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Search of human proteins with 5453682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453682 hexamethylene bis-acetamide inducible 1 [Homo
sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453682 hexamethylene bis-acetamide inducible 1 [Homo sapiens] 740 0.0
gi|21389407 hexamthylene bis-acetamide inducible 2 [Homo sapiens] 205 6e-53
gi|28274705 family with sequence similarity 9, member A [Homo sa... 46 5e-05
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 44 2e-04
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 43 4e-04
gi|217330641 IWS1 homolog [Homo sapiens] 42 9e-04
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 42 0.001
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 42 0.001
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 41 0.002
gi|58761537 hypothetical protein LOC84437 [Homo sapiens] 40 0.003
gi|221139761 zinc finger protein 853 [Homo sapiens] 40 0.004
gi|148746195 trichohyalin [Homo sapiens] 40 0.004
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.006
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.006
gi|45505178 cancer antigen 1 [Homo sapiens] 39 0.006
gi|5454104 transcriptional adaptor 3-like isoform a [Homo sapiens] 39 0.006
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 39 0.006
gi|27734911 DAZ interacting protein 1-like [Homo sapiens] 39 0.006
gi|34577114 cytomatrix protein p110 [Homo sapiens] 39 0.007
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 39 0.007
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 38 0.012
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 38 0.012
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 38 0.012
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 38 0.012
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 38 0.012
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 38 0.016
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 38 0.016
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 38 0.016
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 38 0.016
gi|115529449 upstream binding transcription factor, RNA polymera... 38 0.016
>gi|5453682 hexamethylene bis-acetamide inducible 1 [Homo sapiens]
Length = 359
Score = 740 bits (1910), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG 60
MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
Sbjct: 1 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG 60
Query: 61 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ 120
PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
Sbjct: 61 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ 120
Query: 121 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE 180
PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
Sbjct: 121 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE 180
Query: 181 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD 240
KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
Sbjct: 181 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD 240
Query: 241 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR 300
FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
Sbjct: 241 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR 300
Query: 301 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD 359
MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
Sbjct: 301 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD 359
>gi|21389407 hexamthylene bis-acetamide inducible 2 [Homo sapiens]
Length = 286
Score = 205 bits (521), Expect = 6e-53
Identities = 127/290 (43%), Positives = 160/290 (55%), Gaps = 31/290 (10%)
Query: 73 PLQTQACPESSCLREGEKGQNGDDS--------SAGGDFPPPAEVEPTPEAELLAQPCH- 123
P QT ES E K S +GG P +E E E LA
Sbjct: 5 PNQTACNAESPVALEEAKTSGAPGSPQTPPERHDSGGSLPLTPRMESHSEDEDLAGAVGG 64
Query: 124 ---DSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE 180
+S + + +P E L +KKHRRRPSK+KRHW+PY +L+W EK++ DE
Sbjct: 65 LGWNSRSPRTQSPGGCSAEA------VLARKKHRRRPSKRKRHWRPYLELSWAEKQQRDE 118
Query: 181 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD 240
+QS RASR+R EMFAKGQPVAPYNTTQFLM+D D EEP+L +
Sbjct: 119 RQSQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGS--------- 169
Query: 241 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR 300
G E G SDG G EF ++DFSETYER+HTESLQ SKQEL+++YLELEK LS+
Sbjct: 170 ---SGESEAGDSDGRGRAHGEFQRKDFSETYERFHTESLQGRSKQELVRDYLELEKRLSQ 226
Query: 301 MEDENNRLRLESKRLGGDDAR-VRELELELDRLRAENLQLLTENELHRQQ 349
E+E RL+ G R V EL E+ RLR EN +L EN++ ++
Sbjct: 227 AEEETRRLQQLQACTGQQSCRQVEELAAEVQRLRTENQRLRQENQMWNRE 276
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 150 KKKHRRRPSKKKRHWKPYYKLTWE---EKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTT 206
KKK +R + RH + + E EK+K DE + A+ AE A + A
Sbjct: 157 KKKQLKRQKRDYRHTRKLLNVLKEYIAEKQKDDEAEEAEAAAAAAEAAAAAEAAAAAAEV 216
Query: 207 QFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRD 266
+ D+ ++E+ + + + +++ EEGG E+G G GG+G E + +
Sbjct: 217 IVVEDEEEEEKEE-----------EEEKEEEEEEGEEEGGGEEGEEGGGGGEGEETEEEE 265
Query: 267 FSETYERYHTESLQNMSKQELIKEYLELEK 296
E E ++E IK + E +K
Sbjct: 266 EEEEEE----------EEEEQIKAFQEKQK 285
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 43.9 bits (102), Expect = 2e-04
Identities = 58/257 (22%), Positives = 90/257 (35%), Gaps = 35/257 (13%)
