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Search of human proteins with 54792133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54792133 hypothetical protein LOC25854 [Homo sapiens]
(482 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54792133 hypothetical protein LOC25854 [Homo sapiens] 978 0.0
gi|54792131 hypothetical protein LOC25854 [Homo sapiens] 978 0.0
gi|190886446 hypothetical protein LOC317662 [Homo sapiens] 120 4e-27
gi|239752523 PREDICTED: intestinal mucin-like, partial [Homo sap... 39 0.014
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 33 0.44
gi|239744421 PREDICTED: hypothetical protein [Homo sapiens] 33 0.58
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 33 0.75
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 33 0.75
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 32 1.3
gi|195963410 MEF2 activating motif and SAP domain containing tra... 32 1.3
gi|32698970 MEF2 activating motif and SAP domain containing tran... 32 1.3
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 32 1.7
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 1.7
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 1.7
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 31 2.2
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 31 2.2
gi|50345997 E1A binding protein p300 [Homo sapiens] 31 2.9
gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 2.9
gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 31 2.9
gi|157266300 membrane alanine aminopeptidase precursor [Homo sap... 31 2.9
gi|110611914 progesterone receptor [Homo sapiens] 30 3.7
gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Ho... 30 3.7
gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 30 3.7
gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 30 3.7
gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo sapi... 30 3.7
gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo sapi... 30 3.7
gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosi... 30 3.7
gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosi... 30 3.7
gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis... 30 3.7
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 30 4.9
>gi|54792133 hypothetical protein LOC25854 [Homo sapiens]
Length = 482
Score = 978 bits (2527), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL
Sbjct: 1 MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
Query: 61 SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY 120
SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY
Sbjct: 61 SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY 120
Query: 121 FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE 180
FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE
Sbjct: 121 FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE 180
Query: 181 LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN 240
LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN
Sbjct: 181 LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN 240
Query: 241 PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL 300
PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL
Sbjct: 241 PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL 300
Query: 301 GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV 360
GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV
Sbjct: 301 GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV 360
Query: 361 QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER
Sbjct: 361 QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV 480
LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV
Sbjct: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV 480
Query: 481 TS 482
TS
Sbjct: 481 TS 482
>gi|54792131 hypothetical protein LOC25854 [Homo sapiens]
Length = 482
Score = 978 bits (2527), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL
Sbjct: 1 MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
Query: 61 SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY 120
SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY
Sbjct: 61 SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEY 120
Query: 121 FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE 180
FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE
Sbjct: 121 FAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEE 180
Query: 181 LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN 240
LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN
Sbjct: 181 LIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLN 240
Query: 241 PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL 300
PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL
Sbjct: 241 PPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRL 300
Query: 301 GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV 360
GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV
Sbjct: 301 GRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLV 360
Query: 361 QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER
Sbjct: 361 QTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV 480
LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV
Sbjct: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQV 480
Query: 481 TS 482
TS
Sbjct: 481 TS 482
>gi|190886446 hypothetical protein LOC317662 [Homo sapiens]
Length = 582
Score = 120 bits (300), Expect = 4e-27
Identities = 125/477 (26%), Positives = 209/477 (43%), Gaps = 54/477 (11%)
Query: 1 MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
+L+E K++ T+SL EC +WT HLR+LGRQ+I P++ + + + SA + L
Sbjct: 114 LLYEQKLSVHTKSLQEECQQWTASFPHLRILGRQIITPSEGYRLYPRSPSAVSASYETTL 173
Query: 61 SACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEE----VYHVDGK 116
S R+ I G I L S+ + +A ++ S+E + + +G
Sbjct: 174 S------QERDSTIFG--IRGKKLHFSSSYAHKASSIAKSSSFCSMERDEEDSIIVSEGI 225
Query: 117 IEEYFAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVE 176
IEEY AFD D +E K ++ + +KLG PP++P C+K+ V A VFD VW +V
Sbjct: 226 IEEYLAFDHI-DIEEGFHGKKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDSVWCKVVS 284
Query: 177 LLEELIRKHW-------ETTLTEGKKQRETLKVAGNRFPHVL--VPHAHADGASGPPSGH 227
+E+L R HW E+ + + E+ V P VL VP + + P
Sbjct: 285 CMEQLTRSHWEGFASDDESNVAVTRPDSESSCVLSELHPLVLPRVPQSKVLYITSNPM-- 342
Query: 228 AEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASG 287
+ ASR P ++N ++ + PLQ R D+ + +
Sbjct: 343 ----SLCQASRHQP------------NVNDLL-VHGMPLQPRNLSLMDKLLDLDDKLLMR 385
Query: 288 GGAGALSSA---PHR---LGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDE 341
G+ + S P+R +S ++ + + ++ P P L +++ +TP +E
Sbjct: 386 PGSSTILSTRNWPNRAVEFSTSSLSYTVQSTRRRNPPPRTLHPISTSHSCAETPRSV-EE 444
Query: 342 VLRGTKLPTGVDHMASPLVQTSRSR---FPPLVTETRGQNTAVPGCRLVSYRGRHLQNRV 398
+LRG ++P D ++SP T SR PP+ T + V R + G +R
Sbjct: 445 ILRGARVPVAPDSLSSP-SPTPLSRNNLLPPIGTAEVEHVSTVGPQRQMKPHGD--SSRA 501
Query: 399 LSAMPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQS 455
SA+ D + +ER + RP+TT +F R+S + A G +
Sbjct: 502 QSAVVDEPNYQQPQERLLLPDFFPRPNTTQSFLLDTQYRRSCAVEYPHQARPGRGSA 558
>gi|239752523 PREDICTED: intestinal mucin-like, partial [Homo
sapiens]
Length = 514
Score = 38.5 bits (88), Expect = 0.014
Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 21/200 (10%)
