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Search of human proteins with 5454106
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5454106 TBP-related factor 10 [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5454106 TBP-related factor 10 [Homo sapiens] 432 e-122
gi|24497554 homeobox A13 [Homo sapiens] 50 2e-06
gi|154146199 sal-like 3 [Homo sapiens] 49 3e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 6e-06
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 48 7e-06
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 47 1e-05
gi|12707580 paired-like homeobox 2b [Homo sapiens] 46 2e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 46 3e-05
gi|171543895 ataxin 2 [Homo sapiens] 46 3e-05
gi|28269693 xylosyltransferase I [Homo sapiens] 45 5e-05
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 45 5e-05
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 45 6e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 45 6e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 44 8e-05
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 44 8e-05
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 44 8e-05
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 44 8e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 1e-04
gi|153070260 myristoylated alanine-rich protein kinase C substra... 44 1e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 44 1e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 44 1e-04
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 44 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 43 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 43 2e-04
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 43 2e-04
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 43 2e-04
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 43 2e-04
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 43 2e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 43 2e-04
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 432 bits (1112), Expect = e-122
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG
Sbjct: 1 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
Query: 61 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL 120
TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL
Sbjct: 61 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL 120
Query: 121 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA 180
MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA
Sbjct: 121 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA 180
Query: 181 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT 218
SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT
Sbjct: 181 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT 218
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/99 (40%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 3 CSGSGADPEAAPASAASA----PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAA 58
C A P AASA PG APP SA AA ++ AA A+ A ++GGPG A
Sbjct: 87 CRNLMAHPAPLAPGAASAYSSAPGEAPP-SAAAAAAAAAAAAAAAAAASSSGGPG---PA 142
Query: 59 GGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVY 97
G G AA+ P AA S+G AA P G +G Y
Sbjct: 143 GPAGAEAAKQCSPCS--AAAQSSSGPAALPYGYFGSGYY 179
Score = 41.2 bits (95), Expect = 7e-04
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAG----GPGAGAA 57
+ S + P AP SAA+A A +A AA SS+ A PAG P + AA
Sbjct: 101 AASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAA 160
Query: 58 AGGTGPLAARAG------EPAERRGAAPVSAGGAAPPEGAISNGVY 97
+GP A G P R G P + A P A + +
Sbjct: 161 QSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAF 206
Score = 32.0 bits (71), Expect = 0.42
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEP 71
AA A+AA+A A P++ AA S A A A AAA L A
Sbjct: 39 AAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAA-AAAAAANQCRNLMAHPAPL 97
Query: 72 AERRGAAPVSAGGAAPPEGAISNGVYVLPSAA 103
A +A SA G APP A + +AA
Sbjct: 98 APGAASAYSSAPGEAPPSAAAAAAAAAAAAAA 129
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 48.9 bits (115), Expect = 3e-06
Identities = 41/109 (37%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 10 PEAAPASAASAPGPAPP-VSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARA 68
P +PA+A SAPGPAP + AALP S AG P A A G+GP A
Sbjct: 240 PSLSPAAAPSAPGPAPSQLPGLAALPLS------------AGAPAAAIA--GSGPAA--- 282
Query: 69 GEPAERRGAAPVS--AGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
PA GA P+S GA+ P G PSAA P + P
Sbjct: 283 --PAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAP 329
Score = 41.6 bits (96), Expect = 5e-04
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPA 72
APA+A + GPA P + A P S ++P G A P A AA AA A PA
Sbjct: 270 APAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPA-EPSAPAAPSAAPAPAAPAPAPA 328
Query: 73 ERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSST 114
+ A+ + PP A++ G L AA G P++ T
Sbjct: 329 PQSAASSQPQSASTPP--ALAPG--SLLGAAPGLPSPLLPQT 366
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKAS-PAGTAGGPGAGAAAGG 60
S G A+P +APA+ ++AP PA P APA ++++ AS P A G GAA G
Sbjct: 300 STPGGPAEP-SAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPGL 358
Query: 61 TGPL 64
PL
Sbjct: 359 PSPL 362
Score = 32.3 bits (72), Expect = 0.32
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 27/133 (20%)
Query: 10 PEAAPASAASAPG-PAPPVSAPAALPSSTAAENKASPAGTAGGPGA-GAAAGGTGPL--- 64
P AAPA A G P+ V+ A L + A + A AGG GA G A PL
Sbjct: 148 PPAAPAPPTPAYGAPSTNVTLEALLSTKVAVAQFSQGARAAGGSGAGGGVAAAAVPLILE 207
Query: 65 ----------------------AARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSA 102
A P R +P +A A P + G+ LP +
Sbjct: 208 QLMALQQQQIHQLQLIEQIRSQVALMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLS 267
Query: 103 ANGDVKPVVSSTP 115
A + S P
Sbjct: 268 AGAPAAAIAGSGP 280
Score = 30.0 bits (66), Expect = 1.6
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 20 APGPAP---PVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRG 76
AP P P P +PA+ PS A A AG G A G P+ A EP +
Sbjct: 86 APAPPPEDFPEPSPASSPSERAESEAAEEAGAEG------AEGEARPVEKEA-EPMDAEP 138
Query: 77 AAPVSAGGAAPPEGAISNGVYVLPS 101
A A P A Y PS
Sbjct: 139 AGDTRAPRPPPAAPAPPTPAYGAPS 163
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.1 bits (113), Expect = 6e-06
Identities = 50/159 (31%), Positives = 62/159 (38%), Gaps = 38/159 (23%)
Query: 10 PEAAPASAASAPG-PAPPVSAPAALPSSTAAENKAS-------------PAGTAGGPGAG 55
P APA+ A PG PA P +A A+P AA+N S PAG +G PG G
Sbjct: 273 PPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Query: 56 AAAGGTGP--------LAARAGEPAERRGAAPVSAGGAA------PPEGAISNGVYV--- 98
AAA P +A PA + AA A AA +GA+ + V
Sbjct: 333 AAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPP 392
Query: 99 -------LPSAANGDVKPVVSSTPLVDFLMQLEDYTPTI 130
LP A G V +S TP TPT+
Sbjct: 393 APGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTV 431
Score = 45.4 bits (106), Expect = 4e-05
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 2/130 (1%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
GS PA+AA A GP P + PA A +A P G GPG G G P
Sbjct: 132 GSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGP-GPGPGPGPGPGPGPGKPA 190
Query: 65 AARAGEPAERRGAAPVSAGGAAPPEGAISNG-VYVLPSAANGDVKPVVSSTPLVDFLMQL 123
A + A S AAP ++NG +LP V+ + P V
Sbjct: 191 GPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPP 250
Query: 124 EDYTPTIPDA 133
P+ P A
Sbjct: 251 APAAPSPPAA 260
Score = 44.7 bits (104), Expect = 6e-05
Identities = 35/81 (43%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAG 69
P AAPA AA A P PP APA L A P G GP AA P AA+ G
Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATL---------ARPPGHPAGPPT-AAPAVPPPAAAQNG 306
Query: 70 EPAERRGAAPVSAGGAAPPEG 90
A GAAP A A P G
Sbjct: 307 GSA---GAAPAPAPAAGGPAG 324
Score = 39.3 bits (90), Expect = 0.003
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 7 GADPEAAPASAASAPGPAPPVSAP--------AALPSSTAAENKASPAGTAG--GPGAGA 56
GA PE PA A G P P A P+ AA+ + P G+AG P A
Sbjct: 84 GAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAA 143
Query: 57 AAGGTGPLAARAGEPAERRGAAPVSA-GGAAPPEG 90
AA GP A AG PA+ G A ++A G P G
Sbjct: 144 AAVAAGPEPAPAG-PAKPAGPAALAARAGPGPGPG 177
Score = 38.5 bits (88), Expect = 0.004
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPA 72
+PA AA A AP AP A P + PAG A GG GP R G P+
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAP-------EPPPAGRA-------RPGGGGP--QRPGPPS 109