Query: 7 SEYQHQPQTSNCTGAAAVQE---ELNPERPPGAE-ERVPEEDS----RWQSRAFPQLGGR 58
+E + QP++ A +E EL P AE E PE + + A P+L G
Sbjct: 2153 AEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGV 2212
Query: 59 PGPEGEGSLESQP-----PPLQTQACPESSCLREGEKG-------QNGDDSSAGGDFPPP 106
PE E + +P P + +A PES +GEK +G A P
Sbjct: 2213 EAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPV 2272
Query: 107 AEVEPTPEAELLAQPCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKP 166
E PTP H S+ G P++ WG ++ + H ++
Sbjct: 2273 PEDRPTPPPSPGGDTPHQRPGSQTG-PSSSRASSWGNCWQKDSENDHVLGDTRSP----- 2326
Query: 167 YYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNT---TQFLMDDHDQEEPDLKTG 223
+ K +A+R+ E Q AP + Q + +D +E
Sbjct: 2327 ------DAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDLQEDQALGS 2380
Query: 224 LYSKRAAAKSDDTSDDD 240
L A ++D DD
Sbjct: 2381 LAPTEAVGRADGFGQDD 2397
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 7 SEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGS 66
+E Q QP+ S + +EE PE V E + A P+ PE EG
Sbjct: 1950 AEGQTQPE-SEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGE 2008
Query: 67 L-----ESQPPPLQTQACPESSCLREGEKGQ--NGDDSSAGGDFPPPAEVEPTPEAELLA 119
+ E+QP +A P+S EGE+ Q G+ GD P ++ PEAE A
Sbjct: 2009 MQEAEEEAQPESDGVEAQPKS----EGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEA 2064
Query: 120 Q 120
Q
Sbjct: 2065 Q 2065
Score = 38.1 bits (87), Expect = 0.012
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 17 NCTGAAAVQEELNPERPPGAEE-RVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQ 75
N G AA + +P + GAE PE + Q P+ G PE EG + Q
Sbjct: 1813 NLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQ----PESEGVEAPEAEGDAQEAEGEAQ 1868
Query: 76 TQACPESSCLREGEKGQNGDD---SSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGA 132
++ + EGE +D A + P +E PEAE AQP E + A
Sbjct: 1869 PESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQP----ETESVEA 1924
Query: 133 PAAGGEEE 140
GE+E
Sbjct: 1925 LETEGEDE 1932
Score = 35.0 bits (79), Expect = 0.10
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 56 GGRPGP-EGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPE 114
GG P + +G+ + P + +A PES + E GD A G+ P +E PE
Sbjct: 1821 GGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEA--EGDAQEAEGEAQPESEDVEAPE 1878
Query: 115 AELLAQPCHDSEASKLGAPAAGGEEEWGQQQRQLG-KKKHRRRPSKKKRHWKPYYKLTWE 173
AE AQP E+ + P E EW Q G + + ++ + + E
Sbjct: 1879 AEGEAQP----ESEDVETP----EAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGE 1930
Query: 174 EKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPD---LKTGLYSKRAA 230
++ + + ++ A E + QP + +Q ++ E D L+ + ++ A
Sbjct: 1931 DEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAE 1990
Query: 231 AKSDDTSDD 239
++ S+D
Sbjct: 1991 GEAQPESED 1999
Score = 32.7 bits (73), Expect = 0.52
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 25 QEELNPERPPGAEERVPEEDSRWQS---RAFPQLGGRPGPEGEGSLESQPPPLQTQACPE 81
Q E + P AEE E + Q A P+ E EG E+QP +A PE
Sbjct: 2049 QPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEG--EAQPESEGVEA-PE 2105
Query: 82 SSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEEE 140
+ E +K + + G+ P +E PEAE AQP E+ + A A GE +
Sbjct: 2106 AE--GEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQP----ESEGVEAQDAEGEAQ 2158
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 58 RPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAEL 117
+ GPEG E+ L+ + PE + E + G P + E A
Sbjct: 1378 KEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASA 1437
Query: 118 LAQPCHDSEASKLGAPAAGGEE 139
A+PC PA G EE
Sbjct: 1438 SAEPC----------PAEGTEE 1449
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 43.1 bits (100), Expect = 4e-04
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 70 QPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPP----AEVEPTPEAELLAQPCHDS 125
Q PPL P SS L G ++ G PPP A P P + A+ H S
Sbjct: 649 QQPPLG----PSSSLLSLPGLKSRGSRAAGGAPSPPPPVRRASAGPAPGPVVTAEGLHPS 704
Query: 126 EASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLR 185
S G G + ++Q + +K+ + R ++K K K E +K+ E++
Sbjct: 705 LPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQE 764
Query: 186 ASRIRAEMFAKGQPVA 201
R + E A+G+ ++
Sbjct: 765 KERQKQEKKAQGRKLS 780
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 42.0 bits (97), Expect = 9e-04
Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 22/238 (9%)
Query: 68 ESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEA 127
ES+ PP + E+ E K + D S G P ++ E + +P D ++
Sbjct: 277 ESEDPPRNQASDSENE---ELPKPRVSDSESEGPQKGPASDSETEDASRHKQKPESDDDS 333
Query: 128 SKLGAPAAGGEEEWGQQQR-----QLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQ 182
+ GE+ Q + +KK S+++ H K +EK+ +EK
Sbjct: 334 DRENK----GEDTEMQNDSFHSDSHMDRKKFHSSDSEEEEHKKQKMDSDEDEKEGEEEKV 389
Query: 183 SLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFM 242
+ R + + ++ + + A + DD D + K+G K A+ S++ + +
Sbjct: 390 AKRKAAVLSDSEDEEKASAKKSRVVSDADDSDSDAVSDKSGKREKTIASDSEEEAGKELS 449
Query: 243 EEGGEEDG--GSDGMGGDGSEFLQRDF--------SETYERYHTESLQNMSKQELIKE 290
++ EE GSD G+ E L D E + ++ E L+ + +KE
Sbjct: 450 DKKNEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKGETQVKE 507
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 37/202 (18%)
Query: 152 KHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMD 211
K R RP K+ + EE K + Q + + + + +GQ +
Sbjct: 192 KPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE----------E 241
