Guide to the Human Genome
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Name: LOC100293442 Sequence: fasta or formatted (380aa) NCBI GI: 239755976
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         26           2
 C cysteine            3.9         15           2
 D aspartate           2.4          9           1
 E glutamate           5.8         22           2
 F phenylalanine       2.9         11           1
 G glycine             9.5         36           3
 H histidine           2.6         10           1
 I isoleucine          0.5          2           1
 K lysine              4.7         18           2
 L leucine            13.4         51           2
 M methionine          1.6          6           1
 N asparagine          3.7         14           2
 P proline             8.2         31           1
 Q glutamine           3.4         13           2
 R arginine            5.3         20           2
 S serine              9.5         36           2
 T threonine           6.3         24           2
 V valine              5.3         20           1
 W tryptophan          2.1          8           2
 Y tyrosine            2.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291310          0.172   PREDICTED: hypothetical protein XP_002347422 
LOC100287306          0.172   PREDICTED: hypothetical protein XP_002343273 
LOC100291925          0.008   PREDICTED: hypothetical protein XP_002345110 
LOC100292682          0.008   PREDICTED: hypothetical protein 
LOC100291392          0.008   PREDICTED: hypothetical protein XP_002347851 
LOC100290022          0.008   PREDICTED: hypothetical protein XP_002346854 
LOC100287042          0.008   PREDICTED: hypothetical protein XP_002343584 
LOC100286972          0.008   PREDICTED: hypothetical protein XP_002342692 
PHF21B                0.007   PHD finger protein 21B isoform 1 
HINFP                 0.007   MBD2 (methyl-CpG-binding protein)-interacting zinc f...
HINFP                 0.007   MBD2 (methyl-CpG-binding protein)-interacting zinc f...
PAPOLA                0.007   poly(A) polymerase alpha 
PAPOLB                0.007   poly(A) polymerase beta (testis specific) 
PAPOLG                0.007   poly(A) polymerase gamma 
ANKFY1                0.005   ankyrin repeat and FYVE domain containing 1 isoform...
PROX2                 0.005   prospero homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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