Query: 293 LSSAPHRLGRASDTHGLSPSAKKTPVPWRLP------------SLASDSQRLKTPNIYSD 340
+SS P G + ++PS+ T +P P SL + + T + S
Sbjct: 212 ISSGPPTSGTIVTSITVTPSSLSTDIPLTTPTTITHHSVGSTESLLTATDLTSTFTVSSS 271
Query: 341 EVLRGTKLPTGVDHM---ASPLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNR 397
+ + +P+ S LV + + P + + + L ++ G + +
Sbjct: 272 SAMSTSDIPSSPSIQNTETSSLVSMTSATIPSVRPTFTSTHNTLTSSLLTTFPGTYSFSS 331
Query: 398 VLSAMPDGTERSR----LRERTATLERLSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTG 453
+SA DGT + L T+TL + +T HT S T + + A T TG
Sbjct: 332 SMSASSDGTTHTETITSLPASTSTLHTTAESTTAHTTTTSFTTSTTMESPSSSVATTSTG 391
Query: 454 QSILTGSQYVPKSFQRTTLT 473
Q+ T S + TTLT
Sbjct: 392 QT--TFSSSTATFTETTTLT 409
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 33.5 bits (75), Expect = 0.44
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 24 RSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPLS--ACGHSSNIRELCISGSQIVP 81
R LH +++ + ++ + G+Q F AS VH P S C +S+ + G++++P
Sbjct: 1570 RPLHKKLVDQFFVMKSSLGIQEFSACMQASPVHFPNGSPRVCRNSAP-ASVSPDGTRVIP 1628
Query: 82 A----------ALSASALPGPDDTGVADLTARSSLEEEVYHV 113
S+S+L V+++T +S +EV+++
Sbjct: 1629 RRSPLSYPAVNRYSSSSLSSQASAEVSNITGQSESSDEVFNM 1670
>gi|239744421 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 33.1 bits (74), Expect = 0.58
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 256 NGVMTIQAKPLQR----------RPAYFADRTQNEKEDKASGGGAGALSSA-PHRLGRAS 304
+G+ ++ +P QR +P + + + GGA A+S+ P +GR++
Sbjct: 21 DGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPRGVGRSA 80
Query: 305 DTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSR 364
P KK R + S+ ++ + L G + + S L SR
Sbjct: 81 R----DPQTKKPR--GRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
Query: 365 SRFPPLVTETRGQNTAVPGCRLVSYRGRHL--QNRVLSAMPDGTERSR 410
R P + + ++ PGC V+ R RH ++R A P G+ SR
Sbjct: 135 RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.7 bits (73), Expect = 0.75
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 310 SPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPP 369
SP++ +T +P L + + P S GTKL + + +++ SR P
Sbjct: 1363 SPASTQTGLPATLTTADLGEESTTFP---SSSGSTGTKLSPARSTTSGLVGESTPSRLSP 1419
Query: 370 LVTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
TET T +PG Y + LS P T S + E ++T
Sbjct: 1420 SSTET----TTLPGSPTTPSLSEKSTTFYTSPRSPDATLS--PATTTSSGVSEESSTSH- 1472
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILT 458
S+P +THT D+ S L+Q +H+ G + T
Sbjct: 1473 -SQPGSTHTTAFPDSTTTSDLSQEPTTSHSSQGSTEAT 1509
Score = 32.7 bits (73), Expect = 0.75
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 310 SPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPP 369
SP++ +T +P L + + P S GTKL + + +++ SR P
Sbjct: 4003 SPASTQTGLPATLTTADLGEESTTFP---SSSGSTGTKLSPARSTTSGLVGESTPSRLSP 4059
Query: 370 LVTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
TET T +PG Y + LS P T S + E ++T
Sbjct: 4060 SSTET----TTLPGSPTTPSLSEKSTTFYTSPRSPDATLS--PATTTSSGVSEESSTSH- 4112
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILT 458
S+P +THT D+ S L+Q +H+ G + T
Sbjct: 4113 -SQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEAT 4149
Score = 32.0 bits (71), Expect = 1.3
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 310 SPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPP 369
SP++ +T +P L + + P S GT L + + +++ SR P
Sbjct: 2920 SPASTQTGLPATLTTADLGEESTTFP---SSSGSTGTTLSPARSTTSGLVGESTPSRLSP 2976
Query: 370 LVTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
TET T +PG Y + LS P T S + E ++T
Sbjct: 2977 SSTET----TTLPGSPTTPSLSEKSTTFYTSPRSPDATLS--PATTTSSGVSEESSTSH- 3029
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILT 458
