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Search of human proteins with 54607104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607104 hypothetical protein LOC56941 [Homo sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607104 hypothetical protein LOC56941 [Homo sapiens] 744 0.0
gi|54607106 hypothetical protein LOC56941 [Homo sapiens] 744 0.0
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 33 0.51
gi|40254924 leucine rich repeat containing 59 [Homo sapiens] 33 0.51
gi|34304322 mitochondrial ribosomal protein L45 [Homo sapiens] 32 0.86
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 31 1.5
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 30 2.5
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 30 4.3
gi|21614542 single-minded homolog 1 [Homo sapiens] 29 5.6
gi|21237768 MAP kinase-activated protein kinase 5 isoform 2 [Hom... 29 5.6
gi|21237765 MAP kinase-activated protein kinase 5 isoform 1 [Hom... 29 5.6
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ... 29 5.6
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ... 29 5.6
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 29 5.6
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 29 5.6
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens] 29 7.3
gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens] 29 7.3
gi|4502745 cyclin-dependent kinase 8 [Homo sapiens] 28 9.5
gi|13994190 frizzled 8 [Homo sapiens] 28 9.5
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 28 9.5
>gi|54607104 hypothetical protein LOC56941 [Homo sapiens]
Length = 354
Score = 744 bits (1920), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE 60
MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE
Sbjct: 1 MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE 60
Query: 61 KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV 120
KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV
Sbjct: 61 KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV 120
Query: 121 LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF 180
LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF
Sbjct: 121 LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF 180
Query: 181 DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL 240
DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL
Sbjct: 181 DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL 240
Query: 241 IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED 300
IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED
Sbjct: 241 IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED 300
Query: 301 SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ 354
SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ
Sbjct: 301 SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ 354
>gi|54607106 hypothetical protein LOC56941 [Homo sapiens]
Length = 354
Score = 744 bits (1920), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE 60
MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE
Sbjct: 1 MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFE 60
Query: 61 KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV 120
KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV
Sbjct: 61 KDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVV 120
Query: 121 LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF 180
LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF
Sbjct: 121 LADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIF 180
Query: 181 DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL 240
DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL
Sbjct: 181 DCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKL 240
Query: 241 IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED 300
IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED
Sbjct: 241 IHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKED 300
Query: 301 SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ 354
SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ
Sbjct: 301 SKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ 354
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 32.7 bits (73), Expect = 0.51
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 259 SRNNTPECLA----PVDLVVKKELRASGSSQRMLQWLATKSPKKEDSKTPQKEESDVPQW 314
+RN E LA +D V+ K +S R L + KKE+ +TP++EE Q
