Guide to the Human Genome
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Name: ATP5F1 Sequence: fasta or formatted (256aa) NCBI GI: 21361565
Description:

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 precursor

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         25           3
 C cysteine            0.4          1           1
 D aspartate           2.3          6           1
 E glutamate           6.6         17           2
 F phenylalanine       3.5          9           2
 G glycine             5.1         13           2
 H histidine           2.7          7           1
 I isoleucine          5.5         14           1
 K lysine              7.8         20           2
 L leucine            10.2         26           2
 M methionine          2.7          7           2
 N asparagine          3.1          8           2
 P proline             4.7         12           2
 Q glutamine           7.4         19           2
 R arginine            4.3         11           2
 S serine              4.3         11           1
 T threonine           5.1         13           1
 V valine              9.0         23           2
 W tryptophan          0.4          1           1
 Y tyrosine            5.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase, H+ transporting, mitochondrial F0 comp... 
DST                   0.023   dystonin isoform 4 
DST                   0.023   dystonin isoform 3 
DST                   0.023   dystonin isoform 2 
DST                   0.023   dystonin isoform 1 
DST                   0.023   dystonin isoform 1eB precursor 
DST                   0.023   dystonin isoform 1eA precursor 
DST                   0.023   dystonin isoform 1e precursor 
KIF4B                 0.017   kinesin family member 4B 
KIF4A                 0.017   kinesin family member 4 
CEP164                0.015   centrosomal protein 164kDa 
C10orf118             0.015   CTCL tumor antigen L14-2 
KRT17                 0.013   keratin 17 
SCN9A                 0.013   sodium channel, voltage-gated, type IX, alpha 
C2orf77               0.013   hypothetical protein LOC129881 
DNAJC9                0.013   DnaJ homolog, subfamily C, member 9 
SLK                   0.010   serine/threonine kinase 2 
PLCB3                 0.010   phospholipase C beta 3 
CIT                   0.010   citron 
CCDC147               0.010   coiled-coil domain containing 147 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.010   ataxin 2-binding protein 1 isoform 4 
AKAP9                 0.010   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.010   A-kinase anchor protein 9 isoform 3 
CCDC99                0.010   coiled-coil domain containing 99 
OMA1                  0.008   OMA1 homolog, zinc metallopeptidase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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