRVSFTSLSDDTSTA 513
P P +SP QS + +T + ++S S S +S S +
Sbjct: 697 P--PPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVS 754
Query: 514 GSMEASVQQP 523
GS E + ++P
Sbjct: 755 GSPEPAAKKP 764
Score = 45.1 bits (105), Expect = 2e-04
Identities = 102/474 (21%), Positives = 155/474 (32%), Gaps = 93/474 (19%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLL 61
S + SSSSSSSS++ PP + +R++ SPP +P+A R
Sbjct: 354 SLSGSSSSSSSSRSRSPPKKPPKRTS--SPPRKTRR-------------LSPSASPPR-- 396
Query: 62 QPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA 121
+ R + P ++HSPT S S+ SP + +
Sbjct: 397 RRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSV------------SPGRTSGKVTKHKG 444
Query: 122 PRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYL 181
+ P +P+ + S G + AD QQ R + SS D+ +
Sbjct: 445 TEKRESPSPAPKPRKVELSESEEDKGGKMAAADSV--QQRRQYRRQNQQSSSDSGSSSSS 502
Query: 182 TGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKR-SHQRSASWGSADQLKEQIAKLRQQ 240
+ P+ HV E G +R S RSAS + KE + R++
Sbjct: 503 EDERPKRSHVKN---------------GEVGRRRRHSPSRSASPSPRKRQKETSPRGRRR 547
Query: 241 LQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVE 300
S +R R+SP S R P P P R +
Sbjct: 548 RSPSPPPTRR-----RRSP--------SPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPR 594
Query: 301 GISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYR--SSSTRSIDTQTPSVQERSS 358
SP +++ + K + P P R +P P R S S +P + RS
Sbjct: 595 RYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP 654
Query: 359 SCSS-----------------------HSPCVSPFCPPESQDGSPC--STEDLLYDRDKD 393
S SS HSP P P S P R
Sbjct: 655 SLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSP 714
Query: 394 SGSSSPLPKYASSPKPNNSYMFKREPPEGCERVKVFE------EMASRQPISAP 441
S S+ P+ + + +P+P P+ RV E A+++P + P
Sbjct: 715 SPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPP 768
Score = 40.4 bits (93), Expect = 0.004
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 2 STASSSSSSSSSQTP---HPPSQRMRR-SAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGA 57
S+ S S+ + S P H PS R R + SPP V GA +P+
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVR-----RGASSSPQRRQSPSPST 718
Query: 58 GRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSP----TPPA 113
+ + R P ++ + + SP +++ S+ P P A + P+P SP +P
Sbjct: 719 RPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPST 778
Query: 114 AAAPAEQAPRAKGRPRRSPESHRRS 138
+PA +AK P SP R S
Sbjct: 779 NWSPAVPVKKAKS-PTPSPSPPRNS 802
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 53.9 bits (128), Expect = 4e-07
Identities = 106/446 (23%), Positives = 156/446 (34%), Gaps = 90/446 (20%)
Query: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSP------PAVAAAGSGNGAGGGGGVGCAPA 54
MS+ S SS P PS R R S+A SP P + S +G+ G
Sbjct: 1396 MSSNQSISSPVLDAVPRTPS-RERSSSASSPEMKDGLPRTPSRRSRSGSSPG-------- 1446
Query: 55 AGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPG-PGAARGPSPSSPTPPA 113
LR +P+R ++ ++ + +P P R SSP P A
Sbjct: 1447 ------------------LRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKA 1488
Query: 114 AAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSL 173
Q PR + R SPE + + +P+R GS D+ + R SS
Sbjct: 1489 LP----QTPRPRSRSPSSPELNNKCLTPQRERSGSE-SSVDQKTVARTPLGQRSRSGSSQ 1543
Query: 174 DTITGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQ 233
+ P + Q + ++ +P A+ R RS S D
Sbjct: 1544 ELDVKPSASPQ------------ERSESDSSPDSKAKTRTPLRQRSRSGSSPEVD----- 1586
Query: 234 IAKLRQQLQRSKQ-SSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNI--SVPKS 290
+K R +RS+ SS K+K R +P +GS S P P + ++P+
Sbjct: 1587 -SKSRLSPRRSRSGSSPEVKDKPRAAP----------RAQSGSDSSPEPKAPAPRALPRR 1635
Query: 291 SVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAP--------LPAHYRSSS 342
S S G SPE + E K G R+ P RSS
Sbjct: 1636 SRSGSSSKGRGPSPEGSS---STESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSR 1692
Query: 343 TRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPK 402
+ T+ + RS S SS SP PP + S+ + + SS +
Sbjct: 1693 SSPELTRKARLSRRSRSASS-SPETRSRTPPRHRRSPSVSSPE-----PAEKSRSSRRRR 1746
Query: 403 YASSPKPNNSYMFKREP---PEGCER 425
ASSP+ + R P P G +R
Sbjct: 1747 SASSPRTKTTSRRGRSPSPKPRGLQR 1772
Score = 52.8 bits (125), Expect = 8e-07
Identities = 110/434 (25%), Positives = 152/434 (35%), Gaps = 74/434 (17%)
Query: 5 SSSSSSSSSQTPHPPSQRMR---RSAAGSPPAVAAAGSGNGAGGGGG----VGCAPAAGA 57
++++ SSS+TP P+ RSA + P V AGS A APA
Sbjct: 2319 TAANYPSSSRTPQAPASANLVGPRSAHATAP-VNIAGSRTAAALAPASLTSARMAPALSG 2377
Query: 58 GRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPA--AA 115
L P Y+ + G T PP+ A S P +R S +P+P +
Sbjct: 2378 ANLTSPRVPLSAYERVSGR----TSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQ 2433
Query: 116 APAEQA-PRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLD 174
AP++ P A+ +PR S S + +PV A SQ + + + TSS
Sbjct: 2434 APSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPV-----AGSQSLSSGAVATTTSSAG 2488
Query: 175 TITGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWA--EEGAEKRSHQRSASWGSADQLKE 232
G L+ P PH Q PS A + E+RS S+S S+
Sbjct: 2489 DHNG-MLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSS--- 2544
Query: 233 QIAKLRQQLQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSV 292
S SS S S G+ + + A + VP P PK +V
Sbjct: 2545 ---------SSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL--KRVPSPTP---APKEAV 2590
Query: 293 SRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPS 352
EG PE K + S SSS+ S + + S
Sbjct: 2591 R------EGRPPEPTPAKRKRRSSSSSSSSSSSSSSS----------SSSSSSSSSSSSS 2634
Query: 353 VQERSSSCSSHSPCVSPF----------------CPPESQDGSPCSTEDLLYDRDKDSGS 396
SSS SS S SP P E + SP D L RD S S
Sbjct: 2635 SSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSL--RDSRSLS 2692
Query: 397 SSPLPKYASSPKPN 410
SP+ + SP+P+
Sbjct: 2693 YSPVERRRPSPQPS 2706
Score = 51.2 bits (121), Expect = 2e-06
Identities = 130/574 (22%), Positives = 187/574 (32%), Gaps = 90/574 (15%)
Query: 7 SSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIR- 65
S S ++ + S R RS + SP + S A G PA R P R
Sbjct: 543 SRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRR 602
Query: 66 ---ATVPYQLLRGSQHSP------TRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAA 116
+ P + R +P TR PV + S G +R S TP
Sbjct: 603 RSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR-----SRTPARRGR 657
Query: 117 PAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTI 176
+ P +GR R + R S R R+ + + R+ S +RR S
Sbjct: 658 SRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRT 717
Query: 177 TGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAK 236
P G+ S + +++ S E + S +RS S S +
Sbjct: 718 --PQRRGRSGSSSERKNKSRTSQRRSRSNSS-PEMKKSRISSRRSRSLSSPRSKAKSRLS 774
Query: 237 LRQQL---------------QRSKQSSRHSKEKDRQSPLHGNHITI--------SHTQAT 273
LR+ L +RS+ S K K R P + + ++ +
Sbjct: 775 LRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQS 834
Query: 274 GSRSVPMPLSNISVP--KSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRR 331