S+P +THT D+ S L+Q A+H+ G + T
Sbjct: 3030 -SQPGSTHTTAFPDSTTTSGLSQEPTASHSSQGSTEAT 3066
Score = 31.2 bits (69), Expect = 2.2
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 371 VTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLERL 421
+T + TA+PG + Y +R LS P T S + E++ T
Sbjct: 257 ITSASMETTALPGSTTTAGLSEKSTTFYSSPRSPDRTLS--PARTTSSGVSEKSTTSH-- 312
Query: 422 SRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTG--QSILTGSQYVPKSFQRTTLTF 474
SRP THT D+ ++Q A+H+ G + L+ P S + TF
Sbjct: 313 SRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSLGPESTTF 367
Score = 29.6 bits (65), Expect = 6.4
Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 25/254 (9%)
Query: 220 ASGPPSGHAE----AHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFAD 275
AS GH+E H +A+ PP +S + P + +F +
Sbjct: 462 ASSTTLGHSEESTPVHSSPVATATTPPPARSATSGHVEESTAY---HRSPGSTQTMHFPE 518
Query: 276 R--TQNEKEDKAS--GGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQR 331
T E+ A+ G SS P + T S +R S S
Sbjct: 519 SSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISGRSE 578
Query: 332 LKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRL---VS 388
+ S + + T LP G ++P V S P+ + + + TA+PG +S
Sbjct: 579 ESKASHSSPDAMATTVLPAG----STPSVLVGDSTPSPISSGSM-ETTALPGSTTKPGLS 633
Query: 389 YRGRHLQNRVLSA----MPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSSLTQM 444
+ + S +P S + E + T SRP +THT + L+Q
Sbjct: 634 EKSTTFYSSPRSPDTTHLPASMTSSGVSEESTTSH--SRPGSTHTTAFPGSTTMPGLSQE 691
Query: 445 EFAAHTWTGQSILT 458
A+H+ G + T
Sbjct: 692 STASHSSPGPTDTT 705
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 32.7 bits (73), Expect = 0.75
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 310 SPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPP 369
SP++ +T +P L + + P S GTKL + + +++ SR P
Sbjct: 850 SPASTQTGLPATLTTADLGEESTTFP---SSSGSTGTKLSPARSTTSGLVGESTPSRLSP 906
Query: 370 LVTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLER 420
TET T +PG Y + LS P T S + E ++T
Sbjct: 907 SSTET----TTLPGSPTTPSLSEKSTTFYTSPRSPDATLS--PATTTSSGVSEESSTSH- 959
Query: 421 LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILT 458
S+P +THT D+ S L+Q +H+ G + T
Sbjct: 960 -SQPGSTHTTAFPDSTTTSDLSQEPTTSHSSQGSTEAT 996
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 49 STPASAVHRPPLSACGHSSNIRELCISGSQIVPAALSASALPGPDD--TGVADLTARS 104
++P+ + HR S + +L + GSQI AL S+ PGP D TG+ +T+ S
Sbjct: 1520 TSPSYSQHR------AKSGSFYQLALLGSQIPEEALRVSSAPGPADQTTGIPTITSTS 1571
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 32.0 bits (71), Expect = 1.3
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 294 SSAPHR--LGRASDTHGLSPSAKKTPVPWRLPSLASD----SQRLKTPNIYSDEVLRGTK 347
S+A HR L RA+DT G +P+ TP P P+L S L + + R
Sbjct: 245 SAASHRPPLPRAADTPGTAPAPTPTPAPAAAPALTPSSGPGSAALTLEEELQEAIRRAQL 304
Query: 348 LPT-GVDHMASPLVQTSRSRFPPLVTETRG 376
LP G+D + V+ PP+ + G
Sbjct: 305 LPNRGIDDILEDQVEPD-DPLPPIPLDFPG 333
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 32.0 bits (71), Expect = 1.3
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 294 SSAPHR--LGRASDTHGLSPSAKKTPVPWRLPSLASD----SQRLKTPNIYSDEVLRGTK 347
S+A HR L RA+DT G +P+ TP P P+L S L + + R
Sbjct: 142 SAASHRPPLPRAADTPGTAPAPTPTPAPAAAPALTPSSGPGSAALTLEEELQEAIRRAQL 201
Query: 348 LPT-GVDHMASPLVQTSRSRFPPLVTETRG 376
LP G+D + V+ PP+ + G
Sbjct: 202 LPNRGIDDILEDQVEPD-DPLPPIPLDFPG 230
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 31.6 bits (70), Expect = 1.7
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 22/201 (10%)
Query: 265 PLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPS 324
P +P +RT + + S A S HR RA+ + ++P+ + + +