Query: 212 DHDQEEPDLKTG---LYSKRA-AAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDF 267
D ++EPD K G + SKR AK+ TS D EEG +++G GG R+F
Sbjct: 242 DKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGG-------RNF 294
Query: 268 SETYER------YHTESLQNMSKQELIKEYLELEKCLSRMEDENNR---LRLESKRLGGD 318
+ R + E+ KQE E +E E+ + +DE + ++E KR
Sbjct: 295 QTAHRRNMLKGQHEKEAADRKRKQE---EQMETEQ---QNKDEGKKPEVKKVEKKRETSM 348
Query: 319 DARVRELELEL-DRLRAENLQL 339
D+R++ + E+ + L+ +NL +
Sbjct: 349 DSRLQRIHAEIKNSLKIDNLDV 370
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 37/202 (18%)
Query: 152 KHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMD 211
K R RP K+ + EE K + Q + + + + +GQ +
Sbjct: 192 KPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE----------E 241
Query: 212 DHDQEEPDLKTG---LYSKRA-AAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDF 267
D ++EPD K G + SKR AK+ TS D EEG +++G GG R+F
Sbjct: 242 DKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGG-------RNF 294
Query: 268 SETYER------YHTESLQNMSKQELIKEYLELEKCLSRMEDENNR---LRLESKRLGGD 318
+ R + E+ KQE E +E E+ + +DE + ++E KR
Sbjct: 295 QTAHRRNMLKGQHEKEAADRKRKQE---EQMETEQ---QNKDEGKKPEVKKVEKKRETSM 348
Query: 319 DARVRELELEL-DRLRAENLQL 339
D+R++ + E+ + L+ +NL +
Sbjct: 349 DSRLQRIHAEIKNSLKIDNLDV 370
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 40.8 bits (94), Expect = 0.002
Identities = 53/209 (25%), Positives = 78/209 (37%), Gaps = 36/209 (17%)
Query: 29 NPERPPGAEERVPEEDSRWQSRAFPQLGGRP--GPEG--EGSLESQPPPLQTQACPESSC 84
N PPG + + A P G R G EG + LE + LQT E
Sbjct: 362 NNPLPPGGDPSSAPGPALLGEAAAPGNGQRSLVGSEGLSKEQLEHRERSLQTLRDIERLL 421
Query: 85 LREGE-----KGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCH-----------DSEAS 128
LR GE KG G G PPA+ P P+ A P S+
Sbjct: 422 LRSGETEPFLKGPPGGAGEGG----PPAQAPPPPQQPPTAPPSGLKKYEEPLQSMISQTQ 477
Query: 129 KLGAPAAGGEE-------EWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEK 181
LG P E + GQQ + ++ + + ++ W+ + +EEK++ +E+
Sbjct: 478 SLGGPPLEHEVPGHPPGGDMGQQMNMMIQRLGQDSLTPEQVAWRKLQEEYYEEKRRKEEQ 537
Query: 182 QSLRASRIRAEMFAKG-----QPVAPYNT 205
L SR +M G P PY++
Sbjct: 538 IGLHGSRPLQDMMGMGGMMVRGPPPPYHS 566
>gi|58761537 hypothetical protein LOC84437 [Homo sapiens]
Length = 345
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 289 KEYLELEKCLSRMEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQ 348
K+ LELEK R++ E RL++E +RL + R+R L++E +RL+ E +L E E R
Sbjct: 209 KQKLELEK--RRLDIEAERLQVEKERLQIEKERLRHLDMEHERLQLEKERLQIEREKLRL 266
Query: 349 Q 349
Q
Sbjct: 267 Q 267
Score = 35.8 bits (81), Expect = 0.061
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 279 LQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQ 338
L N+ KQ+L E L+ R++ E RL++E +RL D L+LE +RL+ E +
Sbjct: 204 LVNIEKQKLELEKRRLDIEAERLQVEKERLQIEKERLRHLDMEHERLQLEKERLQIEREK 263
Query: 339 L 339
L
Sbjct: 264 L 264
Score = 29.3 bits (64), Expect = 5.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 281 NMSKQELIKEYLELEKCLSRMED--------ENNRLRLESKRLGGDDARVRELELELDRL 332
N K L E + EK + + +D E RL+LE RL +L++E +RL
Sbjct: 270 NSEKPSLENELGQGEKSMLQPQDIETEKLKLERERLQLEKDRLQFLKFESEKLQIEKERL 329
Query: 333 RAENLQLLTENELHRQ 348
+ E +L + E H Q
Sbjct: 330 QVEKDRLRIQKEGHLQ 345
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/301 (19%), Positives = 127/301 (42%), Gaps = 18/301 (5%)
Query: 59 PGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELL 118
PG G + P +T E CL E G G D+ +GG ++ E P+ E
Sbjct: 7 PGNRGLTARMEVGPATETFVL-ELQCL---EDGGPGPDTLSGGSGGSESQEEEEPQ-ERN 61
Query: 119 AQPCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRH---WKPYYKLTWEEK 175
+ P + ++ +GA E GQ++ QL + + + P ++ +H +P L +++
Sbjct: 62 SSPQRPAVSAPVGASEIAEETRPGQRELQLQQLEQQPEPQQQPQHEQLQQPQPHLELQQQ 121
Query: 176 KKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDD 235
+ D +Q L S+++ E K Q V L H Q++ + +R + +
Sbjct: 122 PQQDGQQQL--SQLQQE---KHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQ 176
Query: 236 TSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQEL--IKEYLE 293
E+ + + LQ+ + ++ + + + +Q+ +E L+
Sbjct: 177 LQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQ 236
Query: 294 LEKCLSRMEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAP 353
++ L ++ + +L+ + L A++++ LE + + + LL + E +QQ++
Sbjct: 237 QQQQLLLLQQQG---QLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQ 293
Query: 354 L 354
L
Sbjct: 294 L 294
Score = 30.0 bits (66), Expect = 3.3
Identities = 55/321 (17%), Positives = 123/321 (38%), Gaps = 35/321 (10%)
Query: 57 GRPGPE----GEGSLESQPP--PLQTQACPESSCLRE-------GEKGQNGDDSSAGGDF 103
G PGP+ G G ESQ P + + P+ + E+ + G
Sbjct: 35 GGPGPDTLSGGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETRPGQRELQLQQL 94
Query: 104 PPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRR--RPSKKK 161
E + P+ E L QP E + P G+++ Q Q++ + H + +P +
Sbjct: 95 EQQPEPQQQPQHEQLQQPQPHLELQQ--QPQQDGQQQLSQLQQEKHQSVHHQELKPELQL 152
Query: 162 RHWKPYYK--LTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPD 219
H + + E+++ +++ L+ + + + + Q + + QE+
Sbjct: 153 MHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQEQ-- 210
Query: 220 LKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGM-----GGDGSEFLQRDFSETYERY 274
L ++ + + F ++ + + G + LQ+ ++ ++
Sbjct: 211 ----LQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQL 266