Query: 73 ERR-----GAAPVSAGGAAPPEGAISNGVYVLPSAA 103
RR G AP +A PPEG+ + V +AA
Sbjct: 110 PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAA 145
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/79 (36%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEP 71
A PA A+ P P SA + P AA A P GP A G LAARAG P
Sbjct: 117 AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP---AKPAGPAALAARAG-P 172
Query: 72 AERRGAAPVSAGGAAPPEG 90
G P G P G
Sbjct: 173 GPGPGPGPGPGPGPGKPAG 191
Score = 34.7 bits (78), Expect = 0.065
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 14 PASAASAPGPA--------PPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA 65
PA+ P PA PP AA P+ A A+PA P A AAA P A
Sbjct: 222 PAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA-----PAAPAAAPPPPPPA 276
Query: 66 ARAGEPAERRGAAPVSAGGAAPPEGAISNG 95
A P +A A PP A NG
Sbjct: 277 PATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Score = 28.5 bits (62), Expect = 4.6
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 40 ENKASPAGTAGG---PGAGAAAGGTGPLAARAGEPAERRGAA--PVSAGGAAPPEG 90
E +A+ AG G G+ A A G GP A G P GAA P AG A P G
Sbjct: 49 EVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAP----GAAPEPPPAGRARPGGG 100
Score = 27.7 bits (60), Expect = 7.9
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAP-AALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
G G A P +A + G A +++ AA P+ + N + P A T P
Sbjct: 183 GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPP 242
Query: 64 LAARAGEPAERRGAAPVSAGGAAP 87
A PA + P + AAP
Sbjct: 243 FVGAAAPPAPAAPSPPAAPAPAAP 266
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 47.8 bits (112), Expect = 7e-06
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 9 DPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARA 68
DPE P A P A P+S AA KA+P A G + PL+AR+
Sbjct: 844 DPEMLPPKTARQTENVSRTRKPLARPNSRAAAPKATPVAAAKTKGLAGGDRASRPLSARS 903
Query: 69 GEPAERRGAAPVSAGGAAP------PEGAISNGVYVLPSAANGDVKPVVSSTP 115
EP+E+ G AP+S + P P G+ S+ +P VS+TP
Sbjct: 904 -EPSEKGGRAPLSRKSSTPKTATRGPSGSASS-------------RPGVSATP 942
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 47.4 bits (111), Expect = 1e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP- 63
G P AA A+AAS PGP + + + A N +S AG G G+++ G+G
Sbjct: 18 GPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSSSAGEEKGATGGSSSSGSGAG 77
Query: 64 ---LAARAGEPAERRGAAPVSAGGAA 86
L A G A+ RGA +A GAA
Sbjct: 78 SCCLGAEGG--ADPRGAGSAAAAGAA 101
Score = 35.8 bits (81), Expect = 0.029
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 23 PAPPVSAPAALPSSTAAENKASP---AGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAP 79
P P PA P++ AA + P +G A P A A AG P ++ AGE G +
Sbjct: 12 PLPAARGPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNP-SSSAGEEKGATGGSS 70
Query: 80 VSAGGA 85
S GA
Sbjct: 71 SSGSGA 76
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 46.2 bits (108), Expect = 2e-05
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGT 61
S G G +P P+ A+ G P +PA P + A P G G PG G AA
Sbjct: 194 STGGPGPNPNPTPSCGANGGGGGGP--SPAGAPGA------AGPGGPGGEPGKGGAAAAA 245
Query: 62 GPLAARAGEPAERRGAAPVSAGGA----APPEGAISNGVYVLPSAANGDVKPVVSS 113
AA A A +AGG AP G I++ +P + G V+SS
Sbjct: 246 AAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITS----IPDSLGGPFASVLSS 297
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 45.8 bits (107), Expect = 3e-05
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAG 69
P PA AA++PGP PP S P A P+S A + G P AG A
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGA-PASPRAPRTSPYGGLPAAPLAGPAL----------- 808
Query: 70 EPAER--RGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
PA R R + P+SA + P GA P A +P SSTP
Sbjct: 809 -PARRLSRASRPLSASQPSLPHGA--------PGPA-ASTRPASSSTP 846
Score = 37.0 bits (84), Expect = 0.013
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 27/109 (24%)
Query: 10 PEAAPASAASAPGPAPPVSAP--AALPSSTAAE--------NKASPAGTAGGPGAGAAAG 59
P P + PGPAPP P ALP A E ++ S G G PGA + A
Sbjct: 36 PPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAK 95
Query: 60 GTGPLAARAGEPA-----------------ERRGAAPVSAGGAAPPEGA 91
G+ GEP RGAA A G P E A
Sbjct: 96 GSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEA 144
Score = 30.8 bits (68), Expect = 0.93
Identities = 30/99 (30%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 1 MSCSGSGADPEAAP-ASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAA-- 57
M G G P +P A+ A P P PP + P P P A PG G A
Sbjct: 1 MDARGGGGRPGESPGATPAPGPPPPPPPAPPQQQP--------PPPPPPAPPPGPGPAPP 52
Query: 58 -----AGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGA 91
A P AA G P R + S G P A
Sbjct: 53 QHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAA 91
Score = 27.7 bits (60), Expect = 7.9
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 16 SAASAPGPAPPVSAPAALPSSTAAENK-----ASPAGTAGGPGAGAAAGGTGPLAARAGE 70
S+ PG S P+ + A P G A GP + G A
Sbjct: 80 SSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPG 139
Query: 71 PAERRGAAPVSAGGAAPPEGA 91
PAE G+ AG A P G+
Sbjct: 140 PAEEAGSE--EAGPAGEPRGS 158
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 45.8 bits (107), Expect = 3e-05
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG-- 62
G GA P P++A PGP PP S ++ PS++ G A PG+ G G
Sbjct: 42 GGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPP 101
Query: 63 --------PLAARAGEPAERRGAAPVSAGGAAPPEGAIS 93
PLA+ PA A+P+ A A+PP +S
Sbjct: 102 RPFVVLLLPLASPGAPPAAPTRASPLGA-RASPPRSGVS 139
Score = 27.7 bits (60), Expect = 7.9
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKA------SPAGTAGGPGAGAAAGGTGPLA 65
A P AAS P PA P S A PSS A +++ SPAG T P
Sbjct: 721 AMPIPAAS-PTPASPASNRAVTPSSEAKDSRLQDQRQNSPAGNK----ENIKPNETSPSF 775
Query: 66 ARAGEPAERRGAAPV 80
++ AE +G +PV
Sbjct: 776 SK----AENKGISPV 786
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 45.1 bits (105), Expect = 5e-05
Identities = 33/81 (40%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 4 SGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
SG+G A P PAP AP AE A+ G GG G G GG GP
Sbjct: 40 SGAGERRGGAAVGGGEQPPPAP---APRRERRDLPAEPAAARGGGGGGGGGG---GGRGP 93
Query: 64 LA-ARAGEPAERRGAAPVSAG 83
A AR G P E RG P S G
Sbjct: 94 QARARGGGPGEPRGQQPASRG 114
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 45.1 bits (105), Expect = 5e-05
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTA---------GGP 52
S + + A AA +SAA+A P SAP + S ++++ A+ A A GG
Sbjct: 358 SAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGG 417
Query: 53 GAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLP 100
G G GG G A G AAP S G P A+ + V P
Sbjct: 418 GGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSP 465
Score = 29.3 bits (64), Expect = 2.7
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 13 APASAASAPGPAPPVSAPAA-----LPSSTAAENKASPAGTAGG---PG---AGAAAGGT 61
A A+AA+A G A S+P A L + A + S PG A AAA G
Sbjct: 294 AAAAAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGL 353
Query: 62 GPLAARAGEPAERRGAAPVSAGGAAPPEG 90
A+ A A AA +A APP G
Sbjct: 354 NSAASAAAAAAAAAAAASSAAAAGAPPSG 382
Score = 28.5 bits (62), Expect = 4.6
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 29 APAALPSSTAAENKASPAGTAGGPGAGAAA------GGTGPLAARAGEPAERRGAAPVSA 82
APAA +A + A+ A A + AAA GG+ P + + ++ AA +A
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAA 405
Query: 83 GGAAPPEGAISNG 95
A G G
Sbjct: 406 AAALGSRGGGGGG 418
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 44.7 bits (104), Expect = 6e-05
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 23 PAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAPVSA 82
P+ PV++ AALPS++ + + +S + +A A AAA AA A PA P +
Sbjct: 105 PSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFS 164
Query: 83 GGAAPPEGAISNGVYVLPSAA 103
+ PP G+Y PSAA
Sbjct: 165 SLSPPPP---PPGLYFSPSAA 182
Score = 29.3 bits (64), Expect = 2.7
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGT 61
S S S A AA A+AA+A + P A LP ++ P G P A A A
Sbjct: 130 SASASSASAAAA-AAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAA-- 186
Query: 62 GPLAARAGEP-AERRGAAPVSAGGA--APP 88
R +P AE G P+ G +PP
Sbjct: 187 ---VGRYPKPLAELPGRTPIFWPGVMQSPP 213
Score = 28.5 bits (62), Expect = 4.6
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 21 PGPAPPVSA--PAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAA 78
