Search of human proteins with 5454152

Search of human proteins with 5454152

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5454152 ubiquinol-cytochrome c reductase binding protein
[Homo sapiens]
         (111 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5454152 ubiquinol-cytochrome c reductase binding protein [Hom...   233   3e-62
gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reduct...   216   3e-57
gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reduct...   216   3e-57
gi|147903302 MAP7 domain containing 3 [Homo sapiens]                   32   0.14 
gi|7705897 kynurenine aminotransferase II [Homo sapiens]               31   0.24 
gi|33469970 kynurenine aminotransferase II [Homo sapiens]              31   0.24 
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    31   0.24 
gi|33620755 YEATS domain containing 2 [Homo sapiens]                   31   0.24 
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 30   0.32 
gi|55956786 spindle assembly associated Sfi1 homolog isoform a [...    30   0.42 
gi|55956784 spindle assembly associated Sfi1 homolog isoform b [...    30   0.42 
gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Ho...    30   0.42 
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s...    29   0.92 
gi|4826870 nucleobindin 2 [Homo sapiens]                               28   1.2  
gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]         28   1.6  
gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]         28   1.6  
gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]         28   1.6  
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho...    28   2.1  
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho...    28   2.1  
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho...    28   2.1  
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho...    28   2.1  
gi|56181387 STIP1 homology and U-box containing protein 1 [Homo ...    27   3.5  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    27   3.5  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    27   3.5  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    27   4.6  
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    27   4.6  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    27   4.6  
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    27   4.6  
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    27   4.6  
gi|21361565 ATP synthase, H+ transporting, mitochondrial F0 comp...    27   4.6  

>gi|5454152 ubiquinol-cytochrome c reductase binding protein [Homo
           sapiens]
          Length = 111

 Score =  233 bits (593), Expect = 3e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60
           MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60

Query: 61  FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
Sbjct: 61  FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111


>gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score =  216 bits (550), Expect = 3e-57
 Identities = 100/111 (90%), Positives = 108/111 (97%)

Query: 1   MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60
           MAGK+AV+ASGKWLDGIRKWYYNA GFNKLGLM+DDTIYE+EDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60

Query: 61  FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           F +KRALDL++KHQILPKEQWTKYEEENFYLEPYLKEVIRERKER EWAK+
Sbjct: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111


>gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score =  216 bits (550), Expect = 3e-57
 Identities = 100/111 (90%), Positives = 108/111 (97%)

Query: 1   MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60
           MAGK+AV+ASGKWLDGIRKWYYNA GFNKLGLM+DDTIYE+EDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60

Query: 61  FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           F +KRALDL++KHQILPKEQWTKYEEENFYLEPYLKEVIRERKER EWAK+
Sbjct: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111


>gi|147903302 MAP7 domain containing 3 [Homo sapiens]
          Length = 876

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 51  LPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREE 107
           + + L  +R    +R  D N + Q+L KE+ TK + E    E   K  ++ERKE+EE
Sbjct: 67  IKQRLARERREEKRRQQDANKETQLLEKERKTKLQYEKQMEERQRK--LKERKEKEE 121


>gi|7705897 kynurenine aminotransferase II [Homo sapiens]
          Length = 425

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 7   VSASGKWLDGIRKWYYNAAG----FNKLGLMRDDTIYEDEDVKEAIRRLPENLY 56
           ++A+ KWL G+ +W+  AAG        G+     + E++ VK  +  LP N +
Sbjct: 334 LAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387


>gi|33469970 kynurenine aminotransferase II [Homo sapiens]
          Length = 425

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 7   VSASGKWLDGIRKWYYNAAG----FNKLGLMRDDTIYEDEDVKEAIRRLPENLY 56
           ++A+ KWL G+ +W+  AAG        G+     + E++ VK  +  LP N +
Sbjct: 334 LAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 28   NKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRI-----KRALDLNLKHQILPKEQWT 82
            N+L   ++    E +  +  I++L E L N ++        +   DLN+K +I+   + T
Sbjct: 1281 NELEKKKNQCSQELDMKQRTIQQLKEQLNNQKVEEAIQQYERACKDLNVKEKIIEDMRMT 1340

Query: 83   KYEEENFY------LEPYLKEVIRERKEREEWAKK 111
              E+E         LE  L+EV R   E E+W +K
Sbjct: 1341 LEEQEQTQVEQDQVLEAKLEEVERLATELEKWKEK 1375


>gi|33620755 YEATS domain containing 2 [Homo sapiens]
          Length = 1422

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 42   EDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLEP 93
            ED+++  +R PEN     +  +   + +N+K     KEQ  K EE  FYL P
Sbjct: 1278 EDLQQFQKREPENEEEVDILSLSEPVKINIK-----KEQEEKQEEVKFYLPP 1324