Query: 275 HTESLQNMSKQELIKEYLELEK-----CLSRMEDENNRLRLESKRLGGDDARVRELELEL 329
+ + +Q L+++ +L++ L + +++ + +L+ L ++ ELEL
Sbjct: 267 LEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQQQLQPPPLEPEEEEEVELELMP 326
Query: 330 DRLRAENLQLLTENELHRQQE 350
L +E EL RQQE
Sbjct: 327 VDLGSEQELEQQRQELERQQE 347
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 10/213 (4%)
Query: 139 EEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQ 198
+E GQQ+RQ +K R ++ + ++K E+Q +R + Q
Sbjct: 1543 QERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQERKFMEDEQ 1602
Query: 199 PVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGD 258
+ Q L + D++ + + L + D F+EE E
Sbjct: 1603 QLRRQEGQQQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFLEE--EPQLRRQEREQQ 1660
Query: 259 GSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGD 318
R F E + Q + +QE +++ E E+ L R E E L+ +
Sbjct: 1661 LRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQLRRQERERKFLQ--------E 1712
Query: 319 DARVRELELELDRLRAENLQLLTENELHRQQER 351
+ ++R ELE E L+ TE E R+QER
Sbjct: 1713 EQQLRRQELERKFREEEQLRQETEQEQLRRQER 1745
Score = 38.5 bits (88), Expect = 0.009
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 138 EEEWGQQQRQLGKKK-HRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAK 196
EEE Q++ QL +++ +RR + +R ++ +L EE++ E+Q R R + +
Sbjct: 1143 EEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEEEQLLREEQEKRRQE-RERQYRE 1201
Query: 197 GQPVAPYNTTQFLMDDHD------QEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDG 250
+ + Q D+ Q EP+ + + + K + +E+ D
Sbjct: 1202 EEELQRQKRKQRYRDEDQRSDLKWQWEPEKENAVRDNKVYCKGRENEQFRQLEDSQLRDR 1261
Query: 251 GSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQEL-IKEYLELEKCLSRMEDENNRLR 309
S + LQ E ER + + +++ E +LE+ + +R
Sbjct: 1262 QS-------QQDLQHLLGEQQERDREQERRRWQQRDRHFPEEEQLEREEQKEAKRRDRKS 1314
Query: 310 LESKRLGGDDARVRELELELDRLRAENLQLLTENELH--RQQER 351
E K+L ++ + E DR E QLL E E R+QER
Sbjct: 1315 QEEKQLLREEREEKRRRQETDRKFREEEQLLQEREEQPLRRQER 1358
Score = 36.6 bits (83), Expect = 0.036
Identities = 71/345 (20%), Positives = 130/345 (37%), Gaps = 51/345 (14%)
Query: 25 QEELNPERPPGAEER-VPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESS 83
+ +L E E+R +PEE+ + Q R R E E L+ Q Q +
Sbjct: 795 ERQLRAEERQQREQRFLPEEEEKEQRR-------RQRREREKELQFLEEEEQLQRRERAQ 847
Query: 84 CLREGEKGQNGDDSSAGGDFPPP--------AEVEPTPEAELLAQPCHDSEASKLGAPAA 135
L+E E G D E L A+P + K
Sbjct: 848 QLQEEEDGLQEDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQ 907
Query: 136 GGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFA 195
EEE +++R+ +RR +++R ++ +L EE++ E++ R + R +
Sbjct: 908 EEEEELQREERE------KRRRQEQERQYREEEQLQQEEEQLLREEREKRRRQERERQYR 961
Query: 196 KGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGM 255
K + + Q L ++ ++ + Y + + + ++ + E E
Sbjct: 962 KDKKL-QQKEEQLLGEEPEKRRRQEREKKYREEEELQQE---EEQLLREERE-------- 1009
Query: 256 GGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMED--ENNRLRLESK 313
+R E +Y + +++L++E E + R E L+ E +
Sbjct: 1010 --------KRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEELQQEEE 1061
Query: 314 RLGGDDARVR---ELELEL---DRLRAENLQLLTEN-ELHRQQER 351
+L G++ R ELE + + L+ E QLL E E R+QER
Sbjct: 1062 QLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQER 1106
Score = 36.6 bits (83), Expect = 0.036
Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 55/221 (24%)
Query: 138 EEEWGQQQRQL-GKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAK 196
++E Q++ QL +++ +RR +++R ++ +L EE++ E+ R +R R E+ +
Sbjct: 1023 KDELQQEEEQLLREEREKRRLQERERQYREEEELQQEEEQLLGEE---RETRRRQELERQ 1079
Query: 197 GQPVAPYNTTQFLMDDHDQ---EEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSD 253
Y + L + +Q EEP+ + +R + ++ ++
Sbjct: 1080 ------YRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEE------------- 1120
Query: 254 GMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESK 313
E+ E + +QEL ++Y E E+ ++E LR E +
Sbjct: 1121 ------------------EQLLREEREKRRRQELERQYREEEEV---QQEEEQLLREEPE 1159
Query: 314 RLGGDDARVRELE---LELDRLRAENLQLLTENELHRQQER 351
+ R +ELE E + L+ E QLL E + R+QER
Sbjct: 1160 K-----RRRQELERQYREEEELQQEEEQLLREEQEKRRQER 1195
Score = 34.7 bits (78), Expect = 0.14
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 15/216 (6%)
Query: 138 EEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKG 197
EEE Q+R+ ++ RR + ++ + + + +K +E+Q LR + +
Sbjct: 1340 EEEQLLQERE---EQPLRRQERDRKFREEELRHQEQGRKFLEEEQRLRRQERERKFLKEE 1396
Query: 198 QPVAPYNTTQFLMDDHD----QEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSD 253
Q + Q L D D +EE L ++ + + + EE+
Sbjct: 1397 QQLRCQEREQQLRQDRDRKFREEEQQLSRQERDRKFREEEQQVRRQERERKFLEEEQQL- 1455
Query: 254 GMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESK 313
+ R F E + Q + +QE +++LE E+ L R E + + R +
Sbjct: 1456 ------RQERHRKFREEEQLLQEREEQQLHRQERDRKFLEEEQQLRRQE-RDRKFREQEL 1508
Query: 314 RLGGDDARVRELELELDRLRAENLQLLTENELHRQQ 349
R + + E E +L R + + L E +L RQ+
Sbjct: 1509 RSQEPERKFLEEEQQLHRQQRQRKFLQEEQQLRRQE 1544
Score = 33.5 bits (75), Expect = 0.30
Identities = 41/218 (18%), Positives = 89/218 (40%), Gaps = 13/218 (5%)
Query: 137 GEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAK 196
G EE QQ+R+ ++ R ++++ W+ + +E++K E++ R ++ E
Sbjct: 222 GREEKQQQRRE---RQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEE---- 274
Query: 197 GQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMG 256