Sbjct: 194 NRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEE-ETPKQEE----QK 248
Query: 315 SSQFLQKSPLP---TKRGTAGLLEQ-WLKREKEEE 345
S+ ++ P R TA +LE+ +K+EKE+E
Sbjct: 249 ESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDE 283
>gi|40254924 leucine rich repeat containing 59 [Homo sapiens]
Length = 307
Score = 32.7 bits (73), Expect = 0.51
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 274 VKKELRASGSSQRMLQWLATKSPKKEDSKTPQKEESDVPQWSSQFLQKSPLPTK 327
++K +A +R ++ A K+ K+E K P+KE + P+ S + P P K
Sbjct: 187 LRKREKAEEKERRRKEYDALKAAKREQEKKPKKEANQAPKSKSGSRPRKPPPRK 240
>gi|34304322 mitochondrial ribosomal protein L45 [Homo sapiens]
Length = 306
Score = 32.0 bits (71), Expect = 0.86
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 142 IYFPQIKTEK-----SGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYT 196
IY P+ KTEK + G PE ++ + L AGIFD + PPEG + S
Sbjct: 45 IYQPKFKTEKEFMQHARKAGLVIPPEKSDR---SIHLACTAGIFDAYVPPEGDARISSL- 100
Query: 197 IITVDSCKGLSDIHHRMPAILDGEEAVSKWLDF 229
S +GL + RM + + ++ + D+
Sbjct: 101 -----SKEGLIERTERMKKTMASQVSIRRIKDY 128
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 294 KSPKKEDSKTPQKEESDV-PQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPY 352
KSP+KE++K+P+K +S V + S KSP+ + + + +K E + AK P
Sbjct: 653 KSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPV 712
Query: 353 SQ 354
+
Sbjct: 713 KE 714
Score = 30.4 bits (67), Expect = 2.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 294 KSPKKEDSKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEE 345
KSP KE++KTP+K +S V + ++ +K+ P K T + K +EE
Sbjct: 723 KSPVKEEAKTPEKAKSPVKE-EAKSPEKAKSPEKAKTLDVKSPEAKTPAKEE 773
Score = 29.3 bits (64), Expect = 5.6
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 243 PTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKEDSK 302
P E + S V + E +PV K + KSP KE++K
Sbjct: 595 PAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEK-------AKSPTKEEAK 647
Query: 303 TPQKEES-DVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYSQ 354
+P+K +S + + S KSP+ + + + +K E + AK P +
Sbjct: 648 SPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKE 700
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 254 SVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKEDSKTPQKEESDVPQ 313
S ++ S ++ PEC A + +E +SG KK++ + KEES+V +
Sbjct: 657 SDISESEDSGPECTALKSIFTTEESESSGDE------------KKQEITSNFKEESNVMR 704
Query: 314 WSSQFLQKSPLPTK 327
FLQKS P++
Sbjct: 705 ---NFLQKSQKPSR 715
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 29.6 bits (65), Expect = 4.3
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 281 SGSSQRMLQWLATKSPKKEDSKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGL-LEQWLK 339
SGSS W+ P S T + + PQ+ + L+ PLPT GT GL L+Q +
Sbjct: 538 SGSS-----WVQGDDPSM--SLTQKGDGESQPQFPAVPLE--PLPTTEGTPGLPLQQAEE 588
Query: 340 REKEEEPVA 348
R + +EP+A
Sbjct: 589 RYESQEPLA 597
>gi|21614542 single-minded homolog 1 [Homo sapiens]
Length = 766
Score = 29.3 bits (64), Expect = 5.6
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 230 GEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVK----KELRAS---- 281
G+V+T+ L + + +++V+NSR++ P C+ V+ V+ K L+ S
Sbjct: 288 GQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQI 347
Query: 282 GSSQRMLQWLATKSPKKEDSKTPQK---EESDVPQWSSQFLQKSPLPTKRGTAGLLEQW 337
+S+ + ++ +P D++ K S +S + Q S T+R + QW
Sbjct: 348 SASKPAFSYTSSSTPTMTDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQW 406
>gi|21237768 MAP kinase-activated protein kinase 5 isoform 2 [Homo
sapiens]
Length = 473
Score = 29.3 bits (64), Expect = 5.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 134 TNQRQPYFIYFPQI-------KTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPP 186
T Q PY++ PQ+ + EKSG I + +P + K D W L + + C PP
Sbjct: 182 TPQFTPYYVA-PQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVIIYVMLCGYPP 240
>gi|21237765 MAP kinase-activated protein kinase 5 isoform 1 [Homo
sapiens]
Length = 471
Score = 29.3 bits (64), Expect = 5.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 134 TNQRQPYFIYFPQI-------KTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPP 186
T Q PY++ PQ+ + EKSG I + +P + K D W L + + C PP
Sbjct: 182 TPQFTPYYVA-PQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVIIYVMLCGYPP 240
