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Search of human proteins with 5453930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo
sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo sa... 276 2e-75
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 54 2e-08
gi|25777707 zinc ribbon domain containing 1 [Homo sapiens] 33 0.043
gi|7657709 zinc ribbon domain containing 1 [Homo sapiens] 33 0.043
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 32 0.095
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 32 0.095
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 32 0.095
gi|38505156 transcription elongation factor A protein 2 isoform ... 31 0.21
gi|4507385 transcription elongation factor A protein 2 isoform a... 31 0.21
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 30 0.62
gi|166197671 adaptor-related protein complex 4, beta 1 subunit [... 28 1.4
gi|223005929 hypothetical protein LOC284071 [Homo sapiens] 28 2.3
gi|21361146 zinc finger protein 76 (expressed in testis) [Homo s... 28 2.3
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo... 27 4.0
gi|239755976 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 27 4.0
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 27 4.0
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 27 4.0
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 27 4.0
gi|5453838 Sjogren syndrome/scleroderma autoantigen 1 [Homo sapi... 27 4.0
gi|102468717 mediator complex subunit 13 [Homo sapiens] 27 5.2
gi|34485722 karyopherin alpha 3 [Homo sapiens] 27 5.2
gi|148612859 coiled-coil-helix-coiled-coil-helix domain containi... 27 5.2
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 26 6.8
gi|4504901 karyopherin alpha 4 [Homo sapiens] 26 6.8
gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo s... 26 6.8
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s... 26 6.8
>gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo
sapiens]
Length = 125
Score = 276 bits (707), Expect = 2e-75
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH 60
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
Sbjct: 1 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH 60
Query: 61 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG 120
EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
Sbjct: 61 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG 120
Query: 121 HRWTE 125
HRWTE
Sbjct: 121 HRWTE 125
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 54.3 bits (129), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
FC C N L +E + R +AC C Y N+ ++ E+ ++ +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKV--TNRKYPKLKEVDDVLGGAAAW 59
Query: 76 PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
+ T + C KC H A F Q + A++ M +Y C CGHRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|25777707 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 33.5 bits (75), Expect = 0.043
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
FC +C ++L P ++ + C ++ + + + + H++ + + +
Sbjct: 19 FCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPE 77
Query: 76 PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCT 115
P D C +CGH+ + A++ ++Y CT
Sbjct: 78 CQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT 116
>gi|7657709 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 33.5 bits (75), Expect = 0.043
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
FC +C ++L P ++ + C ++ + + + + H++ + + +
Sbjct: 19 FCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPE 77
Query: 76 PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCT 115
P D C +CGH+ + A++ ++Y CT
Sbjct: 78 CQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT 116
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 32.3 bits (72), Expect = 0.095
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 80 RTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRW 123
+T+ C KC K + Q + A++ M + VC CG+RW
Sbjct: 243 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRW 284
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 32.3 bits (72), Expect = 0.095
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 80 RTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRW 123
+T+ C KC K + Q + A++ M + VC CG+RW
Sbjct: 257 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRW 298
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 32.3 bits (72), Expect = 0.095
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 80 RTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRW 123
+T+ C KC K + Q + A++ M + VC CG+RW
Sbjct: 236 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRW 277
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 31.2 bits (69), Expect = 0.21
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 80 RTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRW 123
+T+ C KC K + Q + +++ M + VC CG+RW
Sbjct: 228 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRW 269
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 31.2 bits (69), Expect = 0.21
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 80 RTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRW 123
+T+ C KC K + Q + +++ M + VC CG+RW
Sbjct: 255 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRW 296
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 29.6 bits (65), Expect = 0.62
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 RFCQECNNMLYPKEDKENRILLYACRNCDYQQE 47
+FC C + + + E++++++ C C QQE
Sbjct: 138 KFCARCGGRVSLRSNNEDKVVMWVCNLCRKQQE 170
>gi|166197671 adaptor-related protein complex 4, beta 1 subunit
[Homo sapiens]
Length = 739