Sbjct: 1099 PSLAKPTEHGERTTSPNDKITSS----AAESTEHR-DRATSANVITPAPAEPIKHAKRTT 1153
Query: 325 LASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTE----TRGQNTA 380
LA + T + T+ P +T P L +E T+G+NT
Sbjct: 1154 LAHEKMTQVTE--------KSTEHPEKTTSTTEKTTRTPEK--PTLYSEKTICTKGKNTP 1203
Query: 381 VPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSS 440
VP + L + A TE E+TA + + +PS T +S T S
Sbjct: 1204 VPEKPTENLGNTTLTTETIKAPVKSTENP---EKTAAVTKTIKPSVKVTGDKSLTTTSSH 1260
Query: 441 LTQMEFAAHTWTGQSILTGSQ 461
L + E TG L S+
Sbjct: 1261 LNKTEVTHQVPTGSFTLITSR 1281
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.6 bits (70), Expect = 1.7
Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 22/223 (9%)
Query: 208 PHVLVPHAHADGASGPPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQ 267
P ++P + A H+ AHG AS + + +S SF D + ++
Sbjct: 554 PGAVLPRSAATCGRPVADMHSAAHGSGEASAMQ--SLIKYSGSFARD---AVAVRPGGCG 608
Query: 268 RRPAYFADRTQNEKEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKTPVP-------W 320
++ + T + S G + A + PH G A+ G K+ P
Sbjct: 609 KKSPFGGLGTMKPEPAPTSAGASRAQARLPHSGGPAA---GGGRQLKRDPERPESAKAFG 665
Query: 321 RLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTA 380
R S A ++ P + + K G + LV RS ++ +G A
Sbjct: 666 REGSGAQGEAEVRHPPVGIAVAVARQKDSGGSGRLGPGLVDQERSLS---LSNVKGHGRA 722
Query: 381 VPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRE--RTATLERL 421
C V R RH + R+L A D + LRE A L RL
Sbjct: 723 DEDC--VDDRARHREERLLGARLDRDQEKLLRESKELADLARL 763
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 31.6 bits (70), Expect = 1.7
Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 40/256 (15%)
Query: 208 PHVLVPHAHADGASGPPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQ----- 262
P + H+ + GH +HG S + H + + +Q
Sbjct: 4870 PTIEKSHSSPGSSKSSSEGHLRSHGPSRSQSKTSVTQTHLEDAGAAIAAAEAAVQQLRIQ 4929
Query: 263 -AKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKT---PV 318
KP RPA E S G +G+ + G + D+ G S +A +T P+
Sbjct: 4930 PTKPPNHRPA----------ESSVSTGSSGSSFGS----GYSVDSEGSSSTAGETNLFPI 4975
Query: 319 PWRLPSLASDSQR-LKTPNIYSDEVLRGTKLPTGV-DHMASPLVQTSRSRFPPLVTETRG 376
P R+ + + Q +K P + L T+ T V + L + ++ L+ E
Sbjct: 4976 P-RIGKMGQNGQEPVKQPGVGVG--LADTEAKTQVMGEIKIALKKEMKTDGEQLIVE--- 5029
Query: 377 QNTAVPGCRLVSYRGR---HLQNRVLS--AMPDGTERSRLRERTATLERLSRPSTTHTFR 431
+ CR ++Y+ + HL + + M T++ ++++T PS TFR
Sbjct: 5030 ----ILQCRNITYKFKSPDHLPDLYVKIYVMNISTQKKVIKKKTRVCRHDREPSFNETFR 5085
Query: 432 QSDTPRKSSLTQMEFA 447
S +P SL + F+
Sbjct: 5086 FSLSPAGHSLQILLFS 5101
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 31.2 bits (69), Expect = 2.2
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 371 VTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLERL 421
+T + TA+PG + Y +R LS P T S + E++ T
Sbjct: 178 ITSASMETTALPGSTTTAGLSEKSTTFYSSPRSPDRTLS--PARTTSSGVSEKSTTSH-- 233
Query: 422 SRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTG--QSILTGSQYVPKSFQRTTLTF 474
SRP THT D+ ++Q A+H+ G + L+ P S + TF
Sbjct: 234 SRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSLGPESTTF 288
Score = 29.6 bits (65), Expect = 6.4
Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 25/254 (9%)
Query: 220 ASGPPSGHAE----AHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFAD 275
AS GH+E H +A+ PP +S + P + +F +
Sbjct: 383 ASSTTLGHSEESTPVHSSPVATATTPPPARSATSGHVEESTAY---HRSPGSTQTMHFPE 439
Query: 276 R--TQNEKEDKAS--GGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQR 331
T E+ A+ G SS P + T S +R S S
Sbjct: 440 SSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISGRSE 499
Query: 332 LKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRL---VS 388