+ + + + QEE + L ++ + + + EE E+ +
Sbjct: 275 EEQLRKLERQELRRE--RQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQE 332
Query: 257 GDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLG 316
+ L+R+ E E+ + +++ ++ E E+ ++ E R + R
Sbjct: 333 ERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRREQQLRRE 392
Query: 317 GDDARVRELELELDRLRAENL----QLLTENELHRQQE 350
R ++L E R + L QL E +L R+QE
Sbjct: 393 QQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQE 430
Score = 33.5 bits (75), Expect = 0.30
Identities = 43/209 (20%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 143 QQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAP 202
++++ LG++ +RR ++++ ++ +L EE++ E++ R + + K
Sbjct: 969 KEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRK------ 1022
Query: 203 YNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEF 262
D+ QEE L KR + + ++ EE +E+ + + G+ E
Sbjct: 1023 -------KDELQQEEEQLLREEREKRRLQERERQYREE--EELQQEE---EQLLGEERET 1070
Query: 263 LQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDARV 322
+R E +Y E +++L++E E EK R E R E + L ++ ++
Sbjct: 1071 RRR--QELERQYRKEEELQQEEEQLLRE--EPEK---RRRQERERQCREEEELQQEEEQL 1123
Query: 323 RELELELDRLRAENLQLLTENELHRQQER 351
E E R + Q E E+ +++E+
Sbjct: 1124 LREEREKRRRQELERQYREEEEVQQEEEQ 1152
Score = 32.7 bits (73), Expect = 0.52
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 4/218 (1%)
Query: 138 EEEWGQQQRQL-GKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAK 196
EEE Q++ QL G+++ RR + +R ++ +L EE++ E+ R + R E +
Sbjct: 1053 EEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQER-ERQCR 1111
Query: 197 GQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMG 256
+ Q L ++ ++ Y + + ++ + EE +
Sbjct: 1112 EEEELQQEEEQLLREEREKRRRQELERQYREEEEVQQEE--EQLLREEPEKRRRQELERQ 1169
Query: 257 GDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLG 316
E LQ++ + + Q +Q +E L+ +K R DE+ R L+ +
Sbjct: 1170 YREEEELQQEEEQLLREEQEKRRQERERQYREEEELQRQKRKQRYRDEDQRSDLKWQWEP 1229
Query: 317 GDDARVRELELELDRLRAENLQLLTENELHRQQERAPL 354
+ VR+ ++ E + L +++L +Q + L
Sbjct: 1230 EKENAVRDNKVYCKGRENEQFRQLEDSQLRDRQSQQDL 1267
Score = 31.6 bits (70), Expect = 1.2
Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 38/248 (15%)
Query: 138 EEEWGQQQRQ---LGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMF 194
E++ +Q+R L +++ RR + ++ + + E+K +E+Q L + + +
Sbjct: 1475 EQQLHRQERDRKFLEEEQQLRRQERDRKFREQELRSQEPERKFLEEEQQLHRQQRQRKFL 1534
Query: 195 AKGQPVAPYNTTQFLMDDHDQ---EEPDLKTGLYSKRAAAKSDDTS-------------D 238
+ Q + Q D D+ EE L+ ++ + + D +
Sbjct: 1535 QEEQQLRRQERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQE 1594
Query: 239 DDFMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCL 298
FME+ ++ +G E R F E + Q + +QE +++LE E L
Sbjct: 1595 RKFMEDE-QQLRRQEGQQQLRQE-RDRKFREDEQLLQEREEQQLHRQERDRKFLEEEPQL 1652
Query: 299 SRME-------DENNRLRLESK----------RLGGDDARVRELELELDRLRAENLQLLT 341
R E D + + R E + R D + RE E +L R E L
Sbjct: 1653 RRQEREQQLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQLRRQERERKFLQE 1712
Query: 342 ENELHRQQ 349
E +L RQ+
Sbjct: 1713 EQQLRRQE 1720
Score = 30.0 bits (66), Expect = 3.3
Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 138 EEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKG 197
+ E +++ QL K++ RR + KR + E++ K +E + L R + +
Sbjct: 568 KREQEERRDQLLKREEERRQQRLKREQEERL----EQRLKREEVERLEQEERREQRLKRE 623
Query: 198 QPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGG 257
+P Q L+ +QEE ++ + + + E EE
Sbjct: 624 EPEE--ERRQQLLKSEEQEERR------QQQLRREQQERREQRLKREEEEERL------- 668
Query: 258 DGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGG 317
+ L+R+ E + +E IK + + E + + ++ S+
Sbjct: 669 --EQRLKREHEEERREQELAEEEQEQARERIKSRIPKWQWQLESEADARQSKVYSRPRKQ 726
Query: 318 DDARVRELELELDRLRAENLQLLTENELHRQQE 350
+ R R+ + E R R LQ E HRQQ+
Sbjct: 727 EGQRRRQEQEEKRRRRESELQWQEEERAHRQQQ 759
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 39.3 bits (90), Expect = 0.006
Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 27/297 (9%)
Query: 26 EELNPERPPGAEERVPEEDSR--WQSRAFP----QLGGRPGPEGEGSLESQPPPLQTQAC 79
+E +PE+ AEE PE++S R F Q G GS E P +
Sbjct: 450 KESSPEKE--AEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKT 507
Query: 80 PESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEE 139
++ C G ++ DD + + EV PT E+E E G E
Sbjct: 508 LKNDCEENGLAKESEDDLNKESE----EEVGPTKESEEDDSEKESDEDCSEKQSEDGSER 563
Query: 140 EWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQP 199
E+ + + K S+K+ H K E + E + + ++ E ++ +
Sbjct: 564 EFEENGLE---KDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSERE- 619
Query: 200 VAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDG 259
D D +E + + Y K +SD+ D+++ +E G E GD
Sbjct: 620 -----------FDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDA 668
Query: 260 SEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLG 316
E L + + + + ++L ++ EK ED + +L +S G
Sbjct: 669 DEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERG 725
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 39.3 bits (90), Expect = 0.006
Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 27/297 (9%)
Query: 26 EELNPERPPGAEERVPEEDSR--WQSRAFP----QLGGRPGPEGEGSLESQPPPLQTQAC 79
+E +PE+ AEE PE++S R F Q G GS E P +
Sbjct: 450 KESSPEKE--AEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKT 507