S S P P P + S++ N + ++P+ F E++ E+ R
Sbjct: 835 HSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCF--ESSPDPELKS--------R 884
Query: 332 APLPAHYRSSSTRSIDTQTPSVQERSSSCS--------------SHSPCVSP-------- 369
P SS + + TP Q S S S SHS SP
Sbjct: 885 TPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSR 944
Query: 370 FCPPESQDGSPCS-TEDLLYDRDKDSGSSSPLPKYASSPKPNNSYMFKREPPEGCERVKV 428
P S+ SPCS E L R SGSSSP K P S+ P KV
Sbjct: 945 TTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISP-----YPKV 999
Query: 429 FEEMASRQPISAPLFSCP-DKNK---VNFIPTGSAFCP-VKLLGP----LLPASDLMLKN 479
+ +S CP +K+K V P + C VK P S L LK
Sbjct: 1000 KAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKG 1059
Query: 480 SPNSGQSSALATLTVEQLSSRVSFTSLSDDTSTA 513
+ T + E S SL + T+
Sbjct: 1060 QSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTS 1093
Score = 45.4 bits (106), Expect = 1e-04
Identities = 78/290 (26%), Positives = 109/290 (37%), Gaps = 46/290 (15%)
Query: 4 ASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAG-SGNGAGGGGGVGCAPAAGAG---- 58
++S+ S+SSS T S+ RSAA A AG S + A G G G AP + G
Sbjct: 263 STSADSASSSDT----SRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTST 318
Query: 59 -RLLQPIRATV----PYQLLRGS--QHSPTRPPVAAAAASLGS---LPGPGAAR----GP 104
R P AT PY+ + S TRP + +S G P P A P
Sbjct: 319 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSP 378
Query: 105 SPSSPTPPAAAA---PAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQV 161
P + TP + P+E +P P +SPE +SSS E P + + S
Sbjct: 379 QPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSP 438
Query: 162 RTSSTIRRTSSLDTITGPYLT-----GQWPRD-PHVHYPS----CMKDKATQTPSCWAEE 211
+ S I+ + G+ RD H H PS + AT
Sbjct: 439 ESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSR 498
Query: 212 GAEKRSHQRSAS--WGSADQLKEQIAKLRQQLQRSKQSSRHSKEKDRQSP 259
KR H RS S W + ++ Q+ RS+ R + + Q P
Sbjct: 499 TPTKRGHSRSRSPQW--------RRSRSAQRWGRSRSPQRRGRSRSPQRP 540
Score = 43.1 bits (100), Expect = 6e-04
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLL 61
S++SSSSSSSSS S++ S + +++GS + G + P R+
Sbjct: 2532 SSSSSSSSSSSSS-----------SSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVP 2580
Query: 62 QPIRATVPYQLLR--------------------GSQHSPTRPPVAAAAASLGSLPGPGAA 101
P A P + +R S S + +++++S S ++
Sbjct: 2581 SPTPA--PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2638
Query: 102 RGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPER 143
S SS + P+ A P QA P++ P RRS SP +
Sbjct: 2639 SSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRK 2680
Score = 42.0 bits (97), Expect = 0.001
Identities = 73/289 (25%), Positives = 101/289 (34%), Gaps = 34/289 (11%)
Query: 6 SSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIR 65
S S SS P + RS + S P + A + G +P + L P R
Sbjct: 1537 SRSGSSQELDVKPSASPQERSESDSSPD-SKAKTRTPLRQRSRSGSSPEVDSKSRLSPRR 1595
Query: 66 ATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAK 125
+ GS P AA A GS P P +P P A + +K
Sbjct: 1596 SR------SGSSPEVKDKPRAAPRAQSGS------DSSPEPKAPAPRALPRRSRSGSSSK 1643
Query: 126 GRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTI--RRTSSLDTITGPYLTG 183
GR SPE + S P S R S + +T S RR SS + P LT
Sbjct: 1644 GR-GPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSR---SSPELTR 1699
Query: 184 QWPRDPHVHYPSCMKDKATQT-------PSCWAEEGAEKRSHQRSASWGSADQLKEQIAK 236
+ S + ++T PS + E AEK R S+ + K +
Sbjct: 1700 KARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRR 1759
Query: 237 LR------QQLQRSKQSSRHSKEKD--RQSPLHGNHITISHTQATGSRS 277
R + LQRS+ SR K + R+ + T Q + SRS
Sbjct: 1760 GRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRS 1808
Score = 39.7 bits (91), Expect = 0.007
Identities = 55/261 (21%), Positives = 92/261 (35%), Gaps = 42/261 (16%)
Query: 4 ASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQP 63
AS+ + S+ P++ R S++ S + +++ S + + G + + G L
Sbjct: 2511 ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL-- 2568
Query: 64 IRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPR 123
P +P VA R PSP+ A P
Sbjct: 2569 ----------------PVQPEVALK-------------RVPSPTPAPKEAVREGRPPEPT 2599
Query: 124 AKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTI-TGPYLT 182
R RRS S SSS S S + + S +SS+ +SS GP
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2659
Query: 183 GQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLK--EQIAKLRQQ 240
+ P P P + ++ + P + RS S+ ++ + Q + QQ
Sbjct: 2660 PK-PASPKKPPPGERRSRSPRKP-------IDSLRDSRSLSYSPVERRRPSPQPSPRDQQ 2711
Query: 241 LQRSKQSSRHSKEKDRQSPLH 261
S++ SR + D +SP H
Sbjct: 2712 SSSSERGSRRGQRGDSRSPSH 2732
Score = 38.9 bits (89), Expect = 0.012
Identities = 116/519 (22%), Positives = 171/519 (32%), Gaps = 105/519 (20%)
Query: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAG-R 59
MS ++ +++ +S+ P + M ++A +P A + PAA A
Sbjct: 2218 MSLRTAPAANLASRIPAASAAAMNLASARTPAIPTAVNLADSR--------TPAAAAAMN 2269
Query: 60 LLQPIRATVPYQLLRGSQHSPTRP---------PVAAAAASL-GSLPGPGAARGPSPSSP 109
L P A P + +PT P P A AA SL GS P AA PS SS
Sbjct: 2270 LASPRTAVAPSAVNLADPRTPTAPAVNLAGARTPAALAALSLTGSGTPPTAANYPS-SSR 2328
Query: 110 TPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRR 169
TP A A+ PR+ +P + S + +P S TS+ +
Sbjct: 2329 TPQAPASANLVGPRSAHAT--APVNIAGSRTAAALAPAS-------------LTSARMAP 2373
Query: 170 TSSLDTITGPYLT-GQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSAD 228
S +T P + + R P + ++TP + S S
Sbjct: 2374 ALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQ 2433
Query: 229 QLKEQIAKLRQQLQRSKQSSRHSKEKD----RQSPLHGNHITISHTQAT---------GS 275
+ + Q RS S S + + +P+ G+ S AT G
Sbjct: 2434 APSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGM 2493
Query: 276 RSVPMPLSNISVPKSSVSRVPCNVEGISPE-LEKVFIKENNGKEEVSKPLDIPDGRRAPL 334
SVP P VP S V P + P L + + S +
Sbjct: 2494 LSVPAP----GVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSS 2549
Query: 335 PAHYRSSSTRSIDTQ------------------TPSVQE-----------------RSSS 359
+ SS + S D++ TP+ +E RSSS
Sbjct: 2550 SSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSS 2609
Query: 360 CSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKY---ASSPKPNNSYMFK 416
SS S S S S S+ S SSSP P + PKP +
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPAS----P 2665
Query: 417 REPPEGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIP 455
++PP G E SR P P+ S D +++ P
Sbjct: 2666 KKPPPG--------ERRSRSP-RKPIDSLRDSRSLSYSP 2695
Score = 37.4 bits (85), Expect = 0.036
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLL 61
S++SSSSSSSSS + S S++ S + +++ S + + G P + +
Sbjct: 2609 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP 2668
Query: 62 QPIRATVPYQLLRGSQHSPT-RPPVAAAAASLGSLPGPGAARGPSPS-SPTPPAAAAPAE 119
P G + S + R P+ + S P R PSP SP +++
Sbjct: 2669 PP-----------GERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSER 2717
Query: 120 QAPRAKGRPRRSPESHRRSSSPERR 144
+ R + RSP RR +P R
Sbjct: 2718 GSRRGQRGDSRSPSHKRRRETPSPR 2742
Score = 37.0 bits (84), Expect = 0.047