+ S + + T LP G ++P V S P+ + + + TA+PG +S
Sbjct: 500 ESKASHSSPDAMATTVLPAG----STPSVLVGDSTPSPISSGSM-ETTALPGSTTKPGLS 554
Query: 389 YRGRHLQNRVLSA----MPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSSLTQM 444
+ + S +P S + E + T SRP +THT + L+Q
Sbjct: 555 EKSTTFYSSPRSPDTTHLPASMTSSGVSEESTTSH--SRPGSTHTTAFPGSTTMPGLSQE 612
Query: 445 EFAAHTWTGQSILT 458
A+H+ G + T
Sbjct: 613 STASHSSPGPTDTT 626
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 31.2 bits (69), Expect = 2.2
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 371 VTETRGQNTAVPGCRLVS---------YRGRHLQNRVLSAMPDGTERSRLRERTATLERL 421
+T + TA+PG + Y +R LS P T S + E++ T
Sbjct: 113 ITSASMETTALPGSTTTAGLSEKSTTFYSSPRSPDRTLS--PARTTSSGVSEKSTTSH-- 168
Query: 422 SRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTG--QSILTGSQYVPKSFQRTTLTF 474
SRP THT D+ ++Q A+H+ G + L+ P S + TF
Sbjct: 169 SRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSLGPESTTF 223
Score = 29.6 bits (65), Expect = 6.4
Identities = 53/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%)
Query: 220 ASGPPSGHAE----AHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFAD 275
AS GH+E H +A+ PP +S + P + +F +
Sbjct: 318 ASSTTLGHSEESTPVHSSPVATATTPPPARSATSGHVEESTAY---HRSPGSTQTMHFPE 374
Query: 276 R--TQNEKEDKAS--GGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQR 331
T E+ A+ G SS P + T S +R S S
Sbjct: 375 SSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISGRSE 434
Query: 332 LKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRG 391
+ S + + T LP G ++P V S P+ + + + TA+PG + G
Sbjct: 435 ESKASHSSPDAMATTVLPAG----STPSVLVGDSTPSPISSGSM-ETTALPGS--TTKPG 487
Query: 392 RHLQNRVLSAMPDGTERSRLRERTAT-------LERLSRPSTTHTFRQSDTPRKSSLTQM 444
++ + P + + L R + SRP +THT + L+Q
Sbjct: 488 LSEKSTTFYSSPRSPDTTHLPARMTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQE 547
Query: 445 EFAAHTWTGQSILT 458
A+H+ G + T
Sbjct: 548 STASHSSPGPTDTT 561
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 196 QRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLNP-PQIHHFSSSFYSD 254
Q ++ + G + P+ L + P ++ S + R+ P P HH S S
Sbjct: 2288 QAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHHVSPQTSSP 2347
Query: 255 MNGVMTIQAKPLQRRPAYFADRTQNEK-EDKASGGGAGALSSAPHR-LGRASDTHGLSPS 312
G++ QA P+++ +FA QN AS G L A LG ++D L+ +
Sbjct: 2348 HPGLVAAQANPMEQ--GHFASPDQNSMLSQLASNPGMANLHGASATDLGLSTDNSDLNSN 2405
Query: 313 AKKT 316
++
Sbjct: 2406 LSQS 2409
>gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 629
Score = 30.8 bits (68), Expect = 2.9
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 137 PAQPGRKWR-KLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEELIRKHWETTLTEGKK 195
P QP R+ K LPP P+ + V E+ V V+++EEL+ T E +K
Sbjct: 482 PPQPHRRAETKARLPPPRPQRPAETKVPEEIPPEVVQEYVDIMEELLGPSLGAT-GEPEK 540
Query: 196 QRETLKV 202
QRE KV
Sbjct: 541 QREEGKV 547
>gi|239744140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 878
Score = 30.8 bits (68), Expect = 2.9
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 137 PAQPGRKWR-KLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEELIRKHWETTLTEGKK 195
P QP R+ K LPP P+ + V E+ V V+++EEL+ T E +K
Sbjct: 482 PPQPHRRAETKARLPPPRPQRPAETKVPEEIPPEVVQEYVDIMEELLGPSLGAT-GEPEK 540
Query: 196 QRETLKV 202
QRE KV
Sbjct: 541 QREEGKV 547
>gi|157266300 membrane alanine aminopeptidase precursor [Homo
sapiens]
Length = 967
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 8 NPQTQSLLAECGEWTRRSL-------HLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPL 60
NP + + L + W R L RV R + P D+G+ F+GS+ +
Sbjct: 58 NPASATTLDQSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEAT 117