P PP+ A P++ SS+++ + + P GT PG G TG L++ P + A
Sbjct: 37 PAAYPPLPAGPPSSSSSSSSSSSPSPPLGT-HNPG-GLKPPATGGLSSLGSPPQQLSAAT 94
Query: 79 PVSAGG-AAPPEGAISNGVYVLPSAA 103
P + P +++G LPSA+
Sbjct: 95 PHGINDILSRPSMPVASGA-ALPSAS 119
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 44.7 bits (104), Expect = 6e-05
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 10 PEAAPASAASA---PGPAPP-------VSAPAALPSSTAAENKASPAGTAGGPGAGAAAG 59
P APA+AA+A P PAPP +APA P + AA A P+ PG A
Sbjct: 115 PRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQR- 173
Query: 60 GTGPLAARAGEPAERRGAAPVSAGGAAPP 88
PLAA PA AP + APP
Sbjct: 174 -AAPLAAPPPAPAAPPAVAPPAGPRRAPP 201
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 10 PEAAPASAASAPGPAP-----------PVSAPAALPSSTAAENKASPAGTAGGPGAGAAA 58
P AA A+A + P P P P++AP P++ A A PAG P A A
Sbjct: 149 PRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPA--VAPPAGPRRAP-PPAVA 205
Query: 59 GGTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
PL PA + P PPEG
Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQPPPEG 237
Score = 31.6 bits (70), Expect = 0.55
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 20 APGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAP 79
A PAPP AP P++ AA A+P T P A P ARA A AP
Sbjct: 106 ATPPAPPR-APRGAPAAAAA---AAPPPTPAPPPPPAPVAAAAP--ARAPRAAAAAATAP 159
Query: 80 VSAGGAAP 87
S G A P
Sbjct: 160 PSPGPAQP 167
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 4 SGSGADPEAAPASAA----------SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPG 53
SGSG A P + +APGP P S+ A P+ A + A A PG
Sbjct: 97 SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA-----PG 151
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPP 88
AA+GG+GP G+ +++ GA P AGG PP
Sbjct: 152 R-AASGGSGP--GSRGQGSDQVGARPSRAGGQPPP 183
Score = 35.4 bits (80), Expect = 0.038
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLA 65
P +SA ++P PA P +A P A+ + G GA A G PL
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 66 ARAGEPAERRGAAPVSAGG------AAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDF 119
R A RR A P G GA S G + + G +S+P DF
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTW----GSGGGPGTAAASSPSADF 241
Score = 35.0 bits (79), Expect = 0.049
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 6 SGAD-PEAAPASAASAPGP---APP--------VSAPAALPSSTAAENKASPAGTAGGPG 53
SGA P++ AA P P +PP SA PS + ++ PA PG
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAP-PEGAISNGVYVLPSAANGDVKPV 110
+A P A +A A R ++GG+ P G S+ V PS A G P+
Sbjct: 130 CSSARASPAPAAPQA---AARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 44.3 bits (103), Expect = 8e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 4 SGSGADPEAAPASAA----------SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPG 53
SGSG A P + +APGP P S+ A P+ A + A A PG
Sbjct: 97 SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA-----PG 151
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPP 88
AA+GG+GP G+ +++ GA P AGG PP
Sbjct: 152 R-AASGGSGP--GSRGQGSDQVGARPSRAGGQPPP 183
Score = 35.0 bits (79), Expect = 0.049
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 6 SGAD-PEAAPASAASAPGP---APP--------VSAPAALPSSTAAENKASPAGTAGGPG 53
SGA P++ AA P P +PP SA PS + ++ PA PG
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAP-PEGAISNGVYVLPSAANGDVKPV 110
+A P A +A A R ++GG+ P G S+ V PS A G P+
Sbjct: 130 CSSARASPAPAAPQA---AARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
Score = 34.3 bits (77), Expect = 0.084
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLA 65
P +SA ++P PA P +A P A+ + G GA A G PL
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 66 ARAGEPAERRGAAPVSAGG 84
R A RR A P G
Sbjct: 186 CRRCRAAPRRSARPFRRPG 204
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 4 SGSGADPEAAPASAA----------SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPG 53
SGSG A P + +APGP P S+ A P+ A + A A PG
Sbjct: 97 SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA-----PG 151
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPP 88
AA+GG+GP G+ +++ GA P AGG PP
Sbjct: 152 R-AASGGSGP--GSRGQGSDQVGARPSRAGGQPPP 183
Score = 35.4 bits (80), Expect = 0.038
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLA 65
P +SA ++P PA P +A P A+ + G GA A G PL
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 66 ARAGEPAERRGAAPVSAGG------AAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDF 119
R A RR A P G GA S G + + G +S+P DF
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTW----GSGGGPGTAAASSPSADF 241
Score = 35.0 bits (79), Expect = 0.049
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 6 SGAD-PEAAPASAASAPGP---APP--------VSAPAALPSSTAAENKASPAGTAGGPG 53
SGA P++ AA P P +PP SA PS + ++ PA PG
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAP-PEGAISNGVYVLPSAANGDVKPV 110
+A P A +A A R ++GG+ P G S+ V PS A G P+
Sbjct: 130 CSSARASPAPAAPQA---AARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 4 SGSGADPEAAPASAA----------SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPG 53
SGSG A P + +APGP P S+ A P+ A + A A PG
Sbjct: 97 SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA-----PG 151
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPP 88
AA+GG+GP G+ +++ GA P AGG PP
Sbjct: 152 R-AASGGSGP--GSRGQGSDQVGARPSRAGGQPPP 183
Score = 35.4 bits (80), Expect = 0.038
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 10 PEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLA 65
P +SA ++P PA P +A P A+ + G GA A G PL
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 66 ARAGEPAERRGAAPVSAGG------AAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDF 119
R A RR A P G GA S G + + G +S+P DF
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTW----GSGGGPGTAAASSPSADF 241
Score = 35.0 bits (79), Expect = 0.049
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 6 SGAD-PEAAPASAASAPGP---APP--------VSAPAALPSSTAAENKASPAGTAGGPG 53
SGA P++ AA P P +PP SA PS + ++ PA PG
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
Query: 54 AGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAP-PEGAISNGVYVLPSAANGDVKPV 110
+A P A +A A R ++GG+ P G S+ V PS A G P+
Sbjct: 130 CSSARASPAPAAPQA---AARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 44.3 bits (103), Expect = 8e-05
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 10 PEAAPASAASAPGPAPPVSAPAAL----PSSTAAENKASPAGTAGGPGAGAAAGGTGPLA 65
P PASA ++P P+ P APA P+S+A++ A+P P A P
Sbjct: 1547 PVLVPASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPL 1606
Query: 66 ARAGEPAERRGAAPVSAGGAAP-PEGAISNGVYVLPSAANGDVKPVVSSTPLV 117
A A GAAPV A P P A S+ P + PV + TP++
Sbjct: 1607 APLPVLAPSPGAAPVLASSQTPVPVMAPSS----TPGTSLASASPVPAPTPVL 1655
Score = 29.6 bits (65), Expect = 2.1
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 4 SGSGADPEAAPASAASAPGPAPPVSAPA-ALPSSTAAENKASPAGT-----AGGPGAGAA 57
S + A P + + S P +PP+ P A PSS+ P G G G+
Sbjct: 2782 SETSASPGSPSVRSMSGPESSPPIGGPCEAAPSSSLPTPPQQPFIARRHIELGVTGGGSP 2841
Query: 58 AGGTGPLAARAGEPAERRGAAP 79
G G L A +RR P
Sbjct: 2842 ENGDGALLAITPPAVKRRRGRP 2863
Score = 27.7 bits (60), Expect = 7.9
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 13 APASAAS---APGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP--LAAR 67
APAS + +P P P + AA + A + SPA A A+ P + +R
Sbjct: 1781 APASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSR 1840
Query: 68 AGEPAERRGAAPVSAGGAAPPEGAISNG 95
+ + +G +PP A S G
Sbjct: 1841 LPVSKDEPDTLTLRSGPPSPPSTATSFG 1868
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.9 bits (102), Expect = 1e-04
Identities = 40/124 (32%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 2 SCSGSGADPEAAPASAASAPG-PAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
S G G E A APG P PP P + ++ PAG AG PG + G
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPP--GPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA 1084
Query: 61 TGPLAARA--GEPAERRGAA-------PVSAGGAAPPEGAISNGVYVLPSAANGDVKPVV 111
GP R GE ER A P + G P A G P A G PV
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPA-GPRGPVG 1143
Query: 112 SSTP 115
S P
Sbjct: 1144 PSGP 1147
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G E P A A GP P + S + + PAG G PG A G GP A
Sbjct: 366 GQRGEPGPQGHAGAQGPP----GPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGA 421
Query: 67 RAGEPAERRGAAPVSAGGAAPPEGAISN----GVYVLPSAANGDVK 108
G P R GA GA G G+ +P A D K