>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 5.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 285 QRMLQWLATKS---PKKEDSKTPQKEESDVPQWSSQFLQ 320
++++QW P ED + +K D+P W +FL+
Sbjct: 56 KKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK 94
>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
sapiens]
Length = 160
Score = 29.3 bits (64), Expect = 5.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 285 QRMLQWLATKS---PKKEDSKTPQKEESDVPQWSSQFLQ 320
++++QW P ED + +K D+P W +FL+
Sbjct: 56 KKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK 94
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 231 EVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPE---CLAPVDLVVKKELRASGSSQRM 287
E ST K PTE T ++ + TP ++P L + E + +
Sbjct: 729 EKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPT 788
Query: 288 LQWLATKSP--KKEDSKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEE 345
+ T+ P E+ TP +E + + S ++K LPT+ T + E + EK
Sbjct: 789 IP---TEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTISTEKLTI 845
Query: 346 PVAK 349
P+ K
Sbjct: 846 PMEK 849
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 231 EVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPE---CLAPVDLVVKKELRASGSSQRM 287
E ST K PTE T ++ + TP ++P L + E + +
Sbjct: 729 EKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPT 788
Query: 288 LQWLATKSP--KKEDSKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEE 345
+ T+ P E+ TP +E + + S ++K LPT+ T + E + EK
Sbjct: 789 IP---TEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTISTEKLTI 845
Query: 346 PVAK 349
P+ K
Sbjct: 846 PMEK 849
>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
Length = 1356
Score = 28.9 bits (63), Expect = 7.3
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 295 SPKKEDSKTPQKEES---DVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEE 345
SPK D K + S D WS+QF + + + + ++ +WL++++++E
Sbjct: 187 SPKTCDRKKDENYRSLPRDTSNWSNQFQRDNARSSLSASHPMVGKWLEKQEQDE 240
>gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens]
Length = 1153
Score = 28.9 bits (63), Expect = 7.3
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 44 KSPQSNSPVLLSRLHFEKDADS---SERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSD 100
K + + +LL + + D+DS S++ W L+ S ++ PSKLQ C
Sbjct: 644 KKEKEEADLLLEQQRLDADSDSGDDSDKRSCEESWKLITSLREKLPPSKLQTIVKKCGLP 703
Query: 101 TVMEKRS----FKVP----LGKGRRCVVLAD 123
+ +KR +++P L K + V ++D
Sbjct: 704 SSGKKREPIKMYQIPQRRRLSKDSKWVTISD 734
>gi|4502745 cyclin-dependent kinase 8 [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 9.5
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 253 SSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKKEDSKTPQKEESDVP 312
S+++ + R NT + + + K +++ + +LQ L T P K + ++
Sbjct: 277 STLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD---- 332
Query: 313 QWSSQFLQKSPLPTKRGTAGLLEQWLKRE--KEEEP 346
+ + PLPT AG + KRE EEEP
Sbjct: 333 ----PYFLEDPLPTSDVFAGCQIPYPKREFLTEEEP 364
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 28.5 bits (62), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 19 AYQDRRGQQRLPEWRDPDKYCPSYNKS 45
A+ DR RLPE +PD C YN++
Sbjct: 128 AWPDRMRCDRLPEQGNPDTLCMDYNRT 154
>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
Length = 502
Score = 28.5 bits (62), Expect = 9.5
Identities = 55/228 (24%), Positives = 84/228 (36%), Gaps = 43/228 (18%)
Query: 170 NWRL---LTMAGIFDCWEPPEGGDVLYS---YTIITVDSCKGLSDIH-------HRMPAI 216
NW L L A I E PE G V + + + K L+D+ +R P +
Sbjct: 145 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL 204
Query: 217 LDGEEAVSKWLD-------FGEVST--------QEALKLIHPTENITFHAVSSVVNNSRN 261
L G +K +D F E+ T QE +K +P + + SV+ +
Sbjct: 205 LLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPAD 264
Query: 262 NTPECLA--PVDLVVKKELRASGSSQRMLQWLATKSPKKEDSKT-----------PQKEE 308
E + P ++K+ R + + L K K DSK P K
Sbjct: 265 KDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRI 324
Query: 309 SDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKRE--KEEEPVAKRPYSQ 354
+ + Q+ PLPT AG + KRE E++P K +Q
Sbjct: 325 TSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLNEDDPEEKGDKNQ 372
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,820,722
Number of Sequences: 37866
Number of extensions: 766691
Number of successful extensions: 2106
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 40
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.