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 19 ECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTL 78
EC +ML R+L Y D Y + +DE+ +I+ DPTL
Sbjct: 490 ECQDML-------GRLLYYCIEEEKDMAVRDRGLFYYRLLLVGIDEVKRILCSPKSDPTL 542
Query: 79 PRTED 83
ED
Sbjct: 543 GLLED 547
>gi|223005929 hypothetical protein LOC284071 [Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 2.3
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 15 RFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI------ 68
R+ + + YP+ N+ L C N Q + T E D T++
Sbjct: 318 RYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDSKKLANGTPETPTVEADTYTKLFQVKPA 377
Query: 69 --------IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTA 116
I D Q+ T P+T H +K KEAVF +E ++ + C A
Sbjct: 378 NQKKMEETIPD-QQNFTFPKTTPHLTEKQFAKEAVFTADFGLTSEYGLKPHTACPA 432
>gi|21361146 zinc finger protein 76 (expressed in testis) [Homo
sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 112 YVCTAPHCGHRWTE 125
YVCT P CG R+TE
Sbjct: 315 YVCTVPGCGKRFTE 328
>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
sapiens]
Length = 598
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 13 GIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIY 54
G+R C+ C K + + A +NC + N C Y
Sbjct: 276 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQY 317
>gi|239755976 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 4 DGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVD 63
D + PGF+G+R CQ + ++ + AC C + SC +V + ++ D
Sbjct: 102 DREFLPGFLGLRSCQRA------ESGRQGNMHWGAC--CLQPSVYEKSCQHVTEAVYQQD 153
Query: 64 E 64
E
Sbjct: 154 E 154
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 13 GIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIY 54
G+R C+ C K + + A +NC + N C Y
Sbjct: 316 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQY 357
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 13 GIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIY 54
G+R C+ C K + + A +NC + N C Y
Sbjct: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQY 346
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 13 GIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIY 54
G+R C+ C K + + A +NC + N C Y
Sbjct: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQY 346
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 13 GIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIY 54
G+R C+ C K + + A +NC + N C Y
Sbjct: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQY 346
>gi|5453838 Sjogren syndrome/scleroderma autoantigen 1 [Homo
sapiens]
Length = 199
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 17 CQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDP 76
C +C +L +DK+ +I AC+ D + DN + + E +A S+ P
Sbjct: 53 CADCGTILL--QDKQRKIYCVACQELDSDVDKDNPALNAQAALSQARE--HQLASASELP 108
Query: 77 TLPRTEDHP 85
R P
Sbjct: 109 LGSRPAPQP 117
>gi|102468717 mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 4 DGTYEPGFVGIRFCQECNNMLYP-KEDKENRILLYACRNCDYQQEADNSCIYVNKITHEV 62
D EP F + L+P K+D++N + R + + ++ V ++HE
Sbjct: 688 DAEQEPKIDPYAFVEGDEEFLFPDKKDRQN-----SEREAGKKHKVEDGTSSVTVLSHEE 742
Query: 63 DELTQIIADVSQDPTLPRTEDHP 85
D ++ + QD P + P
Sbjct: 743 DAMSLFSPSIKQDAPRPTSHARP 765
>gi|34485722 karyopherin alpha 3 [Homo sapiens]
Length = 521
Score = 26.6 bits (57), Expect = 5.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 VNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSH 100
V I DE TQ++ + P HP +K +KEAV+F S+
Sbjct: 308 VGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKI-NKEAVWFLSN 352
>gi|148612859 coiled-coil-helix-coiled-coil-helix domain
containing 4 isoform 1 [Homo sapiens]
Length = 142
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 45 QQEADNSCIYVNKITHEVDELTQIIADVSQDP 76
+QE + I+V K HE +++AD DP
Sbjct: 5 RQEGKDRIIFVTKEDHETPSSAELVADDPNDP 36
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 26.2 bits (56), Expect = 6.8
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 28 EDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDEL-TQIIADVSQDPTLPRTEDHPC 86
E+ +R L + Q+ NS Y + E+ L T I AD+ DP PR P
Sbjct: 298 EENPHRFDLLVRTQNSWTQDGMNSLTY-QLLARELGPLYTNITADIGTDPRGPRAPSGPR 356
Query: 87 QKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHR 122
G +A F+ + R + TA H R
Sbjct: 357 YPPGSSQA--FRQEMLQRRPPARPGPLSTANHTALR 390
>gi|4504901 karyopherin alpha 4 [Homo sapiens]
Length = 521
Score = 26.2 bits (56), Expect = 6.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 VNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSH 100
V I DE TQ++ + P HP +K +KEAV+F S+
Sbjct: 308 VGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKI-NKEAVWFLSN 352
>gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo
sapiens]
Length = 683
Score = 26.2 bits (56), Expect = 6.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 22 NMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRT 81
NM P E K N ++ C E NS + ++ TH+ D +Q P L T
Sbjct: 83 NMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVID--THKP-------KDSNQTPHLLLT 133
Query: 82 EDHP 85
ED P
Sbjct: 134 EDDP 137
>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
sapiens]
Length = 682
Score = 26.2 bits (56), Expect = 6.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 22 NMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRT 81
NM P E K N ++ C E NS + ++ TH+ D +Q P L T
Sbjct: 82 NMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVID--THKP-------KDSNQTPHLLLT 132
Query: 82 EDHP 85
ED P
Sbjct: 133 EDDP 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,600,879
Number of Sequences: 37866
Number of extensions: 228887
Number of successful extensions: 540
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 30
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.