Sbjct: 422 N-GAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 20 APGPAPPVSAPA-----ALPSSTAAENK------------ASPAGTAGGPGAGAAAGGTG 62
APGP P AP LP + A P GTAG PG+ A G G
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 63 PLAARA--GEPAERRGAAPVSAGGAAPPEG 90
P + G P +R P GA P G
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPG 384
Score = 38.1 bits (87), Expect = 0.006
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 5 GSGADPEAAP-ASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
GS P AA A PGP P + P + + K P G AG GA + G +GP
Sbjct: 864 GSPGGPGAAGFPGARGLPGP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 64 LAARAGEPAERRGAAPVSAGGAAPPEG 90
AG+P E+ GA P G
Sbjct: 923 -KGDAGQPGEKGSPGAQGPPGAPGPLG 948
Score = 37.7 bits (86), Expect = 0.008
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 6 SGADPEAAPASAASAPGP--------APPVSAPAALPSSTAAENKASPAGTAGGPGAGAA 57
+G E P A APG AP P L + A P G GG GA
Sbjct: 653 NGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712
Query: 58 AG--GTGPLAARAGEPAERRG-AAPVSAGGAAPPEGAISNGV 96
G G G P ER G +P G P G ++GV
Sbjct: 713 PGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGV 754
Score = 36.6 bits (83), Expect = 0.017
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPA 72
A A PGPA P P P GT+G PG+ + G GP GEP
Sbjct: 165 AVGGLAGYPGPAGPPGPPG-------------PPGTSGHPGSPGSPGYQGP----PGEPG 207
Query: 73 ERRGAAPVSAGGAAPPEG 90
+ + P GA P G
Sbjct: 208 QAGPSGPPGPPGAIGPSG 225
Score = 35.0 bits (79), Expect = 0.049
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 6 SGADPEAAPASAASAPGPAPPVSAPA--------ALPSSTAAENKASPAGTAGGPGAGAA 57
+G E P PG A P LP + G G PGA A
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGA 1045
Query: 58 AGGTGP-----LAARAGEPAERRGAAPVSAGGAAPPEGA 91
G GP A ++G+ E A P A G A GA
Sbjct: 1046 PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA 1084
Score = 34.7 bits (78), Expect = 0.065
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 7 GADPEAAPASAASAPGPA--------------PPVSAPAALPSSTAAENKASPAGTAGGP 52
G D P PGPA P ++ P P + P G AG P
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE---RGETGPPGPAGFP 812
Query: 53 GAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGA 91
GA G G R G P E+ P G A PP G+
Sbjct: 813 GAPGQNGEPGGKGER-GAPGEKGEGGP--PGVAGPPGGS 848
Score = 34.7 bits (78), Expect = 0.065
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 21 PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP-----------LAARAG 69
PGPA AP + P + + A G G PGA G GP LA G
Sbjct: 905 PGPAGNTGAPGS-PGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963
Query: 70 EPAERRGAAPVSAGGAAPPEGA 91
P R P G + GA
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGA 985
Score = 34.3 bits (77), Expect = 0.084
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 6 SGADPEAAPASAASAPGPAPPVSAPA-----------------------ALPSSTAAENK 42
SG E+ PA A APGPA AP P + A
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 43 ASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
PAG G G+ AG GP+ +G P + + G P G
Sbjct: 1121 PGPAGQQGAIGSPGPAGPRGPVGP-SGPPGKDGTSGHPGPIGPPGPRG 1167
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G GA P AA PG L S +K P GGPGA G GP
Sbjct: 706 GKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP----GGPGADGVPGKDGPR 761
Query: 65 A--------ARAGEPAER-RGAAPVSAGGAAP 87
AG+P ++ G AP G A P
Sbjct: 762 GPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGP 793
Score = 33.5 bits (75), Expect = 0.14
Identities = 29/104 (27%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 6 SGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA 65
+G E PA APGPA P A A P G G PG + G GP
Sbjct: 497 NGIPGEKGPAGERGAPGPAGPRGA-AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP-- 553
Query: 66 ARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKP 109
P + + G + P G GV P D P
Sbjct: 554 -----PGSQGESGRPGPPGPSGPRG--QPGVMGFPGPKGNDGAP 590
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/74 (36%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 21 PGPAPPVSAPAA--LPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERR--- 75
PGP P P + P G AG PGA GG G AG P ER
Sbjct: 635 PGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA---PGGKGD----AGAPGERGPPG 687
Query: 76 -GAAPVSAGGAAPP 88
AP GGA PP
Sbjct: 688 LAGAPGLRGGAGPP 701
Score = 33.1 bits (74), Expect = 0.19
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 6 SGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
+GA + PGP P A P S A+ + PAG+ G GA G GP
Sbjct: 317 AGARGNDGARGSDGQPGPPGPPGT-AGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373
Score = 32.7 bits (73), Expect = 0.25
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 8 ADPEAAPASAASA--PGPAPPVSAPAALPSSTAAENKASPA--GTAGGPGAGAAAGGTGP 63
A P +P PGPA AP + +P G G PG GG+GP
Sbjct: 791 AGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP 850
Query: 64 LAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKP 109
+ + +P G A P G P +NG+ P
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARGLPG----PPGSNGNPGP 892
Score = 32.0 bits (71), Expect = 0.42
Identities = 33/114 (28%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 7 GADPEAAPASAASAPG---PAPPVSAPAAL--PSSTAAENKASPAGTAGGPGAGAAAGGT 61
GA+ A APG PA P P A A P G AG PG GG
Sbjct: 474 GANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533
Query: 62 GPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
G + G P P S G PP +G P + +P V P
Sbjct: 534 G-MRGMPGSP-----GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP 581
Score = 31.2 bits (69), Expect = 0.71
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G+ P + A P +P + + A G G PG + GG G +
Sbjct: 339 GTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEM 398
Query: 65 AARAGEPAERRGAAPVSAGGAAPPEGAISNG 95
AG P AP G PP A +NG
Sbjct: 399 GP-AGIP-----GAPGLMGARGPPGPAGANG 423
Score = 31.2 bits (69), Expect = 0.71
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 18/80 (22%)
Query: 20 APGP--------APPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP-------- 63
APGP A ++ P +P + G +G PGA +G GP
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 64 LAARAGEPAERRGAAPVSAG 83
LA AGEP R P S G
Sbjct: 1003 LAGTAGEPG--RDGNPGSDG 1020
Score = 30.8 bits (68), Expect = 0.93
Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 14 PASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL--------A 65
PA PGP P S P S + G AG G G GP +
Sbjct: 175 PAGPPGPPGP-PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233
Query: 66 ARAGEPAERRGAAPVSAGGAA 86
R G P ER P G A
Sbjct: 234 GRPGRPGERGLPGPPGIKGPA 254
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 2 SCSGSGADPEAAPASAASAPG-PAPP-VSAPAALPSSTAAENKASPAGTAGGPGAGAAAG 59
S G G+D + P + G P PP S P P G G G G
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG 600
Query: 60 GTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G GP G P + P G P G
Sbjct: 601 GPGP----QGPPGKNGETGPQGPPGPTGPGG 627
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 21 PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAG--GTGPLAARAGEPAERRGAA 78
PGP AP A G AG PG G G L AG P G
Sbjct: 659 PGPKGDAGAPGA----------PGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKG 708
Query: 79 PVSAGGAAPPEGAISNGVYVLPSAANG 105
+AG PP A + G+ +P G
Sbjct: 709 --AAGPPGPPGAAGTPGLQGMPGERGG 733
Score = 29.3 bits (64), Expect = 2.7
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 17 AASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRG 76
A +PGPA A + P P+G G G G GP R
Sbjct: 1117 APGSPGPAGQQGAIGS-PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
Query: 77 AAPVSAGGAAPP 88
+P G PP
Sbjct: 1176 GSPGHPGQPGPP 1187
Score = 27.7 bits (60), Expect = 7.9
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 24 APPVSAPAALPSSTAAENKASPAGT---AGGPGAGAAAGGTGPLAARAGEPAERRGAAPV 80
AP + LP A P G G PG AAG G AR + P
Sbjct: 280 APGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Query: 81 SAGGAAPP 88
+AG P
Sbjct: 340 TAGFPGSP 347
Score = 27.7 bits (60), Expect = 7.9
Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTA--------GGPGAGAAA 58
G E P A PG + P P P E + SP G G PG +
Sbjct: 831 GEKGEGGPPGVAGPPGGSGPAGPPG--PQGVKGE-RGSPGGPGAAGFPGARGLPGPPGSN 887
Query: 59 GGTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G GP +G P + P GA G
Sbjct: 888 GNPGP-PGPSGSPGKDGPPGPAGNTGAPGSPG 918
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 43.9 bits (102), Expect = 1e-04
