Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FLJ35848 Sequence: fasta or formatted (825aa) NCBI GI: 223005929
Description:

hypothetical protein LOC284071

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         36           2
 C cysteine            2.2         18           2
 D aspartate           5.6         46           2
 E glutamate           6.1         50           2
 F phenylalanine       4.7         39           1
 G glycine             5.6         46           2
 H histidine           3.0         25           2
 I isoleucine          2.9         24           2
 K lysine              6.1         50           2
 L leucine             7.8         64           2
 M methionine          1.8         15           2
 N asparagine          7.6         63           2
 P proline             6.2         51           2
 Q glutamine           5.6         46           2
 R arginine            4.6         38           2
 S serine             10.3         85           3
 T threonine           6.8         56           2
 V valine              3.9         32           2
 W tryptophan          0.7          6           1
 Y tyrosine            4.2         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284071 
FOXO3                 0.005   forkhead box O3A 
FOXO3                 0.005   forkhead box O3A 
DBF4                  0.005   activator of S phase kinase 
DSPP                  0.004   dentin sialophosphoprotein preproprotein 
GPR156                0.004   G protein-coupled receptor 156 
FHOD3                 0.004   formin homology 2 domain containing 3 
C3orf20               0.004   hypothetical protein LOC84077 
C14orf4               0.004   chromosome 14 open reading frame 4 
CUL4B                 0.004   cullin 4B isoform 2 
CUL4B                 0.004   cullin 4B isoform 1 
DUSP27                0.004   dual specificity phosphatase 27 
NPAS2                 0.003   neuronal PAS domain protein 2 
CMYA5                 0.003   cardiomyopathy associated 5 
CCDC55                0.003   coiled-coil domain containing 55 isoform 1 
DDX42                 0.003   DEAD box polypeptide 42 protein 
DDX42                 0.003   DEAD box polypeptide 42 protein 
BAT2L                 0.003   HLA-B associated transcript 2-like 
WDR76                 0.003   WD repeat domain 76 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press