Identities = 77/349 (22%), Positives = 119/349 (34%), Gaps = 85/349 (24%)
Query: 101 ARGPSPSSPTPPA----AAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKA 156
A+ P+P P P + +++ P+ K + ++ R SS RR R +
Sbjct: 160 AKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRE------RKKSS 213
Query: 157 KSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKR 216
K ++ R+ S ++ R P KDK + +R
Sbjct: 214 KKKKHRSESESKKRKH--------------RSPTPKSKRKSKDKKRKRSRSTTPAPKSRR 259
Query: 217 SHQRSASWGSADQLKEQIAKLRQQLQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSR 276
+H RS S SA RS+ S +K +HT A R
Sbjct: 260 AH-RSTSADSASS---------SDTSRSRSRSAAAK---------------THTTALAGR 294
Query: 277 SVPMPLSN--------ISVPKSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPD 328
S P P S S P ++ ++ P + E + + + ++ K+E S P
Sbjct: 295 S-PSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPS 353
Query: 329 GRRA----------PLPAHYRSSSTRSIDTQTPSVQE------RSSSCSSHSPCVSPFCP 372
R+ PL A S + + T TP QE +S SP SP
Sbjct: 354 PERSSTGPEPPAPTPLLAERHGGSPQPLAT-TPLSQEPVNPPSEASPTRDRSPPKSPEKL 412
Query: 373 PE--SQDGSPCSTEDLLYDRDKDSGSSSPLP--------KYASSPKPNN 411
P+ S + SP S + R S SP P + +SSP N
Sbjct: 413 PQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKN 461
Score = 35.4 bits (80), Expect = 0.14
Identities = 73/333 (21%), Positives = 116/333 (34%), Gaps = 57/333 (17%)
Query: 83 PPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSS-- 140
PP + + + P P S T + + R + R R SP S RRS S
Sbjct: 1845 PPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRT 1904
Query: 141 ----PERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHVHYPSC 196
RS SPV R + + RT RR S T P+
Sbjct: 1905 SVTRRRSRSRASPVSR----RRSRSRTPPVTRRRSRSRT------------------PTT 1942
Query: 197 MKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRSKQSSRHSKEKDR 256
+ ++TP +RS R+ + + R + + S + R S+ +
Sbjct: 1943 RRRSRSRTPPV-----TRRRSRSRT----------PPVTRRRSRSRTSPITRRRSRSRTS 1987
Query: 257 QSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKENNG 316
+ S SRS P++ + S SR P + S + ++
Sbjct: 1988 PVTRRRSRSRTSPVTRRRSRSRTSPVTR----RRSRSRTPPAIRRRSRSRTPLLPRK--- 2040
Query: 317 KEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQ 376
+ PL I R+ P R RS+ P+++ RS+S SS S PP ++
Sbjct: 2041 RSRSRSPLAIRRRSRSRTPRTARGK--RSLTRSPPAIRRRSASGSSSDRSRSA-TPPATR 2097
Query: 377 DGSPCSTEDLLYDRDKDSGSSSPLPKYASSPKP 409
+ S T + + + S S P + SP P
Sbjct: 2098 NHSGSRTPPVALNSSRMSCFSRP----SMSPTP 2126
Score = 30.8 bits (68), Expect = 3.3
Identities = 50/224 (22%), Positives = 73/224 (32%), Gaps = 54/224 (24%)
Query: 6 SSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAG------SGNGAGGGGGVGCAPAAGAGR 59
S SS ++ PP Q RS++ P A SG+ + V R
Sbjct: 892 SGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSR 951
Query: 60 LLQPIRATVPYQLLRGSQHS----------PTRPPVAAAAASLGSLPGPGAARGPSPS-- 107
+ P + V +LL HS P PP + + S+ P A P PS
Sbjct: 952 SVSPC-SNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSLS 1010
Query: 108 ------------------------------SPTPPAAAAPAEQAPRAKGRPRRSPESHRR 137
S TPP + + + KG+ + SP+
Sbjct: 1011 GSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSD 1070
Query: 138 SSSPERR-----SPGSPVCRADKAKSQQVRTSSTIRRTSSLDTI 176
+SSPE R SP K + R+SS + +S I
Sbjct: 1071 TSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPI 1114
Score = 29.3 bits (64), Expect = 9.7
Identities = 66/344 (19%), Positives = 120/344 (34%), Gaps = 47/344 (13%)
Query: 69 PYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRP 128
PY L+R S S + P R SSP + ++ R++
Sbjct: 170 PYSLVRESSSSRSPTPKQKKKKKKKD-----RGRRSESSSPRRERKKSSKKKKHRSESES 224
Query: 129 RR------SPESHRRSSSPERR-----SPGSPVCRADKAKSQQVRTSSTIRRTSSLDTIT 177
++ +P+S R+S +R+ +P RA ++ S +SS R+ S
Sbjct: 225 KKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAA 284
Query: 178 GPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKL 237
+ T R P S + + + ++E G S QR +S +A + +
Sbjct: 285 KTHTTALAGRSP-----SPASGRRGEGDAPFSEPGTT--STQRPSSPETATKQPSSPYED 337
Query: 238 RQQLQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPC 297
+ + ++ K ++R S +R S T P+ ++ P
Sbjct: 338 KDKDKKEKSATRPSPSPERSS-----------TGPEPPAPTPLLAERHGGSPQPLATTPL 386
Query: 298 NVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERS 357
+ E ++P E + P +P SSS S + P+ R
Sbjct: 387 SQEPVNPPSEA---SPTRDRSPPKSPEKLPQS----------SSSESSPPSPQPTKVSRH 433
Query: 358 SSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLP 401
+S S SP +P + S ++++ + R K S S P
Sbjct: 434 ASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTP 477
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 51.6 bits (122), Expect = 2e-06
Identities = 53/152 (34%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 3 TASSSSSSSSSQTPHP--PSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL 60
T + ++S+ S + P P RSAA PPA A+ +G AG G AP G GR
Sbjct: 56 TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAP--GRGRA 113
Query: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
R+ P RGS R A AA+S G+ P A R P P T A + A +
Sbjct: 114 AATRRSPAP-GTARGSPAGVERAGGATAASSAGTRSVP-ARRLPPPCGGTSLGAGSRALR 171
Query: 121 APRAKGRPRRSPESHRRSSS---PERRSPGSP 149
P + P RSP S RR ++ P PG+P
Sbjct: 172 RPGSAALP-RSPSSSRRWAAMPGPGAPRPGAP 202
Score = 37.4 bits (85), Expect = 0.036
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 83 PPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGR-------PRRSPESH 135
PP A AAS GS PGA G P AA P +A RA GR P R+P
Sbjct: 54 PPTVAPAASAGSQEHPGA--GGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRG 111
Query: 136 RRSSSPERRSPGSPVCRADKA 156
R +++ RRSP R A
Sbjct: 112 RAAAT--RRSPAPGTARGSPA 130
Score = 36.6 bits (83), Expect = 0.061
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 26/129 (20%)
Query: 18 PPSQRMRRSAAG----SPPAVAAAGSGNGAGGGGGVGCAPAAG-----AGRLLQPIRATV 68
PP + R A SP A GS G GG A +AG A RL P T
Sbjct: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGT- 161
Query: 69 PYQLLRGSQHSPTRPPVAAAAASLGS------LPGPGAARGPSPSS-------PTPPAAA 115
L + RP AA S S +PGPGA R +P + PPAAA
Sbjct: 162 ---SLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAA 218
Query: 116 APAEQAPRA 124
A P A
Sbjct: 219 ASVAPPPPA 227
Score = 32.7 bits (73), Expect = 0.88
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 97 GP-GAARGPSPSSPTPPAAAAPAEQAPRAKGR---PRRS----PESHRRSSSPERRSPGS 148
GP GA RG SP + PAA+A +++ P A G P RS P + ++ R P
Sbjct: 44 GPAGARRGHSPPT-VAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
Query: 149 PVCRA 153
P CRA
Sbjct: 103 PPCRA 107
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 50.1 bits (118), Expect = 5e-06
Identities = 85/320 (26%), Positives = 117/320 (36%), Gaps = 79/320 (24%)
Query: 3 TASSSSSSSSSQTP-----HPPSQR------MRRSAAGSPP----AVAAAGSGNGAGGGG 47
+ASS+++++SS P HPPS R +R + A +P +A A + GA G
Sbjct: 39 SASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTGALAGS 98
Query: 48 GVGCAPAAG--------AGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAAS-LGSLPG- 97