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 6 SGADP-EAAPASAASAPGPAPPVS--APAALPSSTAAENKASPAGTAGGPGAGAAAGGTG 62
+G DP EA P AA AP PP S AA S E KA AG + +A G G
Sbjct: 230 AGGDPQEAKPQEAAVAP-EKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPG 288
Query: 63 PLAARAGEPAERRGAAPVSAGGAAPPEGA 91
+ PAE AA S+ AAP + A
Sbjct: 289 APPEQEAAPAEEPAAAAASSACAAPSQEA 317
Score = 36.6 bits (83), Expect = 0.017
Identities = 37/124 (29%), Positives = 44/124 (35%), Gaps = 29/124 (23%)
Query: 16 SAASAPGPAPPVSAPAALPSSTAAENK----ASPAGTAGG-----------------PGA 54
+AA PG A S+P+ K ASPA G A
Sbjct: 14 AAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQANGSAPAADKEEPA 73
Query: 55 GAAAGGTGPLAARAGEP----AERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPV 110
A +G P AA GEP A GA+PV A E A P+AA G+
Sbjct: 74 AAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGS----PTAAEGEAASA 129
Query: 111 VSST 114
SST
Sbjct: 130 ASST 133
Score = 35.0 bits (79), Expect = 0.049
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 8 ADPEAAPASA-----ASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG 62
A P AA + A A+ PA PAA A ASP+ G A AAA G
Sbjct: 45 ASPAAAESGAKEELQANGSAPAADKEEPAA-----AGSGAASPSAAEKGEPAAAAAPEAG 99
Query: 63 PLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
PAE A P S AA E A + P A +G + TP
Sbjct: 100 ASPVEKEAPAEGEAAEPGSP-TAAEGEAASAASSTSSPKAEDGATPSPSNETP 151
Score = 32.3 bits (72), Expect = 0.32
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 4 SGSGADPE--AAPASAASAPGPAP---PVSAPAALPSSTAAENKASPAGTAGGPGAGAAA 58
S AD E AA S A++P A P +A A ++ E +A G A PG+ AA
Sbjct: 63 SAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAA 122
Query: 59 GGTGPLAARAGEPAERRGAAPVSAGGAAP 87
G AA + ++P + GA P
Sbjct: 123 EGEAASAASST-------SSPKAEDGATP 144
Score = 31.6 bits (70), Expect = 0.55
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGT 61
+ +GSGA A+P++A P +A A ++ E +A G A PG+ AA G
Sbjct: 73 AAAGSGA---ASPSAAEK----GEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGE 125
Query: 62 GPLAARA-GEPAERRGAAP 79
AA + P GA P
Sbjct: 126 AASAASSTSSPKAEDGATP 144
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 11 EAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGE 70
EA A AP A ++ AAE A+ A PG AAAG G A G+
Sbjct: 177 EAGEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEG---AAGGD 233
Query: 71 PAERR 75
P E +
Sbjct: 234 PQEAK 238
Score = 29.3 bits (64), Expect = 2.7
Identities = 31/120 (25%), Positives = 41/120 (34%), Gaps = 34/120 (28%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASP------------------- 45
G A+P + A+ A A S+P A +T + + +P
Sbjct: 111 GEAAEPGSPTAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFS 170
Query: 46 ----------AGTAGGP----GAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGA 91
G A P G AAGG AA AG + + AAP AA EGA
Sbjct: 171 FKKNKKEAGEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAP-GEEAAAGEEGA 229
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 9 DPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARA 68
+ +A A A++A AP + P A P AA + PA A A + P +
Sbjct: 266 EKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAE-EPAAAAASSACAAPSQEAQPECSPE 324
Query: 69 GEPAE 73
PAE
Sbjct: 325 APPAE 329
>gi|21264565 AT rich interactive domain 1A isoform a [Homo
sapiens]
Length = 2285
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 11 EAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGE 70
+ APA+A+S P PP P S + + AGG A AAA G + A AG+
Sbjct: 4 QVAPAAASSLGNPPPP-------PPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQ 56
Query: 71 PAERRGAAPVSAGGAAPPEGAISNG 95
+E P G +GA SNG
Sbjct: 57 ESEGPAVGPPQPLGKELQDGAESNG 81
Score = 37.7 bits (86), Expect = 0.008
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 2 SCSGSGADPEAAPASAASAPG-PAPPVSA----PAALPSSTAAENKASPAGTAGGPGAGA 56
S G G +P A P + G P ++ +A P A +SP G G GA A
Sbjct: 186 SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAA 245
Query: 57 AAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPL 116
AAG P P+ A+ S+ A GA+ G PSAA G P ++TP
Sbjct: 246 AAGSKPP-------PSSSASASSSSSSFAQQRFGAMGGGG---PSAAGGGT-PQPTATPT 294
Query: 117 VDFLMQLEDYTPTIPDAVTGY 137
++ L+ T P + GY
Sbjct: 295 LNQLL-------TSPSSARGY 308
Score = 37.4 bits (85), Expect = 0.010
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 8 ADPEAAPASAASAPGPAPPVSAPAAL------PSSTAAENKASPA------GTAGGPGAG 55
A P APA A S+P P S AA PSS+A+ + +S + G GG G
Sbjct: 221 AYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPS 280
Query: 56 AAAGGTGPLAAR------AGEPAERRGAAPVSAG--GAAPPEGAISNGVYVLPSAANGDV 107
AA GGT A P+ RG G P +G G + S G
Sbjct: 281 AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAA 340
Query: 108 KPVVSSTPLVDFLMQLEDYTPTIPDAVTG 136
++ Q + P P + G
Sbjct: 341 AAAAAAAAASGGAQQRSHHAPMSPGSSGG 369
Score = 34.3 bits (77), Expect = 0.084
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 11 EAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGE 70
EA +AA+A + A A S A P G GA + GG G A G
Sbjct: 34 EAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGG 93
Query: 71 PAERRGAAP--VSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
P GA P ++ G A P A++N + P G V + P
Sbjct: 94 P----GAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPP 136
Score = 31.6 bits (70), Expect = 0.55
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G P AA P P ++ PSS +GGP G A G +A+
Sbjct: 276 GGGPSAA-GGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMAS 334
Query: 67 RAGEPAERRGAAPVSAGGA 85
+ A AA ++GGA
Sbjct: 335 QCWGAAAAAAAAAAASGGA 353
Score = 30.4 bits (67), Expect = 1.2
Identities = 39/148 (26%), Positives = 52/148 (35%), Gaps = 21/148 (14%)
Query: 15 ASAASAPGPAPPV--SAPAALPSSTAAENKASPAGTAGG---PGAGA----AAGGTGPLA 65
A + PG P + S A P N P G GG G GA AA P A
Sbjct: 88 AGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPA 147
Query: 66 ARAGEPAERRGAAPVSAGGAAPPE---GAISNGVYVLPSAANGDVKPVVSSTPLVDFLMQ 122
G+P R +A +A A + G S G+ L S G ++P Q
Sbjct: 148 YGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGP--------Q 199
Query: 123 LEDYTPTIPD-AVTGYYLNRAGFEASDP 149
+ P+ YY NR+ + P
Sbjct: 200 QNSHDHGFPNHQYNSYYPNRSAYPPPAP 227
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLAAR 67
A S A GP P+ + + AG+ GGPGA + G GP A
Sbjct: 54 AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPAL 113
Query: 68 -----------AGEPAERRGAAPVSAGGAAPP 88
G ++ GA P SA A PP
Sbjct: 114 NNNLTEPPGGGGGGSSDGVGAPPHSAAAALPP 145
>gi|21264575 AT rich interactive domain 1A isoform b [Homo
sapiens]
Length = 2068
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 11 EAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGE 70
+ APA+A+S P PP P S + + AGG A AAA G + A AG+
Sbjct: 4 QVAPAAASSLGNPPPP-------PPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQ 56
Query: 71 PAERRGAAPVSAGGAAPPEGAISNG 95
+E P G +GA SNG
Sbjct: 57 ESEGPAVGPPQPLGKELQDGAESNG 81
Score = 37.7 bits (86), Expect = 0.008
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 2 SCSGSGADPEAAPASAASAPG-PAPPVSA----PAALPSSTAAENKASPAGTAGGPGAGA 56
S G G +P A P + G P ++ +A P A +SP G G GA A
Sbjct: 186 SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAA 245
Query: 57 AAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPL 116
AAG P P+ A+ S+ A GA+ G PSAA G P ++TP
Sbjct: 246 AAGSKPP-------PSSSASASSSSSSFAQQRFGAMGGGG---PSAAGGGT-PQPTATPT 294
Query: 117 VDFLMQLEDYTPTIPDAVTGY 137
++ L+ T P + GY
Sbjct: 295 LNQLL-------TSPSSARGY 308
Score = 37.4 bits (85), Expect = 0.010
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 8 ADPEAAPASAASAPGPAPPVSAPAAL------PSSTAAENKASPA------GTAGGPGAG 55
A P APA A S+P P S AA PSS+A+ + +S + G GG G
Sbjct: 221 AYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPS 280
Query: 56 AAAGGTGPLAAR------AGEPAERRGAAPVSAG--GAAPPEGAISNGVYVLPSAANGDV 107
AA GGT A P+ RG G P +G G + S G
Sbjct: 281 AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAA 340
Query: 108 KPVVSSTPLVDFLMQLEDYTPTIPDAVTG 136
++ Q + P P + G
Sbjct: 341 AAAAAAAAASGGAQQRSHHAPMSPGSSGG 369
Score = 34.3 bits (77), Expect = 0.084
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 11 EAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGE 70
EA +AA+A + A A S A P G GA + GG G A G
Sbjct: 34 EAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGG 93
Query: 71 PAERRGAAP--VSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
P GA P ++ G A P A++N + P G V + P