Query: 80 PESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEE 139
++ C G ++ DD + + EV PT E+E E G E
Sbjct: 508 LKNDCEENGLAKESEDDLNKESE----EEVGPTKESEEDDSEKESDEDCSEKQSEDGSER 563
Query: 140 EWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQP 199
E+ + + K S+K+ H K E + E + + ++ E ++ +
Sbjct: 564 EFEENGLE---KDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSERE- 619
Query: 200 VAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDG 259
D D +E + + Y K +SD+ D+++ +E G E GD
Sbjct: 620 -----------FDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDA 668
Query: 260 SEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLG 316
E L + + + + ++L ++ EK ED + +L +S G
Sbjct: 669 DEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERG 725
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 39.3 bits (90), Expect = 0.006
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 272 ERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDARVREL------ 325
ERY TE Q K + + +YLE++K LS+ E+E RL+ K L A +L
Sbjct: 286 ERYMTEMQQ---KNKSVSQYLEMDKTLSKKEEEVERLQQLKKELEKATASALDLLKREKE 342
Query: 326 --ELELDRLRAENLQLLTENELHRQQERAPLSK 356
E E L+ E +L EN RQ+ ++ L K
Sbjct: 343 AQEQEFLSLQEEFQKLEKENLEERQKLKSRLEK 375
>gi|5454104 transcriptional adaptor 3-like isoform a [Homo sapiens]
Length = 432
Score = 39.3 bits (90), Expect = 0.006
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 17/207 (8%)
Query: 157 PSKKKRHWK-----PYYKLTWEEKKKFDE-KQSLRASRIRAEMFAKGQPVAPYNTTQF-- 208
P + H+K +Y W ++ +E K RA+ + + P+ +T
Sbjct: 180 PEDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDA 239
Query: 209 ----LMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQ 264
H+Q E G ++R + + ME+ D G DG+
Sbjct: 240 LLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSP 299
Query: 265 RDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDARVRE 324
R+ ++ + HT+SL++ K+ELI + L LE ED + + E ++ A ++
Sbjct: 300 RNQNKPFSVPHTKSLESRIKEELIAQGL-LESEDRPAEDSEDEVLAELRK---RQAELKA 355
Query: 325 LELELDRLRAENLQLLTENELHRQQER 351
L +R + +L L + E+ RQ+ R
Sbjct: 356 LSAH-NRTKKHDLLRLAKEEVSRQELR 381
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 39.3 bits (90), Expect = 0.006
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 216 EEPDLKTGLYSKRAAAKSDDTSDD----------DFMEEGGEEDGGSDGMGGDGSEFLQR 265
+EPDL G + + D D EEG EE+ +G + SE +
Sbjct: 330 KEPDLGGGEEDEGLEGEPDGVEDTGAWGGVSQMGSVHEEGSEEEEEEEGDRDEDSEEREL 389
Query: 266 DFSETYERYHTESLQNMSKQELIKEYLELEKCL----SRMEDENNRLRLESKRLGGDDAR 321
E R SL ++EL+ + E E+ + +E R L + + +
Sbjct: 390 PEEEEIPRRRASSLAESFEEELLAQLEEYEQVILDFQFNLEATRTRYSLATGVIASLQQQ 449
Query: 322 VRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD 359
V E +L ++ EN L E RQQ +A KF +
Sbjct: 450 VDFQETQLRKINTENETLQKELRERRQQLQAMTDKFSN 487
>gi|27734911 DAZ interacting protein 1-like [Homo sapiens]
Length = 767
Score = 39.3 bits (90), Expect = 0.006
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 102 DFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKK 161
+F A+ T E +L A H SKLG+ EEW +Q R+L + R + +K
Sbjct: 277 EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQAREL--QALREKTEIQK 334
Query: 162 RHWKPYYKLTWEE-----KKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDH--- 213
WK K EE K+ +E Q L+AS + + A Q +T + + +
Sbjct: 335 TEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARI 394
Query: 214 --DQEEPDLK------TGLYSKRAAAKSDDTSDDDFMEEGGEE 248
QEE G++ A +++ S ++ ME+ +E
Sbjct: 395 IASQEEMIQSLSLRKVEGIHKVPKAVDTEEDSPEEEMEDSQDE 437
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 38.9 bits (89), Expect = 0.007
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 161 KRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDL 220
K W P K +++ ++++ R S ++ +M + T + D + + DL
Sbjct: 183 KTFWSPELK----KERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQALQDELRTQRDL 238
Query: 221 KTGLYSKRAAAKSD----DTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSETYE-RYH 275
L + ++ + ++++F E D + + FL R E E R
Sbjct: 239 NHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKEL------FLLRKTLEEMELRIE 292
Query: 276 TESLQNMSKQELIKEYLELEKCLS----RMEDENNRLRLESKRLGGDDARVRELELELDR 331
T+ ++ E IK+ LE+ + +ED+N R R R+ +++V LE+ LD+
Sbjct: 293 TQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTR----RMAEAESQVSHLEVILDQ 348
Query: 332 LRAENLQLLTENELHRQQERAP 353
EN+ L ELHR+ + P
Sbjct: 349 KEKENIHL--REELHRRSQLQP 368
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 16 SNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQP---- 71
+NC+ QE ++ +P ++E ++ SR +S A P+ P P+ + +SQP
Sbjct: 97 ANCSPEDPCQETVS--KPEVSKEATADQGSRLESAAPPEPAPEPAPQPDPRPDSQPTPKP 154
Query: 72 ---PPLQTQACPESSCLRE--GEKGQNG 94
P L TQ P L E GEK +NG
Sbjct: 155 ALQPELPTQEDPTPEILSESVGEKQENG 182
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGE 89
P PPG E+ E P G+PG +GE P P R+GE
Sbjct: 277 PPGPPGGEKGEKGEQGE------PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG-RDGE 329
Query: 90 KGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEE 139
KGQ GD G PP V P P + E +G P GE+
Sbjct: 330 KGQKGDTGPPG----PPGLVIPRPGTGITI-----GEKGNIGLPGLPGEK 370
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEV 109
R FP + G PG G PP P GE+GQ GD+ G P P +
Sbjct: 373 RGFPGIQGPPGLPG--------PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Query: 110 EPTPEAELLAQP 121
+ P A L P
Sbjct: 425 DGQPGAPGLPGP 436
Score = 32.0 bits (71), Expect = 0.88