+ A AA GR + P L S+H TR P A A+ L PG
Sbjct: 99 RLRAAAAAAHDQEAAAPTGRRWRRRPGPSP-PLQPRSRHPHTRYPRAVPEATPLRPPPGT 157
Query: 98 -------PGAARGPSPSSPTPPAAAAPAE-----QAPRAKGRPRRSPESHRRSS----SP 141
PG P P+ P A P +APR PRRSP S SP
Sbjct: 158 RPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSP 217
Query: 142 ERRS--------------PGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPR 187
RR+ P P C + + +RT RTSS T+ G
Sbjct: 218 GRRNGKRAAGKGTTPQPQPPPPPCATRREEDMALRTRD---RTSSRGTVFRAADWGFGRS 274
Query: 188 DPHV------------HYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSAD----QLK 231
+ H+ H P+ ++ TQ W G R+ S GS D ++
Sbjct: 275 EQHLRGLTLIISCTLSHKPASLRRSGTQ---AWGPRGLPLRATPESFK-GSPDCTGPEIG 330
Query: 232 EQIAKLRQQLQRSKQSSRHS 251
+ LR L+R S S
Sbjct: 331 FDMELLRSSLERRPAHSSRS 350
Score = 32.0 bits (71), Expect = 1.5
Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 11/170 (6%)
Query: 54 AAGAGRLLQPIRATVPYQLLRGSQHSPT-RPPVAAAAASLGSLPGPGAARGPSPSSPTPP 112
AA G P R V Q GS+ P R +AAAA+ S P PG PS +
Sbjct: 11 AAPPGVAESPARPRVNEQW--GSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHS 68
Query: 113 AAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSS 172
A APR PR + R+ + GS + A A Q + T RR
Sbjct: 69 RLRAAPAAAPRL--LPRVLAGAPARTGA----LAGSRLRAAAAAAHDQEAAAPTGRRWRR 122
Query: 173 LDTITGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSA 222
+ P R PH YP + + P A+ R RS+
Sbjct: 123 RPGPSPPLQPRS--RHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSS 170
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 87 AAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRR---SPESHRRSSSPER 143
AA L P P SPTPP+ AA A+ A + P R SP H R+ +P
Sbjct: 244 AAGQQLPHKTPPRIPPKPKSRSPTPPSIAAKAQLARQQSPSPIRHSPSPVRHVRAPTPSP 303
Query: 144 RSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHV 191
SP R + + VR+ +R+T + TGP + W ++ +V
Sbjct: 304 VRSVSPAARISTSPIRSVRSPLLMRKTQASTVATGPEVPPPWKQEGYV 351
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 87 AAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRR---SPESHRRSSSPER 143
AA L P P SPTPP+ AA A+ A + P R SP H R+ +P
Sbjct: 244 AAGQQLPHKTPPRIPPKPKSRSPTPPSIAAKAQLARQQSPSPIRHSPSPVRHVRAPTPSP 303
Query: 144 RSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHV 191
SP R + + VR+ +R+T + TGP + W ++ +V
Sbjct: 304 VRSVSPAARISTSPIRSVRSPLLMRKTQASTVATGPEVPPPWKQEGYV 351
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 87 AAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRR---SPESHRRSSSPER 143
AA L P P SPTPP+ AA A+ A + P R SP H R+ +P
Sbjct: 244 AAGQQLPHKTPPRIPPKPKSRSPTPPSIAAKAQLARQQSPSPIRHSPSPVRHVRAPTPSP 303
Query: 144 RSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHV 191
SP R + + VR+ +R+T + TGP + W ++ +V
Sbjct: 304 VRSVSPAARISTSPIRSVRSPLLMRKTQASTVATGPEVPPPWKQEGYV 351
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 87 AAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRR---SPESHRRSSSPER 143
AA L P P SPTPP+ AA A+ A + P R SP H R+ +P
Sbjct: 244 AAGQQLPHKTPPRIPPKPKSRSPTPPSIAAKAQLARQQSPSPIRHSPSPVRHVRAPTPSP 303
Query: 144 RSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHV 191
SP R + + VR+ +R+T + TGP + W ++ +V
Sbjct: 304 VRSVSPAARISTSPIRSVRSPLLMRKTQASTVATGPEVPPPWKQEGYV 351
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 87 AAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRR---SPESHRRSSSPER 143
AA L P P SPTPP+ AA A+ A + P R SP H R+ +P
Sbjct: 244 AAGQQLPHKTPPRIPPKPKSRSPTPPSIAAKAQLARQQSPSPIRHSPSPVRHVRAPTPSP 303
Query: 144 RSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHV 191
SP R + + VR+ +R+T + TGP + W ++ +V
Sbjct: 304 VRSVSPAARISTSPIRSVRSPLLMRKTQASTVATGPEVPPPWKQEGYV 351
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/242 (26%), Positives = 89/242 (36%), Gaps = 28/242 (11%)
Query: 3 TASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGG------GGVGCAPAAG 56
T + S + Q P PP+ AG P ++ + + +GGG G + P+ G
Sbjct: 513 TLNRKHISPAFQPPLPPTDGSTVVPAGPEPPPQSSRAESSSGGGTVPSSAGILEQGPSPG 572
Query: 57 AG---RLLQPIRATVPYQLLRGSQ-HSPTRPPVAAAAASLGSLPGPGAARGPSPSS---- 108
G + P+ A VP SQ S P AAA + S+ P A GPSP +
Sbjct: 573 DGSPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRA 632
Query: 109 -----PTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQ---Q 160
P PP P P + S S P RSP P + Q
Sbjct: 633 VKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAP 692
Query: 161 VRTSSTIRRTSSLDTITGPYLTGQWPRDPHVHYPSCMKDKATQTP----SCWAEEGAEKR 216
+ S+ R +SSL I P P+ P P +Q P + +E G E+
Sbjct: 693 SQLSAPRRYSSSLSPIQAP--NHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQP 750
Query: 217 SH 218
SH
Sbjct: 751 SH 752
Score = 38.1 bits (87), Expect = 0.021
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 73 LRGSQHSPTRPPVAAAAASLG----SLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRP 128
L H+P + P + LG SLP P G +P + P A P RP
Sbjct: 747 LEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLP---------RP 797
Query: 129 RRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRD 188
R P+ R S P P D + + T+S I T S ++ P+ +
Sbjct: 798 RPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKI-VTDSNSRVSEPHRS----IF 852
Query: 189 PHVHYPSCMKD 199
P +H S KD
Sbjct: 853 PEMHSDSASKD 863
Score = 35.0 bits (79), Expect = 0.18
Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 10 SSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVP 69
SSS + HPPS + PP + + G G AP+ +L P R +
Sbjct: 655 SSSGTSQHPPS------LSPKPPTRSPSPPTQHTGQPPGQPSAPS----QLSAPRRYSSS 704
Query: 70 YQLLRGSQHSPTRPPVAAAAA------SLGSLPGPGAA---RGPSPSSPTPPAAAAPAEQ 120
++ H P +PP A S G P P A G S TPP P
Sbjct: 705 LSPIQAPNHPPPQPPTQATPLMHTKPNSQGP-PNPMALPSEHGLEQPSHTPPQTPTPPST 763
Query: 121 APRAKGRPRRSPESHRRSSSPERRSP 146
P K P +PE P
Sbjct: 764 PPLGKQNPSLPAPQTLAGGNPETAQP 789
Score = 29.3 bits (64), Expect = 9.7
Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 317 KEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQ 376
+ V KP P P P H S+ PS+ + + S P PP
Sbjct: 630 RRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPP--- 686
Query: 377 DGSPCSTEDLLYDRDKDSGSSSPL--PKYASSPKPNNSYMFKREPPEGCERVKVFEEMAS 434
G P + L R + S S SP+ P + P + P + S
Sbjct: 687 -GQPSAPSQLSAPR-RYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPM-ALPS 743
Query: 435 RQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNSPNSGQSSA 488
+ P + P PT + P+ P LPA + +P + Q A
Sbjct: 744 EHGLEQPSHTPPQ------TPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHA 791
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 48.9 bits (115), Expect = 1e-05
Identities = 87/342 (25%), Positives = 122/342 (35%), Gaps = 63/342 (18%)
Query: 27 AAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVA 86
A P AG G G G G G G P+A AG P G+ S PPV
Sbjct: 11 AGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLP---------AAGAARSTAVPPVP 61
Query: 87 AAAASLGSLPGPGA-ARGPSP---------SSPTPPAAAA--PAEQAP---RAKGRPRRS 131
G PGPG+ +R P +SPTP A+A P ++P RA+G +
Sbjct: 62 GPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQE 121