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 28  NKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRAL---DLNLKHQILPKEQWTKY 84
           NKL L   D + E+E ++E +   P+ + +   FR  + L       ++QIL KE     
Sbjct: 487 NKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKE-IESL 545

Query: 85  EEENFYLEPYLKEVIRERKER 105
           EEE   L+  ++++ +ER +R
Sbjct: 546 EEERLDLKKKIRQMAQERGKR 566



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/85 (23%), Positives = 42/85 (49%)

Query: 27   FNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEE 86
            +NK+   +++   E++++K  I+RL   L    +   K++L   L+ ++   E   + + 
Sbjct: 1833 YNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGKV 1892

Query: 87   ENFYLEPYLKEVIRERKEREEWAKK 111
            E   L+P  ++  +E   R E  KK
Sbjct: 1893 EEVDLKPMKEKNAKEELIRWEEGKK 1917


>gi|55956786 spindle assembly associated Sfi1 homolog isoform a
           [Homo sapiens]
          Length = 1242

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 62  RIKRALDLN-LKHQILPKE--QWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           R+ RAL  + LKH+ L  +   W+++ E+  Y++   ++V+   K  + W K+
Sbjct: 235 RVSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKHHQHWQKR 287


>gi|55956784 spindle assembly associated Sfi1 homolog isoform b
           [Homo sapiens]
          Length = 1211

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 62  RIKRALDLN-LKHQILPKE--QWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           R+ RAL  + LKH+ L  +   W+++ E+  Y++   ++V+   K  + W K+
Sbjct: 235 RVSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKHHQHWQKR 287


>gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Homo
           sapiens]
          Length = 569

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 73  HQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111
           +Q++P  QW + + E   L+  L+ V RER E +E  ++
Sbjct: 284 YQLVPDTQWEQLQTEGRQLQKDLESVSRERDELQEGLRR 322


>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
           sapiens]
          Length = 669

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 4   KQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRI 63
           + AV A+G      R W       N+ G +R+ T   D      I  +P  LY+    R 
Sbjct: 193 EHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDR-----ILGIPTQLYSHHFQRF 247

Query: 64  KRALDLNLKHQILPKEQWTKYEEE 87
           K  +  NL   +L  EQ+ +   E
Sbjct: 248 KEHVQNNLPRDLLTGEQFIQLRRE 271


>gi|4826870 nucleobindin 2 [Homo sapiens]
          Length = 420

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 43  DVKEAIRRLPENLYN------DRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLK 96
           +++E   R+ E++ N      DR+  ++  L    K + L  + W   +++ F+ E  LK
Sbjct: 289 EMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELK 348

Query: 97  E 97
           E
Sbjct: 349 E 349


>gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]
          Length = 900

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 72  KHQILPKEQWTKYEEENFYLEPYL-KEVIRERKER 105
           K + LP E+W  YEE +   E Y+ K  ++E +ER
Sbjct: 562 KEEELPDERWMSYEERHLLDELYITKRRLKEIEER 596


>gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]
          Length = 879

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 72  KHQILPKEQWTKYEEENFYLEPYL-KEVIRERKER 105
           K + LP E+W  YEE +   E Y+ K  ++E +ER
Sbjct: 569 KEEELPDERWMSYEERHLLDELYITKRRLKEIEER 603


>gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]
          Length = 872

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 72  KHQILPKEQWTKYEEENFYLEPYL-KEVIRERKER 105
           K + LP E+W  YEE +   E Y+ K  ++E +ER
Sbjct: 562 KEEELPDERWMSYEERHLLDELYITKRRLKEIEER 596


>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
           sapiens]
          Length = 638

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 21/91 (23%)

Query: 42  EDVKEAIRRLPENLY--NDRMFRIKRAL------------DLNLKHQILPKEQWTKY--- 84
           E  K  I +L ENL   ND +  +K++L            DLN+K Q+L KE+       
Sbjct: 162 EKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRN 221

Query: 85  ----EEENFYLEPYLKEVIRERKEREEWAKK 111
               E  N  ++   ++ I E++ERE+  +K
Sbjct: 222 REHNENLNAEMQNLKQKFILEQQEREKLQQK 252


>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
           sapiens]
          Length = 725

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 21/91 (23%)

Query: 42  EDVKEAIRRLPENLY--NDRMFRIKRAL------------DLNLKHQILPKEQWTKY--- 84
           E  K  I +L ENL   ND +  +K++L            DLN+K Q+L KE+       
Sbjct: 249 EKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRN 308

Query: 85  ----EEENFYLEPYLKEVIRERKEREEWAKK 111
               E  N  ++   ++ I E++ERE+  +K
Sbjct: 309 REHNENLNAEMQNLKQKFILEQQEREKLQQK 339