Query: 61 SA-CGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLT-------ARSSLEEEVYH 112
HS + G ++V + S P D T + + T S +++ Y
Sbjct: 118 DVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYE 177
Query: 113 VDGKIEEYFAFD 124
+D + E A D
Sbjct: 178 MDSEFEGELADD 189
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 30.4 bits (67), Expect = 3.7
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 26/125 (20%)
Query: 208 PHVLVPHAHADGASGPPSGHAEAHGISLA----SRLNPPQIHHFS---------SSFYSD 254
P L A GA+ P G A A G++L SR + P++ S +
Sbjct: 241 PRALGGAAAGGGAAAVPPG-AAAGGVALVPKEDSRFSAPRVALVEQDAPMAPGRSPLATT 299
Query: 255 MNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSS-APHRLGRASDTHGLSPSA 313
+ + + PL A A RT+ ED++ GGAGA S+ AP R SP A
Sbjct: 300 VMDFIHVPILPLNH--ALLAARTRQLLEDESYDGGAGAASAFAPPR---------SSPCA 348
Query: 314 KKTPV 318
TPV
Sbjct: 349 SSTPV 353
>gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Homo
sapiens]
Length = 358
Score = 30.4 bits (67), Expect = 3.7
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 11/186 (5%)
Query: 240 NPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHR 299
+P Q + ++ + ++ + +R+ + + E+ED SG AL R
Sbjct: 155 DPNQPAKIETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRER-QR 213
Query: 300 LGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMAS-- 357
+ T L K + LP R KT ++ D T L G +S
Sbjct: 214 EELSKVTSNLGKMILKEEMEKSLPI------RRKTRSL-PDRTPFHTSLHQGTSKSSSLP 266
Query: 358 PLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTAT 417
+T+ SR G T PG ++ Y + N+ + +P G +R RL ER +
Sbjct: 267 AYGRTTLSRLQSTEFSPSGSETGSPGLQIYPYEMLVVTNKGRTKLPPGVDRMRL-ERHLS 325
Query: 418 LERLSR 423
E SR
Sbjct: 326 AEDFSR 331
>gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 30.4 bits (67), Expect = 3.7
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 11/186 (5%)
Query: 240 NPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHR 299
+P Q + ++ + ++ + +R+ + + E+ED SG AL R
Sbjct: 180 DPNQPAKIETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRER-QR 238
Query: 300 LGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMAS-- 357
+ T L K + LP R KT ++ D T L G +S
Sbjct: 239 EELSKVTSNLGKMILKEEMEKSLPI------RRKTRSL-PDRTPFHTSLHQGTSKSSSLP 291
Query: 358 PLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTAT 417
+T+ SR G T PG ++ Y + N+ + +P G +R RL ER +
Sbjct: 292 AYGRTTLSRLQSTEFSPSGSETGSPGLQIYPYEMLVVTNKGRTKLPPGVDRMRL-ERHLS 350
Query: 418 LERLSR 423
E SR
Sbjct: 351 AEDFSR 356
>gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 30.4 bits (67), Expect = 3.7
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 11/186 (5%)
Query: 240 NPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHR 299
+P Q + ++ + ++ + +R+ + + E+ED SG AL R
Sbjct: 180 DPNQPAKIETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRER-QR 238
Query: 300 LGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMAS-- 357
+ T L K + LP R KT ++ D T L G +S
Sbjct: 239 EELSKVTSNLGKMILKEEMEKSLPI------RRKTRSL-PDRTPFHTSLHQGTSKSSSLP 291
Query: 358 PLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTAT 417
+T+ SR G T PG ++ Y + N+ + +P G +R RL ER +
Sbjct: 292 AYGRTTLSRLQSTEFSPSGSETGSPGLQIYPYEMLVVTNKGRTKLPPGVDRMRL-ERHLS 350
Query: 418 LERLSR 423
E SR
Sbjct: 351 AEDFSR 356
>gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo
sapiens]
Length = 524
Score = 30.4 bits (67), Expect = 3.7
Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 34/187 (18%)
Query: 208 PHVLVPHAHADGASG-----PPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQ 262
PH+ P A A A G PSGH + G + ++H S D+N V +
Sbjct: 304 PHLKSPSAEATVAGGCLLPPSPSGHPDQTGTN--QHFVMVEVHRPDSE--PDVNEVRALP 359