Query: 132 PESHRRS---SSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQ-WPR 187
+ RR+ S +RS SP D+ T T PY Q P
Sbjct: 122 ADGPRRTLQVDSRTQRSGRSPSVSPDRG-----------------STPTSPYSVPQIAPL 164
Query: 188 DPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWG-----SADQLKEQIAKLRQQLQ 242
P C T TPS + ++ G Q+KE + L Q+Q
Sbjct: 165 PSSTLCPICKTSDLTSTPSQPNFNTCTQCHNKVCNQCGFNPNPHLTQVKEWLC-LNCQMQ 223
Query: 243 RSKQSSRHSKEKDR-QSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVEG 301
R+ + + + Q LH ++ +H+ A PL P SR P +
Sbjct: 224 RALGMDMTTAPRSKSQQQLHSPALSPAHSPA------KQPLGK---PDQERSRGPGGPQP 274
Query: 302 ISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSST 343
S + E G + + P ++ GR +P P ST
Sbjct: 275 GSRQAETARATSVPGPAQAAAPPEV--GRVSPQPPQPTKPST 314
Score = 37.0 bits (84), Expect = 0.047
Identities = 45/149 (30%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPA-VAAAGSGNGAGGGGG--VGCAPAAGAG 58
S A S S S S T H + GS + A SG A G + + G G
Sbjct: 1402 SPAGSERSPSPSSTAHSYGHSPTTANYGSQTEDLPQAPSGLAAAGRAAREKPLSASDGEG 1461
Query: 59 RLLQPIRATVPYQLLRGSQHSPTRP--PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAA 116
QP RA + S P P P + S G + GP A S +P+P A
Sbjct: 1462 GTPQPSRAYSYF----ASSSPPLSPSSPSESPTFSPGKM-GPRATAEFSTQTPSP----A 1512
Query: 117 PAEQAPRAKGRPRRSPESHRRSSSPERRS 145
PA PR+ G P SP + + +P R S
Sbjct: 1513 PASDMPRSPGAPTPSPMVAQGTQTPHRPS 1541
Score = 36.2 bits (82), Expect = 0.079
Identities = 52/206 (25%), Positives = 70/206 (33%), Gaps = 25/206 (12%)
Query: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL 60
+ ++ +S SS+S + P SQ G+P A A G G +PA
Sbjct: 1356 LHSSPASPSSASKEIGMPFSQ-----GPGTPATTAVAPCPAGLPRGYMTPASPAGSE--- 1407
Query: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
R+ P HSPT + L P AA G + A P
Sbjct: 1408 ----RSPSPSSTAHSYGHSPTTANYGSQTEDLPQAPSGLAAAGRA-------AREKPLSA 1456
Query: 121 APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTIT-GP 179
+ G P+ S +SS SP SP + + R T+ T T P
Sbjct: 1457 SDGEGGTPQPSRAYSYFASSSPPLSPSSPSESPTFSPGKMGP-----RATAEFSTQTPSP 1511
Query: 180 YLTGQWPRDPHVHYPSCMKDKATQTP 205
PR P PS M + TQTP
Sbjct: 1512 APASDMPRSPGAPTPSPMVAQGTQTP 1537
Score = 35.0 bits (79), Expect = 0.18
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPI 64
+++ S S Q H P+ S A P G GG P G+ R +
Sbjct: 231 TTAPRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGG-------PQPGS-RQAETA 282
Query: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSL-PGPGAARGPSPSSPTPPAAAAPAEQA 121
RAT S P AAA +G + P P PS + P PPA APA+ A
Sbjct: 283 RAT-----------SVPGPAQAAAPPEVGRVSPQPPQPTKPSTAEPRPPAGEAPAKSA 329
Score = 32.3 bits (72), Expect = 1.1
Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 29/166 (17%)
Query: 12 SSQTPHP--PSQRMRRSAAGSPPAVAAAGSGNGAGGG-----GGVGCAPAAGAGRLLQP- 63
S Q P P PS R AG PA +A G G G G GA L Q
Sbjct: 303 SPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQAS 362
Query: 64 -IRATVPYQLLRGSQHSPTR--PPVAAAAAS-------LGSLPGPGAARGPSPSSPTPPA 113
+ + P +G Q +P++ P + AS LGS PGPG P+P + T P
Sbjct: 363 TLMSVQPEADTQG-QPAPSKGTPKIVFNDASKEAGPKPLGSGPGPG----PAPGAKTEPG 417
Query: 114 AAAPAEQAPRAKGR------PRRSPESHRRSSSPERRSPGSPVCRA 153
A P A + P+ H+ +S + P RA
Sbjct: 418 ARMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKERA 463
Score = 31.6 bits (70), Expect = 2.0
Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 7/144 (4%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGN-GAGGGGGVGCAPAAGAGRLLQP 63
S ++ S P Q R AA P + S +G G LQP
Sbjct: 3730 SGPAALQSKAEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQP 3789
Query: 64 IRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPR 123
P Q L ++ P +A S P GPS ++ PA AEQ
Sbjct: 3790 -----PQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNG 3844
Query: 124 AKGRPRRSPESHRRSSSPERRSPG 147
+KG ++P+ R + PG
Sbjct: 3845 SKG-TAKAPQQGRAPQAQPAPGPG 3867
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 48.9 bits (115), Expect = 1e-05
Identities = 125/528 (23%), Positives = 180/528 (34%), Gaps = 83/528 (15%)
Query: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPP-AVAAAGSGNGAGGGGGVGCAPAAGAGR 59
+S A+ S + S P P+ PP AVA + +G PAA G
Sbjct: 559 VSLAAGSLPTQSQPAPAGPAATTVLQGVTLPPSAVAMLNTPDGLVQPA----TPAAATGE 614
Query: 60 LLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAE 119
P+ P +P PP + LG L P A + P +PTP AAA P
Sbjct: 615 AA-PVLTVQP---------APQAPPAVSTPLPLG-LQQPQAQQ--PPQAPTPQAAAPPQA 661
Query: 120 QAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTIT-- 177
P+ S +SSPE+ G P A Q + + S ++
Sbjct: 662 TTPQ---------PSPGLASSPEKIVLGQPPSATPTAILTQDSLQMFLPQERSQQPLSAE 712
Query: 178 GPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKL 237
GP+L+ P V P +D A TP G ++ AS A Q+ A L
Sbjct: 713 GPHLS--VPASVIVSAPPPAQDPAPATPVA-KGAGLGPQAPDSQASPAPAPQI-PAAAPL 768
Query: 238 RQQLQRSKQSSRHSKEKDRQSPLHGN-HITISHTQATGSRSVPMPLSNISVPKSSVSRVP 296
+ S S H Q+PL + H+ H SR P S +S P S P
Sbjct: 769 KGPGPSSSPSLPH------QAPLGDSPHLPSPHPTRPPSRPPSRPQS-VSRPPSEPPLHP 821
Query: 297 CNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQER 356
C P L +F+ +N L +P P P + P ++ +
Sbjct: 822 CPPPQAPPTLPGIFVIQNQ--------LGVPPPASNPAPT--------APGPPQPPLRPQ 865
Query: 357 SSSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKYASSPKPNNSYMFK 416
S P +P PP S + S+ S +SS LP +P P++ + +
Sbjct: 866 SQPPEGPLP-PAPHLPPSSTSSAVASS----------SETSSRLP----APTPSD-FQLQ 909
Query: 417 REPPEGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLM 476
P +G + P P + P F V P LP +
Sbjct: 910 FPPSQG----------PHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVTTPFPALPQPKAL 959
Query: 477 LKNSPNSGQSSALATLTVEQLSSRVSFTSLSDDTSTAGSMEASVQQPS 524
L+ L ++ + TSL TS A S+ S Q PS
Sbjct: 960 LERFHQVPSGIILQNKAGGAPAAPQTSTSLGPLTSPAASVLVSGQAPS 1007
Score = 31.2 bits (69), Expect = 2.6
Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 35/169 (20%)
Query: 4 ASSSSSSSSSQTPHPPSQRMRR--SAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLL 61
+SS+ +S+ PH P++ + R A GSP A S + + A + A
Sbjct: 1228 SSSAPGASTQPPPHLPTKLVIRHGGAGGSPSVTWARASSSLSSSSSSSSAASSLDADE-- 1285
Query: 62 QPIRATVPYQLLRGSQHSPTRPPVAA--AAASLG-----------SLPGPGAARGPSPSS 108
G S RPP+ A + +G S A P
Sbjct: 1286 ------------DGPMPSRNRPPIKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQP 1333
Query: 109 PTPPAAAAPAEQAPRAKGRPRRSPE-----SHRRSSSPERRSPG-SPVC 151
P PPA AE PR P + + H ++PER+ G +P C
Sbjct: 1334 PPPPATLKVAEPPPRPPPPPPPTGQMNGTVDHPPPAAPERKPLGTAPHC 1382
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 48.9 bits (115), Expect = 1e-05
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR----- 59
+S S S + PP RR AA + A AAAG G + CAP G+
Sbjct: 329 ASPFSVESLLSDSPP----RRKAASNAAAAAAAGLDFAPG----LPCAPRTLIGKGHFLL 380
Query: 60 --LLQPIRATVPYQLLRG----------SQHSPTRPPVAAAAASLGSLPGPGAARGPSPS 107
+ QP+ VP L+G + +P PP A AS G+ GPG A + +
Sbjct: 381 YPITQPLGFLVPQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFA 440
Query: 108 SPTPPAAAAPAEQAP 122
+P A A+P AP