Sbjct: 94 P----GAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPP 136
Score = 31.6 bits (70), Expect = 0.55
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G P AA P P ++ PSS +GGP G A G +A+
Sbjct: 276 GGGPSAA-GGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMAS 334
Query: 67 RAGEPAERRGAAPVSAGGA 85
+ A AA ++GGA
Sbjct: 335 QCWGAAAAAAAAAAASGGA 353
Score = 30.4 bits (67), Expect = 1.2
Identities = 39/148 (26%), Positives = 52/148 (35%), Gaps = 21/148 (14%)
Query: 15 ASAASAPGPAPPV--SAPAALPSSTAAENKASPAGTAGG---PGAGA----AAGGTGPLA 65
A + PG P + S A P N P G GG G GA AA P A
Sbjct: 88 AGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPA 147
Query: 66 ARAGEPAERRGAAPVSAGGAAPPE---GAISNGVYVLPSAANGDVKPVVSSTPLVDFLMQ 122
G+P R +A +A A + G S G+ L S G ++P Q
Sbjct: 148 YGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGP--------Q 199
Query: 123 LEDYTPTIPD-AVTGYYLNRAGFEASDP 149
+ P+ YY NR+ + P
Sbjct: 200 QNSHDHGFPNHQYNSYYPNRSAYPPPAP 227
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGA----AAGGTGPLAAR 67
A S A GP P+ + + AG+ GGPGA + G GP A
Sbjct: 54 AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPAL 113
Query: 68 -----------AGEPAERRGAAPVSAGGAAPP 88
G ++ GA P SA A PP
Sbjct: 114 NNNLTEPPGGGGGGSSDGVGAPPHSAAAALPP 145
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/103 (35%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAG-------GPGAGAA 57
G G PAS A APG A +A AA A K +P AG GPGA A
Sbjct: 1334 GQGRPEAGRPASEARAPGLAAADAADAA-----RAGGKEAPRAAAGSELCRREGPGAAPA 1388
Query: 58 AGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLP 100
G G + A E R GA G PP GA + V P
Sbjct: 1389 FAGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAVAP 1431
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 7 GADPEAAPASAASA------PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
G PA AA A PGPA P PAG G PGA A G
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGP-------------PGPVGPAGGPGFPGAPGAKGE 376
Query: 61 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
GP AR E A+ P + G P + + G +P A P ++ P
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 431
Score = 37.4 bits (85), Expect = 0.010
Identities = 34/94 (36%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 21 PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAPV 80
PGPA P AP PAG G GA GG GP+ G P ER AP
Sbjct: 473 PGPAGPQGAPG-------------PAGEEGKRGARGEPGGVGPI----GPPGER--GAPG 513
Query: 81 SAG-----GAAPPEGAISN---GVYVLPSAANGD 106
+ G G A P+GA P ANGD
Sbjct: 514 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD 547
Score = 37.4 bits (85), Expect = 0.010
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKAS-----PAGTAGGPGAGAAAGGT 61
G E P A GP P A A K P G +G PG G T
Sbjct: 822 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT 881
Query: 62 GPLAARAGEPAERRGAAPVSAGGAAPP 88
GP AR + P +AG PP
Sbjct: 882 GPKGARGAQGPPGATGFPGAAGRVGPP 908
Score = 37.0 bits (84), Expect = 0.013
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 14 PASAASAPGPA--PPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEP 71
P A PG P V P A+ +A G G G+ G GP+ R G P
Sbjct: 271 PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR-GLP 329
Query: 72 AERRGAAPVSAGGAAPPEG 90
ER P A GA +G
Sbjct: 330 GERGRTGPAGAAGARGNDG 348
Score = 37.0 bits (84), Expect = 0.013
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
GA P + PGP P P+ A + P G AG PG AG G
Sbjct: 900 GAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG---- 954
Query: 67 RAGEPAERRGAAPVSAGGAAPPEG-AISNGVYVLP 100
GEP + P A G P+G A G+ LP
Sbjct: 955 EKGEPGDD---GPSGAEGPPGPQGLAGQRGIVGLP 986
Score = 37.0 bits (84), Expect = 0.013
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 7 GADPEAAPASAASAPGPAPP--------VSAPAALPSSTAAENKASPAGTAGGPGAGAAA 58
GA A P+ PGP P + P P + PAG G PG
Sbjct: 1152 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211
Query: 59 GGTGP---LAARAGEPAERRGAAPV 80
G GP ++A AG +G P+
Sbjct: 1212 GPPGPGIDMSAFAGLGPREKGPDPL 1236
Score = 36.2 bits (82), Expect = 0.022
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 7 GADPEAAPASAASAPG--PAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G D +A APG AP P P A P G G PG G GP
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP- 469
Query: 65 AARAGEPAERRGAAPVSAGGAAPPEG 90
GEP A P A G A EG
Sbjct: 470 ---KGEPGP---AGPQGAPGPAGEEG 489
Score = 36.2 bits (82), Expect = 0.022
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 7 GADPEAAPASAASAPGP-----APPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAG-- 59
G EA A APGP AP P + A P G G PGA G
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 60 GTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G+ G P P A G + P G
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 939
Score = 35.8 bits (81), Expect = 0.029
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G E+ +PGP P LP A AG G G AG GP+
Sbjct: 306 GVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP 361
Query: 67 RAGEPAERRGAAPVSAG--GAAPPEGA 91
G A AG GA PEGA
Sbjct: 362 AGGPGFPGAPGAKGEAGPTGARGPEGA 388
Score = 34.7 bits (78), Expect = 0.065
Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 7 GADPEAAPASAASAPGPA-----------PPVSAPAALPSSTAAE-NKASP-----AGTA 49
G E PA APGPA P P P A N+ P AG
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 527
Query: 50 GGPGAGAAAGGTGPLAA-----RAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAAN 104
G PG +G GP A R GEP G A P+G + PS A
Sbjct: 528 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVG------PSGAP 581
Query: 105 GD 106
G+
Sbjct: 582 GE 583
Score = 33.9 bits (76), Expect = 0.11
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 11 EAAPASAASAPGP--APPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA--A 66
E A APGP +P + P P G +G GA G GP
Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1119
Query: 67 RAGEPAER 74
AGEP ER
Sbjct: 1120 EAGEPGER 1127
Score = 33.1 bits (74), Expect = 0.19
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG---- 62
GA ++ P A PG + PA P P+G G PG AG G
Sbjct: 930 GARGDSGPPGRAGEPG----LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGL 985
Query: 63 ----------PLAARAGEPAERRGAAPVSAGGAAPP 88
L +GEP ++ AP ++G PP
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQ--GAPGASGDRGPP 1019
Score = 32.7 bits (73), Expect = 0.25
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 10 PEAAPAS--AASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP--LA 65
PE AP GP P PA PAG+AG GA G TGP A
Sbjct: 775 PEGAPGKDGGRGLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPA 833
Query: 66 ARAGEP---------AERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
AG P E+ A GA P+G PS A G P + P
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG---------PSGAPGPQGPTGVTGP 883
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G D +A A GP P+ P P A P G G PG G +GP+
Sbjct: 186 GFDEKAGGAQLGVMQGPMGPMG-PRGPPGPAGAPG---PQGFQGNPGEPGEPGVSGPMGP 241
Query: 67 RA-----GEPAERRGAA-PVSAGGAAPP 88
R G+P + A P AG PP
Sbjct: 242 RGPPGPPGKPGDDGEAGKPGKAGERGPP 269
Score = 32.3 bits (72), Expect = 0.32
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPA--------GTAGGPGAGAAA 58
GA EA P A G P P S A +P G+AG PG A
Sbjct: 372 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 431
Query: 59 G------------GTGPLA--ARAGEP--AERRG-AAPVSAGGAAPPEGA 91
G TGPL + GEP A +G P G A P+GA
Sbjct: 432 GFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA 481
Score = 32.3 bits (72), Expect = 0.32
Identities = 33/110 (30%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 17 AASAPGPAPPVS------APA-----ALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA 65
AA PGPA P AP LP + G G PG A G GP
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Query: 66 ARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
R G P ER A G P G P A+G P + P
Sbjct: 700 ER-GFPGER---GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 745
Score = 32.0 bits (71), Expect = 0.42
Identities = 30/97 (30%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 7 GADPEAAPASAASAPGPAPP--VSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
GA P PG P S PA P + P G G PG AAG GP
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG------PPGLQGMPGERGAAGIAGPK 764
Query: 65 AARAGEPAERRGAAPVSAGG------AAPPEGAISNG 95
R + AP GG PP A +NG
Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801
Score = 31.6 bits (70), Expect = 0.55
Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 7 GADPEAAPASAASAPG---PA--------PPVSAPAALPSSTAAENKASPAGTAGGPGAG 55
GA + P PG PA P P + + G G PGA
Sbjct: 1011 GASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1070
Query: 56 AAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGA 91
G GP A G+ +R A G + P GA
Sbjct: 1071 GPPGSPGP-AGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Score = 31.2 bits (69), Expect = 0.71
Identities = 23/85 (27%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 15 ASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA-----RAG 69
A+A+ PGP P + + P G AG G G G A R G
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 153
Query: 70 EPAERRGAAPVSAGGAAPPEGAISN 94
EP P G P G N
Sbjct: 154 EPGTPGNPGPPGPPGPPGPPGLGGN 178
Score = 31.2 bits (69), Expect = 0.71
Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G D E PGP P P L + AA+ AGG G G GP+
Sbjct: 150 GRDGEPGTPGNPGPPGPPGP-PGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 208
Query: 67 RA-----------------GEPAERRGAAPVSAGGAAPPEG 90
R GEP E + P+ G P G
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG 249
Score = 30.8 bits (68), Expect = 0.93
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 5 GSGADPEAAPASAASAP-GPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
G +P A AS GP PV P + + SP G G PG AAG G
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP-GADGPPGRDGAAGVKGD 1057
Query: 64 LAARAGEPAERRGAAPVSAGGAAP 87
A P S G A P
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGP 1081
Score = 30.8 bits (68), Expect = 0.93
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 14 PASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAE 73
P+ A GPA P S P P P G +G GA G GP R G E
Sbjct: 1147 PSGDQGASGPAGP-SGPRGPPG---------PVGPSGKDGANGIPGPIGPPGPR-GRSGE 1195
Query: 74 RRGAAPVSAGGAAPPEGAISNGV 96
A P G P G G+
Sbjct: 1196 TGPAGPPGNPGPPGPPGPPGPGI 1218
Score = 30.4 bits (67), Expect = 1.2
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 14 PASAASAPGPA-----------PPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG 62
P A APGP P VS P K G AG PG G G
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 270
Query: 63 PLAAR 67
P AR
Sbjct: 271 PQGAR 275
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAA-----ENKASPAGT---AGGPGAGA 56
G G P A A G V P S+ A + P G AG PGA
Sbjct: 784 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 843
Query: 57 AAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G G AG+ + P GA P+G
Sbjct: 844 QPGAKGE-QGEAGQKGDAGAPGPQGPSGAPGPQG 876
Score = 29.3 bits (64), Expect = 2.7
Identities = 24/93 (25%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 14 PASAASAPGPAPPVSAPAA-----LPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA--- 65
P A PG A P A LP A P G AG G G GP
Sbjct: 607 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 666
Query: 66 --------ARAGEPAERRGAAPVSAGGAAPPEG 90
G+P ++ A G P G
Sbjct: 667 LPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Score = 28.1 bits (61), Expect = 6.0
Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASP---AGTAGGPGAGAAAGGTGPLAARA 68
A P A PG P A T A P G +G PG G GP AR
Sbjct: 539 AGPKGANGDPGRPGEPGLPGAR-GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR- 596
Query: 69 GEPAERRGAAPVSAGG 84
G+P P A G
Sbjct: 597 GQPGVMGFPGPKGANG 612
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/60 (26%), Positives = 20/60 (33%)
Query: 4 SGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
+G+ P S P A S P + A P G G PG +G GP
Sbjct: 911 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP 970
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 7 GADPEAAPASAASA------PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
G PA AA A PGPA P PAG G PGA A G
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGP-------------PGPVGPAGGPGFPGAPGAKGE 307
Query: 61 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
GP AR E A+ P + G P + + G +P A P ++ P
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 362
Score = 37.4 bits (85), Expect = 0.010
Identities = 34/94 (36%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 21 PGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAPV 80
PGPA P AP PAG G GA GG GP+ G P ER AP
Sbjct: 404 PGPAGPQGAPG-------------PAGEEGKRGARGEPGGVGPI----GPPGER--GAPG 444
Query: 81 SAG-----GAAPPEGAISN---GVYVLPSAANGD 106
+ G G A P+GA P ANGD
Sbjct: 445 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD 478
Score = 37.4 bits (85), Expect = 0.010
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKAS-----PAGTAGGPGAGAAAGGT 61
G E P A GP P A A K P G +G PG G T
Sbjct: 753 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT 812
Query: 62 GPLAARAGEPAERRGAAPVSAGGAAPP 88
GP AR + P +AG PP
Sbjct: 813 GPKGARGAQGPPGATGFPGAAGRVGPP 839
Score = 37.0 bits (84), Expect = 0.013
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 14 PASAASAPGPA--PPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEP 71
P A PG P V P A+ +A G G G+ G GP+ R G P
Sbjct: 202 PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR-GLP 260
Query: 72 AERRGAAPVSAGGAAPPEG 90
ER P A GA +G
Sbjct: 261 GERGRTGPAGAAGARGNDG 279
Score = 37.0 bits (84), Expect = 0.013
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
GA P + PGP P P+ A + P G AG PG AG G
Sbjct: 831 GAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG---- 885
Query: 67 RAGEPAERRGAAPVSAGGAAPPEG-AISNGVYVLP 100
GEP + P A G P+G A G+ LP
Sbjct: 886 EKGEPGDD---GPSGAEGPPGPQGLAGQRGIVGLP 917
Score = 37.0 bits (84), Expect = 0.013
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 7 GADPEAAPASAASAPGPAPP--------VSAPAALPSSTAAENKASPAGTAGGPGAGAAA 58
GA A P+ PGP P + P P + PAG G PG
Sbjct: 1083 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142
Query: 59 GGTGP---LAARAGEPAERRGAAPV 80
G GP ++A AG +G P+
Sbjct: 1143 GPPGPGIDMSAFAGLGPREKGPDPL 1167
Score = 36.2 bits (82), Expect = 0.022
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 7 GADPEAAPASAASAPG--PAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G D +A APG AP P P A P G G PG G GP
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP- 400
Query: 65 AARAGEPAERRGAAPVSAGGAAPPEG 90
GEP A P A G A EG
Sbjct: 401 ---KGEPGP---AGPQGAPGPAGEEG 420
Score = 36.2 bits (82), Expect = 0.022
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 7 GADPEAAPASAASAPGP-----APPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAG-- 59
G EA A APGP AP P + A P G G PGA G
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 60 GTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G+ G P P A G + P G
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 870
Score = 35.8 bits (81), Expect = 0.029
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G E+ +PGP P LP A AG G G AG GP+
Sbjct: 237 GVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP 292
Query: 67 RAGEPAERRGAAPVSAG--GAAPPEGA 91
G A AG GA PEGA
Sbjct: 293 AGGPGFPGAPGAKGEAGPTGARGPEGA 319
Score = 34.7 bits (78), Expect = 0.065
Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 7 GADPEAAPASAASAPGPA-----------PPVSAPAALPSSTAAE-NKASP-----AGTA 49
G E PA APGPA P P P A N+ P AG
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 458
Query: 50 GGPGAGAAAGGTGPLAA-----RAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAAN 104
G PG +G GP A R GEP G A P+G + PS A
Sbjct: 459 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVG------PSGAP 512
Query: 105 GD 106
G+
Sbjct: 513 GE 514
Score = 33.9 bits (76), Expect = 0.11
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 11 EAAPASAASAPGP--APPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA--A 66
E A APGP +P + P P G +G GA G GP
Sbjct: 991 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1050
Query: 67 RAGEPAER 74
AGEP ER
Sbjct: 1051 EAGEPGER 1058
Score = 33.1 bits (74), Expect = 0.19
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG---- 62
GA ++ P A PG + PA P P+G G PG AG G
Sbjct: 861 GARGDSGPPGRAGEPG----LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGL 916
Query: 63 ----------PLAARAGEPAERRGAAPVSAGGAAPP 88
L +GEP ++ AP ++G PP
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQ--GAPGASGDRGPP 950
Score = 32.7 bits (73), Expect = 0.25
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 10 PEAAPAS--AASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP--LA 65
PE AP GP P PA PAG+AG GA G TGP A
Sbjct: 706 PEGAPGKDGGRGLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPA 764