>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
           sapiens]
          Length = 709

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 21/91 (23%)

Query: 42  EDVKEAIRRLPENLY--NDRMFRIKRAL------------DLNLKHQILPKEQWTKY--- 84
           E  K  I +L ENL   ND +  +K++L            DLN+K Q+L KE+       
Sbjct: 233 EKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRN 292

Query: 85  ----EEENFYLEPYLKEVIRERKEREEWAKK 111
               E  N  ++   ++ I E++ERE+  +K
Sbjct: 293 REHNENLNAEMQNLKQKFILEQQEREKLQQK 323


>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
           sapiens]
          Length = 724

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 21/91 (23%)

Query: 42  EDVKEAIRRLPENLY--NDRMFRIKRAL------------DLNLKHQILPKEQWTKY--- 84
           E  K  I +L ENL   ND +  +K++L            DLN+K Q+L KE+       
Sbjct: 248 EKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRN 307

Query: 85  ----EEENFYLEPYLKEVIRERKEREEWAKK 111
               E  N  ++   ++ I E++ERE+  +K
Sbjct: 308 REHNENLNAEMQNLKQKFILEQQEREKLQQK 338


>gi|56181387 STIP1 homology and U-box containing protein 1 [Homo
           sapiens]
          Length = 303

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 40  EDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFY----LEPYL 95
           E E   EAI  L       +  R+    D+    +I  K++W   EE   +    L  YL
Sbjct: 106 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL 165

Query: 96  KEVIRERKERE 106
             +I   +ERE
Sbjct: 166 SRLIAAERERE 176


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 29   KLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEEN 88
            KL L   +  Y  ED+K+  +++ E+L              NL  + L KEQ +  E+  
Sbjct: 4209 KLALALQERKYAIEDLKDQKQKMIEHL--------------NLDDKELVKEQTSHLEQRW 4254

Query: 89   FYLEPYLKEVIR 100
            F LE  +K  I+
Sbjct: 4255 FQLEDLIKRKIQ 4266


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 29   KLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEEN 88
            KL L   +  Y  ED+K+  +++ E+L              NL  + L KEQ +  E+  
Sbjct: 4280 KLALALQERKYAIEDLKDQKQKMIEHL--------------NLDDKELVKEQTSHLEQRW 4325

Query: 89   FYLEPYLKEVIR 100
            F LE  +K  I+
Sbjct: 4326 FQLEDLIKRKIQ 4337


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
           sapiens]
          Length = 2462

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 12/82 (14%)

Query: 35  DDTIYEDEDVKEAIR---RLPENLYNDRMFRIKRAL--DLNLKHQILPKEQWTKYEEENF 89
           DDT  ED D KEA+    R   N    R  RI R++  + N +  I P++       E  
Sbjct: 551 DDTSGEDNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSAELASME-- 608

Query: 90  YLEPYLKEVIRERKEREEWAKK 111
                L E  R  +E  E AKK
Sbjct: 609 -----LNESSRWTEEEMETAKK 625


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
           sapiens]
          Length = 2524

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 12/82 (14%)

Query: 35  DDTIYEDEDVKEAIR---RLPENLYNDRMFRIKRAL--DLNLKHQILPKEQWTKYEEENF 89
           DDT  ED D KEA+    R   N    R  RI R++  + N +  I P++       E  
Sbjct: 551 DDTSGEDNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSAELASME-- 608

Query: 90  YLEPYLKEVIRERKEREEWAKK 111
                L E  R  +E  E AKK
Sbjct: 609 -----LNESSRWTEEEMETAKK 625


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 62  RIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWA 109
           +++R  +L  K + L +E+ ++Y+  N Y++  L + I + K R+E++
Sbjct: 269 KVERQAELKRKFEQLKQERISRYQGVNLYIK-NLDDTIDDEKLRKEFS 315


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 62  RIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWA 109
           +++R  +L  K + L +E+ ++Y+  N Y++  L + I + K R+E++
Sbjct: 269 KVERQAELKRKFEQLKQERISRYQGVNLYIK-NLDDTIDDEKLRKEFS 315


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 62  RIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWA 109
           +++R  +L  K + L +E+ ++Y+  N Y++  L + I + K R+E++
Sbjct: 269 KVERQAELKRKFEQLKQERISRYQGVNLYIK-NLDDTIDDEKLRKEFS 315


>gi|21361565 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit B1 precursor [Homo sapiens]
          Length = 256

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 53  ENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENF--YLEPYLKEVIRERKEREEWAK 110
           E  Y +R++R+ + +   L + I  +    + E+E+   ++E ++ + I  ++E+E  AK
Sbjct: 179 EVTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAK 238


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,357,315
Number of Sequences: 37866
Number of extensions: 176341
Number of successful extensions: 637
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 54
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.