Sbjct: 441 RRSPDAVASPGAPAP 455
Score = 38.1 bits (87), Expect = 0.021
Identities = 46/155 (29%), Positives = 53/155 (34%), Gaps = 31/155 (20%)
Query: 4 ASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQP 63
+S S S +P PP PP AA G G A G G AP P
Sbjct: 232 SSDSDSGGGGLSPEPPE----------PPPPAAKGPGAHASGAAGTAPAP---------P 272
Query: 64 IRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPR 123
P G+ P + A G P PG +S P AA A E+
Sbjct: 273 GEPPAP-----GTCDPAFYPSQRSGA---GPQPRPGRPADKDAASCGPGAAVAAVERG-- 322
Query: 124 AKGRPRRSPESHRR--SSSPERRSPGSPVCRADKA 156
A G P+ SP S S SP RR S A A
Sbjct: 323 AAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAA 357
Score = 38.1 bits (87), Expect = 0.021
Identities = 38/111 (34%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 4 ASSSSSSSSSQTPHPPSQRMRRS--AAGSPPAVAAAGS------GNGAGGGGGVGCAPAA 55
A +S + S P S RRS A SP A A A + A GGG CA A
Sbjct: 421 AQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAG 480
Query: 56 GAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSP 106
AG P S RPP A + +P PGAA GPSP
Sbjct: 481 TAGPAPPPPAP---------SPRPGPRPPSPAEEPATCGVPEPGAAAGPSP 522
Score = 30.8 bits (68), Expect = 3.3
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 20/92 (21%)
Query: 78 HSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSP----- 132
HSP + +A +S G G + P P P PPAA P A A G P
Sbjct: 220 HSPGGLSLHSAPSSDSDSGGGGLS--PEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPA 277
Query: 133 ---------ESHRRSSSPERRSPGSPVCRADK 155
S R + P+ R PG P ADK
Sbjct: 278 PGTCDPAFYPSQRSGAGPQPR-PGRP---ADK 305
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 48.5 bits (114), Expect = 2e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 3 TASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGG----GGVGCAPAAGAG 58
T+S S++ ++R + A +PP A G G+ G G +G AA A
Sbjct: 8 TSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAAN 67
Query: 59 RLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPA 118
L L G+ +P P ++GS AA GP S PPAA+A A
Sbjct: 68 ELNN--------NLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASA 119
Query: 119 EQAP-RAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTI 167
P R + P PE + S R+ G + +K K ++ R S+ +
Sbjct: 120 APPPQRDEEEPDGVPEKGKSSGPSARKGKG----QIEKRKLREKRRSTGV 165
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 48.5 bits (114), Expect = 2e-05
Identities = 72/314 (22%), Positives = 99/314 (31%), Gaps = 45/314 (14%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPI 64
+S +SQ H P R A G G G+G GGGGG A AGAG
Sbjct: 227 NSHEGYPNSQCNHYPGYS-RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG------ 279
Query: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRA 124
VAAAAA+ + G G G SS A +PR
Sbjct: 280 -------------------AVAAAAAAAAAAAGGGGGGGYGGSS-----AGYGVLSSPRQ 315
Query: 125 KGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQ 184
+G ++S + + GS + Q S + L T P +
Sbjct: 316 QGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSY 375
Query: 185 WPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRS 244
P PS +Q S A GA Q +A G + Q A +
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAA 435
Query: 245 KQSSRHSKEKDRQSPLHG-------NHITISHTQATGSRSVP--MPLSNISVPKSSV--- 292
+Q S + P G + + + Q G S P P + P S
Sbjct: 436 QQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Query: 293 --SRVPCNVEGISP 304
R P ++G +P
Sbjct: 496 GPQRYPIGIQGRTP 509
Score = 41.2 bits (95), Expect = 0.002
Identities = 88/396 (22%), Positives = 136/396 (34%), Gaps = 39/396 (9%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAV----AAAGSGNGAGGGGGVGCAP---A 54
S S SS P PP + + AA + A AAAG G G G A A
Sbjct: 374 SYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWA 433
Query: 55 AGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAA 114
A R + P + SQ SP P V G P + P SSP P +
Sbjct: 434 AAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQ--PQQSSPYPGGS 491
Query: 115 AAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLD 174
P G R+P + P+++ G + T +
Sbjct: 492 YGPPGPQRYPIGIQGRTPGAMAGMQYPQQQDSGDATWK---------ETFWLMPPQYGQQ 542
Query: 175 TITGPYLTGQWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQI 234
++G GQ P P + +A PS +++ + + +G+ Q
Sbjct: 543 GVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPS-QSQQRYQPQQDMSQEGYGTRSQPPLAP 601
Query: 235 AKLRQQLQRSKQSSRHSKEKDRQSPLH----GNHITIS-------HTQATGSRSVP--MP 281
K + Q R S D + G T+S T + G +S P P
Sbjct: 602 GKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSP 661
Query: 282 LSNISVPKSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRS- 340
S + P +S +P G SP + N + P IP + P P +S
Sbjct: 662 FSPHASP--HLSSIP---GGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSE 716
Query: 341 SSTRSIDTQTPSVQERS-SSCSSHSPCVSPFCPPES 375
SS+ +Q+P QER + + +P ++ + P ++
Sbjct: 717 SSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQT 752
Score = 31.2 bits (69), Expect = 2.6
Identities = 47/172 (27%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 5 SSSSSSSSSQTPHPP-SQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCA---PAAGAGRL 60
SS S+SS T P SQ + PPA + S + +G G G+G + G G
Sbjct: 771 SSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGP- 829
Query: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
QP A VP + S RP ++ S PG GP P P E
Sbjct: 830 SQPCGA-VPLGRM-PSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEA 887
Query: 121 APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSS 172
A S +S R+ S P G + + SQ + SS++ T +
Sbjct: 888 AAAVMQAAANSAQS-RQGSFPGMNQSG--LMASSSPYSQPMNNSSSLMNTQA 936
Score = 29.3 bits (64), Expect = 9.7
Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 28/143 (19%)
Query: 41 NGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPT----RPPVAAAAASLGSLP 96
N G GG P G R + VP Q + P+ R P +++AS+ +
Sbjct: 1419 NRQGPGGPTQAPPYPGMNRTDDMM---VPDQRINHESQWPSHVSQRQPYMSSSASMQPIT 1475
Query: 97 GPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKA 156
P P PS TPP+ +AP SP S +RS SP + K
Sbjct: 1476 RP-----PQPSYQTPPSLPNHISRAP--------SPASFQRSLENRMSPSKSPFLPSMKM 1522
Query: 157 KSQQVRTSSTIRRTSSLDTITGP 179
+ + T +TGP
Sbjct: 1523 QK--------VMPTVPTSQVTGP 1537
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 48.5 bits (114), Expect = 2e-05
Identities = 72/314 (22%), Positives = 99/314 (31%), Gaps = 45/314 (14%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPI 64
+S +SQ H P R A G G G+G GGGGG A AGAG
Sbjct: 227 NSHEGYPNSQCNHYPGYS-RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG------ 279
Query: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRA 124
VAAAAA+ + G G G SS A +PR
Sbjct: 280 -------------------AVAAAAAAAAAAAGGGGGGGYGGSS-----AGYGVLSSPRQ 315
Query: 125 KGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQ 184
+G ++S + + GS + Q S + L T P +
Sbjct: 316 QGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSY 375
Query: 185 WPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRS 244
