Guide to the Human Genome
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Name: FAM149A Sequence: fasta or formatted (482aa) NCBI GI: 54792131
Description:

hypothetical protein LOC25854

Not currently referenced in the text

Other entries for this name:
alt mRNA {482aa} hypothetical protein LOC25854
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         38           2
 C cysteine            1.2          6           1
 D aspartate           4.6         22           3
 E glutamate           5.8         28           3
 F phenylalanine       3.1         15           1
 G glycine             6.8         33           3
 H histidine           4.1         20           2
 I isoleucine          2.3         11           1
 K lysine              4.6         22           2
 L leucine             9.3         45           2
 M methionine          1.5          7           1
 N asparagine          2.1         10           1
 P proline             7.5         36           2
 Q glutamine           4.8         23           1
 R arginine            8.5         41           2
 S serine              9.8         47           3
 T threonine           7.7         37           2
 V valine              5.8         28           1
 W tryptophan          1.2          6           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC25854 
FAM149A               1.000   hypothetical protein LOC25854 
FAM149B1              0.100   hypothetical protein LOC317662 
LOC100133790          0.015   PREDICTED: intestinal mucin-like, partial 
DOCK4                 0.008   dedicator of cytokinesis 4 
LOC100127946          0.008   PREDICTED: hypothetical protein 
MUC12                 0.008   PREDICTED: mucin 12 
MUC12                 0.008   PREDICTED: mucin 12, cell surface associated 
ALMS1                 0.007   Alstrom syndrome 1 
MAMSTR                0.007   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.007   MEF2 activating motif and SAP domain containing tran...
DPCR1                 0.007   diffuse panbronchiolitis critical region 1 protein ...
TNRC18                0.007   trinucleotide repeat containing 18 
PCLO                  0.007   piccolo isoform 1 
MUC12                 0.006   PREDICTED: mucin 12 
LOC100133714          0.006   PREDICTED: similar to Mucin-12, partial 
EP300                 0.006   E1A binding protein p300 
FAM22E                0.006   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.006   PREDICTED: hypothetical protein 
ANPEP                 0.006   membrane alanine aminopeptidase precursor 
PGR                   0.005   progesterone receptor 
EPB49                 0.005   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
EPB49                 0.005   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.005   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
DFNB31                0.005   CASK-interacting protein CIP98 isoform 2 
DFNB31                0.005   CASK-interacting protein CIP98 isoform 1 
EPB41                 0.005   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.005   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.005   erythrocyte membrane protein band 4.1 (elliptocytosis...
STARD9                0.005   PREDICTED: StAR-related lipid transfer (START) doma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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