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 57 GRPGPEGEGSLESQPPP---LQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTP 113
G G +GE L+ P P + Q P ++G++G GD G PP P P
Sbjct: 224 GPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG---PPGIRGPPGP 280
Query: 114 EAELLAQPCHDSEASKLGAPAAGGE 138
+ E K G P GE
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 53 PQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPP 106
P L G PGP G G QP P + P + G GQ G+ G P P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGI-PGPAGQKGEPGQPGFGNPGP 1194
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/93 (29%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFP----- 104
R FP L G PG G E P G +GQ GDD G P
Sbjct: 50 RGFPGLEGHPGLPGFPGPEGPP----------------GPRGQKGDDGIPGPPGPKGIRG 93
Query: 105 PPAEVEPTPEAELLAQPCHDSEASKLGAPAAGG 137
PP L P HD G P G
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNG 126
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.012
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 30 PERPPGAEERV--PEEDSRWQSRAFPQLGGRPGPEGEGSL-------------ESQPPPL 74
P++PP + + +E + + AFP P P + ES P P
Sbjct: 1000 PQKPPPSYFAIVRDKEPAEPPAGAFPGFPSPPAPPAAAATAVGPPLCRLAFEDESPPAPA 1059
Query: 75 Q-TQACPESSCLREGEKGQNGDDSSAGGDFP---PP--AEVEPTPEAELLAQPCHDSEAS 128
+ ++ PES L G G AGG P PP A P P +L P ++
Sbjct: 1060 RWPRSDPESQPLLGPGAGGAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSEDSE 1119
Query: 129 KLGAPAAGGEEEW 141
LG + GG E W
Sbjct: 1120 SLGGASLGGLEPW 1132
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 38.1 bits (87), Expect = 0.012
Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 28/212 (13%)
Query: 105 PPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEEEWGQQQR-------QLGKKKHR--- 154
P AE E T ++L P + A GAPAA G + ++ + GK+K +
Sbjct: 498 PRAEKEDT---QMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKE 554
Query: 155 RRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAK-GQPVAPYNTTQFLMDDH 213
RR + K H++P K ++KKK + E + P+ + +
Sbjct: 555 RREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSM 614
Query: 214 DQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSETYER 273
E KT Y A S D S ++ + +D ++ + G E+ Q S +E
Sbjct: 615 FTE----KTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYNQDFDSTNFEE 670
Query: 274 YHTESLQNMSKQELIKEYLELEKCLSRMEDEN 305
E E+ +C+ M++EN
Sbjct: 671 SQDED----------DALNEIVRCICEMDEEN 692
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGE 89
P PPG E+ E P G+PG +GE P P R+GE
Sbjct: 277 PPGPPGGEKGEKGEQGE------PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG-RDGE 329
Query: 90 KGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEE 139
KGQ GD G PP V P P + E +G P GE+
Sbjct: 330 KGQKGDTGPPG----PPGLVIPRPGTGITI-----GEKGNIGLPGLPGEK 370
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEV 109
R FP + G PG G PP P GE+GQ GD+ G P P +
Sbjct: 373 RGFPGIQGPPGLPG--------PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Query: 110 EPTPEAELLAQP 121
+ P A L P
Sbjct: 425 DGQPGAPGLPGP 436
Score = 32.0 bits (71), Expect = 0.88
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 57 GRPGPEGEGSLESQPPP---LQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTP 113
G G +GE L+ P P + Q P ++G++G GD G PP P P
Sbjct: 224 GPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG---PPGIRGPPGP 280
Query: 114 EAELLAQPCHDSEASKLGAPAAGGE 138
+ E K G P GE
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 53 PQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPP 106
P L G PGP G G QP P + P + G GQ G+ G P P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGI-PGPAGQKGEPGQPGFGNPGP 1194
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/93 (29%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFP----- 104
R FP L G PG G E P G +GQ GDD G P
Sbjct: 50 RGFPGLEGHPGLPGFPGPEGPP----------------GPRGQKGDDGIPGPPGPKGIRG 93
Query: 105 PPAEVEPTPEAELLAQPCHDSEASKLGAPAAGG 137
PP L P HD G P G
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNG 126
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGE 89
P PPG E+ E P G+PG +GE P P R+GE
Sbjct: 277 PPGPPGGEKGEKGEQGE------PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG-RDGE 329
Query: 90 KGQNGDDSSAGGDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGEE 139
KGQ GD G PP V P P + E +G P GE+
Sbjct: 330 KGQKGDTGPPG----PPGLVIPRPGTGITI-----GEKGNIGLPGLPGEK 370
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEV 109
R FP + G PG G PP P GE+GQ GD+ G P P +
Sbjct: 373 RGFPGIQGPPGLPG--------PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Query: 110 EPTPEAELLAQP 121
+ P A L P
Sbjct: 425 DGQPGAPGLPGP 436
Score = 32.0 bits (71), Expect = 0.88
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 57 GRPGPEGEGSLESQPPP---LQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTP 113
G G +GE L+ P P + Q P ++G++G GD G PP P P
Sbjct: 224 GPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG---PPGIRGPPGP 280
Query: 114 EAELLAQPCHDSEASKLGAPAAGGE 138
+ E K G P GE
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 53 PQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPP 106
P L G PGP G G QP P + P + G GQ G+ G P P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGI-PGPAGQKGEPGQPGFGNPGP 1194
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/93 (29%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 50 RAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFP----- 104