P PS +Q S A GA Q +A G + Q A +
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAA 435
Query: 245 KQSSRHSKEKDRQSPLHG-------NHITISHTQATGSRSVP--MPLSNISVPKSSV--- 292
+Q S + P G + + + Q G S P P + P S
Sbjct: 436 QQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Query: 293 --SRVPCNVEGISP 304
R P ++G +P
Sbjct: 496 GPQRYPIGIQGRTP 509
Score = 41.2 bits (95), Expect = 0.002
Identities = 88/389 (22%), Positives = 132/389 (33%), Gaps = 38/389 (9%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAV----AAAGSGNGAGGGGGVGCAP---A 54
S S SS P PP + + AA + A AAAG G G G A A
Sbjct: 374 SYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWA 433
Query: 55 AGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAA 114
A R + P + SQ SP P V G P + P SSP P +
Sbjct: 434 AAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQ--PQQSSPYPGGS 491
Query: 115 AAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLD 174
P G R+P + P+++ P + QQ +
Sbjct: 492 YGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ----------- 540
Query: 175 TITGPYLTGQWPRDPHV----HYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQL 230
PY + Q P+ PH+ Y + Q ++EG RS A +
Sbjct: 541 ----PYYS-QQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHED 595
Query: 231 KEQIAKLRQQLQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVP--MPLSNISVP 288
I + R S ++ L T + G +S P P S + P
Sbjct: 596 LNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASP 655
Query: 289 KSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRS-SSTRSID 347
+S +P G SP + N + P IP + P P +S SS+
Sbjct: 656 --HLSSIP---GGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPAL 710
Query: 348 TQTPSVQERS-SSCSSHSPCVSPFCPPES 375
+Q+P QER + + +P ++ + P ++
Sbjct: 711 SQSPMPQERGFMAGTQRNPQMAQYGPQQT 739
Score = 34.7 bits (78), Expect = 0.23
Identities = 68/292 (23%), Positives = 99/292 (33%), Gaps = 48/292 (16%)
Query: 5 SSSSSSSSSQTPHPP-SQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQP 63
SS S+SS T P SQ + PPA + S + +G G G+G
Sbjct: 758 SSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMG------------- 804
Query: 64 IRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPR 123
+ +Q P A LG +P G P P + + ++P
Sbjct: 805 --------ISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 856
Query: 124 AKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTG 183
G P +R++ + + V +A +Q + S S L + PY
Sbjct: 857 GPGMGPPMPTVNRKA-----QEAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPY--- 908
Query: 184 QWPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQR 243
P + S M TQ P A + +AS G AD + +KL L+
Sbjct: 909 ---SQPMNNSSSLMN---TQAP---PYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKA 959
Query: 244 SKQS----SRHSKEKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSS 291
+ SK KD S IS G+ VP P+S S SS
Sbjct: 960 DGKEEGTPQPESKSKDSYSSQ-----GISQPPTPGNLPVPSPMSPSSASISS 1006
Score = 29.3 bits (64), Expect = 9.7
Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 28/143 (19%)
Query: 41 NGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPT----RPPVAAAAASLGSLP 96
N G GG P G R + VP Q + P+ R P +++AS+ +
Sbjct: 1459 NRQGPGGPTQAPPYPGMNRTDDMM---VPDQRINHESQWPSHVSQRQPYMSSSASMQPIT 1515
Query: 97 GPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKA 156
P P PS TPP+ +AP SP S +RS SP + K
Sbjct: 1516 RP-----PQPSYQTPPSLPNHISRAP--------SPASFQRSLENRMSPSKSPFLPSMKM 1562
Query: 157 KSQQVRTSSTIRRTSSLDTITGP 179
+ + T +TGP
Sbjct: 1563 QK--------VMPTVPTSQVTGP 1577
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 48.5 bits (114), Expect = 2e-05
Identities = 72/314 (22%), Positives = 99/314 (31%), Gaps = 45/314 (14%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPI 64
+S +SQ H P R A G G G+G GGGGG A AGAG
Sbjct: 227 NSHEGYPNSQCNHYPGYS-RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG------ 279
Query: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRA 124
VAAAAA+ + G G G SS A +PR
Sbjct: 280 -------------------AVAAAAAAAAAAAGGGGGGGYGGSS-----AGYGVLSSPRQ 315
Query: 125 KGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQ 184
+G ++S + + GS + Q S + L T P +
Sbjct: 316 QGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSY 375
Query: 185 WPRDPHVHYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRS 244
P PS +Q S A GA Q +A G + Q A +
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAA 435
Query: 245 KQSSRHSKEKDRQSPLHG-------NHITISHTQATGSRSVP--MPLSNISVPKSSV--- 292
+Q S + P G + + + Q G S P P + P S
Sbjct: 436 QQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Query: 293 --SRVPCNVEGISP 304
R P ++G +P
Sbjct: 496 GPQRYPIGIQGRTP 509
Score = 41.2 bits (95), Expect = 0.002
Identities = 88/389 (22%), Positives = 132/389 (33%), Gaps = 38/389 (9%)
Query: 2 STASSSSSSSSSQTPHPPSQRMRRSAAGSPPAV----AAAGSGNGAGGGGGVGCAP---A 54
S S SS P PP + + AA + A AAAG G G G A A
Sbjct: 374 SYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWA 433
Query: 55 AGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAA 114
A R + P + SQ SP P V G P + P SSP P +
Sbjct: 434 AAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQ--PQQSSPYPGGS 491
Query: 115 AAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLD 174
P G R+P + P+++ P + QQ +
Sbjct: 492 YGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ----------- 540
Query: 175 TITGPYLTGQWPRDPHV----HYPSCMKDKATQTPSCWAEEGAEKRSHQRSASWGSADQL 230
PY + Q P+ PH+ Y + Q ++EG RS A +
Sbjct: 541 ----PYYS-QQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHED 595
Query: 231 KEQIAKLRQQLQRSKQSSRHSKEKDRQSPLHGNHITISHTQATGSRSVP--MPLSNISVP 288
I + R S ++ L T + G +S P P S + P
Sbjct: 596 LNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASP 655
Query: 289 KSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRS-SSTRSID 347
+S +P G SP + N + P IP + P P +S SS+
Sbjct: 656 --HLSSIP---GGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPAL 710
Query: 348 TQTPSVQERS-SSCSSHSPCVSPFCPPES 375
+Q+P QER + + +P ++ + P ++
Sbjct: 711 SQSPMPQERGFMAGTQRNPQMAQYGPQQT 739
Score = 31.2 bits (69), Expect = 2.6
Identities = 47/172 (27%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 5 SSSSSSSSSQTPHPP-SQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCA---PAAGAGRL 60
SS S+SS T P SQ + PPA + S + +G G G+G + G G
Sbjct: 758 SSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGP- 816
Query: 61 LQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQ 120
QP A VP + S RP ++ S PG GP P P E
Sbjct: 817 SQPCGA-VPLGRM-PSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEA 874
Query: 121 APRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSS 172
A S +S R+ S P G + + SQ + SS++ T +
Sbjct: 875 AAAVMQAAANSAQS-RQGSFPGMNQSG--LMASSSPYSQPMNNSSSLMNTQA 923
Score = 29.3 bits (64), Expect = 9.7
Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 28/143 (19%)
Query: 41 NGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPT----RPPVAAAAASLGSLP 96
N G GG P G R + VP Q + P+ R P +++AS+ +