Query: 263 AKPLQRRPAYFADRTQNEKEDKASGGGAG-ALSSAPHRLGRASDTHGLSPSAKKTPVPWR 321
++ +D Q ED SG AG A +SAP R ++ T S S+K+ P
Sbjct: 360 QTRTASTLSHLSDSGQTLSED--SGVDAGEAEASAPGRGRQSVSTK--SRSSKELP---- 411
Query: 322 LPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAV 381
++ G P G+ S LV+ +S + G NT
Sbjct: 412 ----------------RNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQ 455
Query: 382 PGCRLVS 388
P R+V+
Sbjct: 456 PLPRIVT 462
>gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo
sapiens]
Length = 907
Score = 30.4 bits (67), Expect = 3.7
Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 34/187 (18%)
Query: 208 PHVLVPHAHADGASG-----PPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQ 262
PH+ P A A A G PSGH + G + ++H S D+N V +
Sbjct: 687 PHLKSPSAEATVAGGCLLPPSPSGHPDQTGTN--QHFVMVEVHRPDSE--PDVNEVRALP 742
Query: 263 AKPLQRRPAYFADRTQNEKEDKASGGGAG-ALSSAPHRLGRASDTHGLSPSAKKTPVPWR 321
++ +D Q ED SG AG A +SAP R ++ T S S+K+ P
Sbjct: 743 QTRTASTLSHLSDSGQTLSED--SGVDAGEAEASAPGRGRQSVSTK--SRSSKELP---- 794
Query: 322 LPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAV 381
++ G P G+ S LV+ +S + G NT
Sbjct: 795 ----------------RNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQ 838
Query: 382 PGCRLVS 388
P R+V+
Sbjct: 839 PLPRIVT 845
>gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosis
1, RH-linked) isoform 1 [Homo sapiens]
Length = 775
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 252 YSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALS--------SAPH-RLGR 302
YS T QA L RPA +RT +++ ++ G A S SAP G+
Sbjct: 474 YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQ 533
Query: 303 ASDTHGLSPSAKKTPVP 319
++ L SAKKT VP
Sbjct: 534 VAEGGVLDASAKKTVVP 550
>gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosis
1, RH-linked) isoform 2 [Homo sapiens]
Length = 641
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 252 YSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALS--------SAPH-RLGR 302
YS T QA L RPA +RT +++ ++ G A S SAP G+
Sbjct: 300 YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQ 359
Query: 303 ASDTHGLSPSAKKTPVP 319
++ L SAKKT VP
Sbjct: 360 VAEGGVLDASAKKTVVP 376
>gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis 1,
RH-linked) isoform 3 [Homo sapiens]
Length = 588
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 252 YSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALS--------SAPH-RLGR 302
YS T QA L RPA +RT +++ ++ G A S SAP G+
Sbjct: 300 YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQ 359
Query: 303 ASDTHGLSPSAKKTPVP 319
++ L SAKKT VP
Sbjct: 360 VAEGGVLDASAKKTVVP 376
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 30.0 bits (66), Expect = 4.9
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 233 ISLASRLNPPQIHHFSSSFYSDM--NGVMTIQAKPLQ-RRPAYFADRTQNEKEDKASGG- 288
I + SRL PP + H S + V + + PL R P+ + RT+N E AS G
Sbjct: 3923 IGVQSRLLPPPLRHRSQRLGNSFVPEKVASPEHCPLSGREPSQWQSRTENGGESSASPGE 3982
Query: 289 ----------GAGALSSAPHRLGRASDTHGLSPSAKKTP 317
G +P + +DT GL SA P
Sbjct: 3983 PQRTLDRPSSWGGLQHLSPCPVSELTDTAGLRGSALGLP 4021
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,740,960
Number of Sequences: 37866
Number of extensions: 1020011
Number of successful extensions: 3511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 3441
Number of HSP's gapped (non-prelim): 149
length of query: 482
length of database: 18,247,518
effective HSP length: 106
effective length of query: 376
effective length of database: 14,233,722
effective search space: 5351879472
effective search space used: 5351879472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.