Query: 66 ARAGEP---------AERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
AG P E+ A GA P+G PS A G P + P
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG---------PSGAPGPQGPTGVTGP 814
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G D +A A GP P+ P P A P G G PG G +GP+
Sbjct: 117 GFDEKAGGAQLGVMQGPMGPMG-PRGPPGPAGAPG---PQGFQGNPGEPGEPGVSGPMGP 172
Query: 67 RA-----GEPAERRGAA-PVSAGGAAPP 88
R G+P + A P AG PP
Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Score = 32.3 bits (72), Expect = 0.32
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPA--------GTAGGPGAGAAA 58
GA EA P A G P P S A +P G+AG PG A
Sbjct: 303 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 362
Query: 59 G------------GTGPLA--ARAGEP--AERRG-AAPVSAGGAAPPEGA 91
G TGPL + GEP A +G P G A P+GA
Sbjct: 363 GFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA 412
Score = 32.3 bits (72), Expect = 0.32
Identities = 33/110 (30%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 17 AASAPGPAPPVS------APA-----ALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA 65
AA PGPA P AP LP + G G PG A G GP
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Query: 66 ARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTP 115
R G P ER A G P G P A+G P + P
Sbjct: 631 ER-GFPGER---GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 676
Score = 32.0 bits (71), Expect = 0.42
Identities = 30/97 (30%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 7 GADPEAAPASAASAPGPAPP--VSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
GA P PG P S PA P + P G G PG AAG GP
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG------PPGLQGMPGERGAAGIAGPK 695
Query: 65 AARAGEPAERRGAAPVSAGG------AAPPEGAISNG 95
R + AP GG PP A +NG
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732
Score = 31.6 bits (70), Expect = 0.55
Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 7 GADPEAAPASAASAPG---PA--------PPVSAPAALPSSTAAENKASPAGTAGGPGAG 55
GA + P PG PA P P + + G G PGA
Sbjct: 942 GASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1001
Query: 56 AAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGA 91
G GP A G+ +R A G + P GA
Sbjct: 1002 GPPGSPGP-AGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Score = 31.2 bits (69), Expect = 0.71
Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 7 GADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAA 66
G D E PGP P P L + AA+ AGG G G GP+
Sbjct: 81 GRDGEPGTPGNPGPPGPPGP-PGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 139
Query: 67 RA-----------------GEPAERRGAAPVSAGGAAPPEG 90
R GEP E + P+ G P G
Sbjct: 140 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG 180
Score = 30.8 bits (68), Expect = 0.93
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 5 GSGADPEAAPASAASAP-GPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
G +P A AS GP PV P + + SP G G PG AAG G
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP-GADGPPGRDGAAGVKGD 988
Query: 64 LAARAGEPAERRGAAPVSAGGAAP 87
A P S G A P
Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGP 1012
Score = 30.8 bits (68), Expect = 0.93
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 14 PASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAE 73
P+ A GPA P S P P P G +G GA G GP R G E
Sbjct: 1078 PSGDQGASGPAGP-SGPRGPPG---------PVGPSGKDGANGIPGPIGPPGPR-GRSGE 1126
Query: 74 RRGAAPVSAGGAAPPEGAISNGV 96
A P G P G G+
Sbjct: 1127 TGPAGPPGNPGPPGPPGPPGPGI 1149
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/94 (24%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 1 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 60
+ C G + P PG + P P + P G G G A G
Sbjct: 21 LRCQGQDVR-QPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGP 79
Query: 61 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISN 94
G R GEP P G P G N
Sbjct: 80 RG----RDGEPGTPGNPGPPGPPGPPGPPGLGGN 109
Score = 30.4 bits (67), Expect = 1.2
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 14 PASAASAPGPA-----------PPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG 62
P A APGP P VS P K G AG PG G G
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 201
Query: 63 PLAAR 67
P AR
Sbjct: 202 PQGAR 206
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 5 GSGADPEAAPASAASAPGPAPPVSAPAALPSSTAA-----ENKASPAGT---AGGPGAGA 56
G G P A A G V P S+ A + P G AG PGA
Sbjct: 715 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 774
Query: 57 AAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEG 90
G G AG+ + P GA P+G
Sbjct: 775 QPGAKGE-QGEAGQKGDAGAPGPQGPSGAPGPQG 807
Score = 29.3 bits (64), Expect = 2.7
Identities = 24/93 (25%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 14 PASAASAPGPAPPVSAPAA-----LPSSTAAENKASPAGTAGGPGAGAAAGGTGPLA--- 65
P A PG A P A LP A P G AG G G GP
Sbjct: 538 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 597
Query: 66 --------ARAGEPAERRGAAPVSAGGAAPPEG 90
G+P ++ A G P G
Sbjct: 598 LPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Score = 28.1 bits (61), Expect = 6.0
Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 12 AAPASAASAPGPAPPVSAPAALPSSTAAENKASP---AGTAGGPGAGAAAGGTGPLAARA 68
A P A PG P A T A P G +G PG G GP AR
Sbjct: 470 AGPKGANGDPGRPGEPGLPGAR-GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR- 527
Query: 69 GEPAERRGAAPVSAGG 84
G+P P A G
Sbjct: 528 GQPGVMGFPGPKGANG 543
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/60 (26%), Positives = 20/60 (33%)
Query: 4 SGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGP 63
+G+ P S P A S P + A P G G PG +G GP
Sbjct: 842 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP 901
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAAL----PSSTAAENKASPAGTAGGPGAGAA 57
S S SG + A+++ AP PP S+ L P ++AA A+ T GG G G
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG-GGGGG 81
Query: 58 AGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPL 116
+GG G + G G + + AA G+ G + SA G V SSTP+
Sbjct: 82 SGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGI--SAGGG----VASSTPI 134
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAAL----PSSTAAENKASPAGTAGGPGAGAA 57
S S SG + A+++ AP PP S+ L P ++AA A+ T GG G G
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG-GGGGG 81
Query: 58 AGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPL 116
+GG G + G G + + AA G+ G + SA G V SSTP+
Sbjct: 82 SGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGI--SAGGG----VASSTPI 134
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 2 SCSGSGADPEAAPASAASAPGPAPPVSAPAAL----PSSTAAENKASPAGTAGGPGAGAA 57
S S SG + A+++ AP PP S+ L P ++AA A+ T GG G G
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG-GGGGG 81
Query: 58 AGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPL 116
+GG G + G G + + AA G+ G + SA G V SSTP+
Sbjct: 82 SGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGI--SAGGG----VASSTPI 134
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.1 bits (100), Expect = 2e-04
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 7 GADPEAAPA--SAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G P++ P +AP P P +AP A P A E++ P G A G+G A PL
Sbjct: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPP--AYESREGPRGRAESRGSGPAQPAHLPL 248
Query: 65 AARAGEPAE-----RRGAAPVSAGGAAP----PEGAISNGVYVLPSAANGDVKPVVSSTP 115
A PA R G AP S G P P+ A +G + GD SS P
Sbjct: 249 PGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATV-GLRRGDCDRAGSSQP 307
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.1 bits (100), Expect = 2e-04
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 7 GADPEAAPA--SAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPL 64
G P++ P +AP P P +AP A P A E++ P G A G+G A PL
Sbjct: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPP--AYESREGPRGRAESRGSGPAQPAHLPL 248
Query: 65 AARAGEPAE-----RRGAAPVSAGGAAP----PEGAISNGVYVLPSAANGDVKPVVSSTP 115
A PA R G AP S G P P+ A +G + GD SS P
Sbjct: 249 PGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATV-GLRRGDCDRAGSSQP 307
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,058,334
Number of Sequences: 37866
Number of extensions: 593688
Number of successful extensions: 16147
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 1201
Number of HSP's that attempted gapping in prelim test: 7466
Number of HSP's gapped (non-prelim): 7056
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.