Sbjct: 1406 NRQGPGGPTQAPPYPGMNRTDDMM---VPDQRINHESQWPSHVSQRQPYMSSSASMQPIT 1462
Query: 97 GPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKA 156
P P PS TPP+ +AP SP S +RS SP + K
Sbjct: 1463 RP-----PQPSYQTPPSLPNHISRAP--------SPASFQRSLENRMSPSKSPFLPSMKM 1509
Query: 157 KSQQVRTSSTIRRTSSLDTITGP 179
+ + T +TGP
Sbjct: 1510 QK--------VMPTVPTSQVTGP 1524
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 31 PPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAA 90
PP+V+A G G G G G G G PA P + P+ P PP +
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPA--------PPNYSRPH-----GMGGPNMPPPGPSGV 268
Query: 91 SLGSLPG--PGAARGPSPSSPTPPAAAAPAEQ----APRAKGRPRRSPESHRRSSS---- 140
G +PG PG P P P AAA + P+ GRP +P + ++S
Sbjct: 269 PPG-MPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327
Query: 141 PERRSPGSPVCRADKAKSQQVRTSST-IRRTSSLDTI 176
P+ +SPG P A Q ++ T I++ LD +
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT---PPAAAAPAEQAPRAKGRPRRSPE 133
Q PT PP + +A G PGPG GP P+ P P P P G P P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP- 273
Query: 134 SHRRSSSPERRSPGSPVCRA 153
+ P + P P+ A
Sbjct: 274 -GQPPGGPPKPWPEGPMANA 292
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 17 HPPSQRMRRSAAGSPPAV-AAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQLLRG 75
H P + M P G G +GG G+G P+ P+
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS--------PM----------- 113
Query: 76 SQHSPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPE 133
QHS P P+ + + +P G + GP SS AP + A P+A G+ R P
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPT 170
Query: 134 SHRRSSSPERRS 145
++ + R+
Sbjct: 171 PFNQNQLHQLRA 182
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.8 bits (112), Expect = 3e-05
Identities = 43/135 (31%), Positives = 52/135 (38%), Gaps = 21/135 (15%)
Query: 28 AGSPPAVAAAGSGNGAGGGGGVGCAPAAGAG-----------RLLQPIRATVPYQLL--R 74
AG A AG G G G G G G P AG LL A P L
Sbjct: 161 AGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNN 220
Query: 75 GSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPES 134
G P AA + + P GAA P+P++P+PPAA APA P +P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPA--------APAAAPPP 272
Query: 135 HRRSSSPERRSPGSP 149
+ + R PG P
Sbjct: 273 PPPAPATLARPPGHP 287
Score = 47.4 bits (111), Expect = 3e-05
Identities = 37/103 (35%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 14 QTPHPPSQRMRRSAAG-SPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPIRATVPYQL 72
Q P PPS R AG +PPA G+ G CAP A + A P
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS----CAPVPAAAAV-----AAGPEPA 153
Query: 73 LRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAA 115
G P P AA A G PGPG GP P P P AA
Sbjct: 154 PAGPA-KPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAA 195
Score = 46.2 bits (108), Expect = 8e-05
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 18 PPSQRMRRSAAGSPPAVAAAGSG----NGAGGGGGVGCAPAAG--AGRLLQPIRATVPY- 70
PP+ +AG+ PA A A G +G G G APA G A + ++A P
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA 358
Query: 71 QLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPT--PPAAAAPAEQAPRAKGRP 128
Q L S + T + G+LP P A P+P +PT P AA Q+ P
Sbjct: 359 QTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQS--LSRTP 416
Query: 129 RRSPESHRRSSSPERRSPGSP 149
+ R + +P +P P
Sbjct: 417 TATTSGIRATLTPTVLAPRLP 437
Score = 40.8 bits (94), Expect = 0.003
Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 5 SSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQPI 64
S S + ++ P P++ +A PPA G GGGG R L P
Sbjct: 64 SGSPAGAAGAGPAAPAEGAPGAAPEPPPA------GRARPGGGGPQRPGPPSPRRPLVPA 117
Query: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGA-ARGPSPSSPTPPAAAAPAEQAPR 123
P LR PP +A S +P A A GP P+ P A PA A R
Sbjct: 118 GPAPPAAKLR--------PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAAR 169
Query: 124 AKGRPRRSP 132
A P P
Sbjct: 170 AGPGPGPGP 178
Score = 39.3 bits (90), Expect = 0.009
Identities = 43/143 (30%), Positives = 56/143 (39%), Gaps = 31/143 (21%)
Query: 1 MSTASSSSSSSSSQTPH--PPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAG 58
+ + S ++S++ H P + +R +AAG+ +GS GA G G APA GA
Sbjct: 26 VGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAG--PAAPAEGA- 82
Query: 59 RLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPA 118
+P PP A G PG PSP P PA AP
Sbjct: 83 -----------------PGAAPEPPPAGRARPGGGGPQRPGP---PSPRRPLVPAGPAP- 121
Query: 119 EQAPRAKGRPRRSPESHRRSSSP 141
P AK RP PE S +P
Sbjct: 122 ---PAAKLRP--PPEGSAGSCAP 139
Score = 37.0 bits (84), Expect = 0.047
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 59 RLLQPIRATVPYQLLRGSQH----SPTRPPV-AAAAASLGSLPGPGAARGPSPSSPTPPA 113
+++ + ++ QL + H +P P V AAAA +LG+ G+ G + + P
Sbjct: 20 KVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGP---- 75
Query: 114 AAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSP 149
AAPAE AP A P + + P+R P SP
Sbjct: 76 -AAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSP 110
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 47.8 bits (112), Expect = 3e-05
Identities = 68/274 (24%), Positives = 101/274 (36%), Gaps = 47/274 (17%)
Query: 40 GNGAGGGGGVGCAPAAGAG--------------------RLLQPIRATVPYQLLRGSQHS 79
G+G GGG G G AP+ G+G R+ QP+R P + +
Sbjct: 2301 GSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVRHHPPVLVSSAASSQ 2360
Query: 80 PTRPPVAAAAASLGSLPGPGAA--RGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRR 137
++ + SLP PGAA GPS S PP A A + + ES R+
Sbjct: 2361 AEADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRPPGADAEGSEREAEPIPKMKVLESPRK 2420
Query: 138 SSSPERRSPGSPVCRADKAKSQQVRTSSTIRRTSSLDTITGPYLTGQWPRDPHVHYPSCM 197
++ S SP A A++ R + + P + PS
Sbjct: 2421 GAA--NASGSSPDAPAKDARASLGTLPLGKPRAGAASPLNSPLSSAVPSLGKEPFPPSSP 2478
Query: 198 KDKATQTPSCWAEEGAEKRSHQRSASW-GSADQLKEQIAKLRQQLQRSKQSSRHS---KE 253
K S W+ A S S ++ G +D L+ +Q+ RH+ K+
Sbjct: 2479 LQKG---GSFWSSIPASPASRPGSFTFPGDSDSLQ-------------RQTPRHAAPGKD 2522
Query: 254 KDRQSPL-HGNHITISHTQATGSRSVPMPLSNIS 286
DR S + ++ TQ+ GS S SNIS
Sbjct: 2523 TDRMSTCSSASEQSVQSTQSNGSES--SSSSNIS 2554
Score = 34.7 bits (78), Expect = 0.23
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 27 AAGSPPAVAAAGSGNGAGGGGGVGCAPAA 55
AA S PA AA+ +G+G GGG G G AA
Sbjct: 12 AASSGPAAAASAAGSGCGGGAGEGAEEAA 40
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.123 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,832,378
Number of Sequences: 37866
Number of extensions: 1589991
Number of successful extensions: 26956
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 1693
Number of HSP's that attempted gapping in prelim test: 15194
Number of HSP's gapped (non-prelim): 9415
length of query: 547
length of database: 18,247,518
effective HSP length: 107
effective length of query: 440
effective length of database: 14,195,856
effective search space: 6246176640
effective search space used: 6246176640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.