R FP L G PG G E P G +GQ GDD G P
Sbjct: 50 RGFPGLEGHPGLPGFPGPEGPP----------------GPRGQKGDDGIPGPPGPKGIRG 93
Query: 105 PPAEVEPTPEAELLAQPCHDSEASKLGAPAAGG 137
PP L P HD G P G
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNG 126
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPL--QTQACPESSCLRE 87
P+ PPG+ V + + P G PGP GE + + +A P +
Sbjct: 1250 PQGPPGSVGSVGGVGEKGE----PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1305
Query: 88 GEKGQNGDDSSAG--------GDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGE 138
G KG GDD G GD PP E P + + D + + G P GE
Sbjct: 1306 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1364
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 20 GAAAVQEELNPERPPGAEERVPEE-----DSRWQSRAFPQLGGRPGPEGEGSLESQPPPL 74
G+ + E P PPG + V D R + G+ G EG P P+
Sbjct: 1150 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1209
Query: 75 QTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
Q P GEKG+NGD G PP
Sbjct: 1210 GLQGLPGPP----GEKGENGDVGPMGPPGPP 1236
Score = 33.9 bits (76), Expect = 0.23
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 41 PEEDSRWQSRAFPQLGGRPGPEGEGSLESQ--------PPPLQTQACPESSCLREGEKGQ 92
P E R P G PG +G+G + PP L P+ + G GQ
Sbjct: 1476 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1535
Query: 93 NGDDSSAG--GDFPPPAEV-EPTP 113
GD G G PP EV +P P
Sbjct: 1536 KGDSGLPGPPGSPGPPGEVIQPLP 1559
Score = 33.1 bits (74), Expect = 0.40
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
G+PGP G E+ PP + P + EG +G+ G AG + PP
Sbjct: 1354 GQPGPPGPSG-EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 49 SRAFPQLGGRPGPEGEGSLESQPPPLQTQAC--PESSCLREGEKGQNGDDSSAGGDFPPP 106
S FP G G +G + +P P + P S G G+ G ++GGD PP
Sbjct: 866 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 925
Query: 107 AEVEPTPE 114
E P+
Sbjct: 926 PPGERGPQ 933
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAE 116
G PGP+G + +P P Q P G +G G G PP E P +
Sbjct: 685 GPPGPKGNMGPQGEPGPPGQQGNP-------GPQGLPGPQGPIG----PPGEKGPQGKPG 733
Query: 117 LLAQPCHDSEASKLGAPAAGGEE 139
L P D G GE+
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEK 756
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPL--QTQACPESSCLRE 87
P+ PPG+ V + + P G PGP GE + + +A P +
Sbjct: 1199 PQGPPGSVGSVGGVGEKGE----PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1254
Query: 88 GEKGQNGDDSSAG--------GDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGE 138
G KG GDD G GD PP E P + + D + + G P GE
Sbjct: 1255 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1313
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 20 GAAAVQEELNPERPPGAEERVPEE-----DSRWQSRAFPQLGGRPGPEGEGSLESQPPPL 74
G+ + E P PPG + V D R + G+ G EG P P+
Sbjct: 1099 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1158
Query: 75 QTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
Q P GEKG+NGD G PP
Sbjct: 1159 GLQGLPGPP----GEKGENGDVGPMGPPGPP 1185
Score = 33.9 bits (76), Expect = 0.23
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 41 PEEDSRWQSRAFPQLGGRPGPEGEGSLESQ--------PPPLQTQACPESSCLREGEKGQ 92
P E R P G PG +G+G + PP L P+ + G GQ
Sbjct: 1425 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1484
Query: 93 NGDDSSAG--GDFPPPAEV-EPTP 113
GD G G PP EV +P P
Sbjct: 1485 KGDSGLPGPPGSPGPPGEVIQPLP 1508
Score = 33.1 bits (74), Expect = 0.40
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
G+PGP G E+ PP + P + EG +G+ G AG + PP
Sbjct: 1303 GQPGPPGPSG-EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 49 SRAFPQLGGRPGPEGEGSLESQPPPLQTQAC--PESSCLREGEKGQNGDDSSAGGDFPPP 106
S FP G G +G + +P P + P S G G+ G ++GGD PP
Sbjct: 815 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 874
Query: 107 AEVEPTPE 114
E P+
Sbjct: 875 PPGERGPQ 882
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAE 116
G PGP+G + +P P Q P G +G G G PP E P +
Sbjct: 634 GPPGPKGNMGPQGEPGPPGQQGNP-------GPQGLPGPQGPIG----PPGEKGPQGKPG 682
Query: 117 LLAQPCHDSEASKLGAPAAGGEE 139
L P D G GE+
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEK 705
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 30 PERPPGAEERVPEEDSRWQSRAFPQLGGRPGPEGEGSLESQPPPL--QTQACPESSCLRE 87
P+ PPG+ V + + P G PGP GE + + +A P +
Sbjct: 1238 PQGPPGSVGSVGGVGEKGE----PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1293
Query: 88 GEKGQNGDDSSAG--------GDFPPPAEVEPTPEAELLAQPCHDSEASKLGAPAAGGE 138
G KG GDD G GD PP E P + + D + + G P GE
Sbjct: 1294 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1352
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 20 GAAAVQEELNPERPPGAEERVPEE-----DSRWQSRAFPQLGGRPGPEGEGSLESQPPPL 74
G+ + E P PPG + V D R + G+ G EG P P+
Sbjct: 1138 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1197
Query: 75 QTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
Q P GEKG+NGD G PP
Sbjct: 1198 GLQGLPGPP----GEKGENGDVGPMGPPGPP 1224
Score = 33.9 bits (76), Expect = 0.23
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 41 PEEDSRWQSRAFPQLGGRPGPEGEGSLESQ--------PPPLQTQACPESSCLREGEKGQ 92
P E R P G PG +G+G + PP L P+ + G GQ
Sbjct: 1464 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1523
Query: 93 NGDDSSAG--GDFPPPAEV-EPTP 113
GD G G PP EV +P P
Sbjct: 1524 KGDSGLPGPPGSPGPPGEVIQPLP 1547
Score = 33.1 bits (74), Expect = 0.40
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPP 105
G+PGP G E+ PP + P + EG +G+ G AG + PP
Sbjct: 1342 GQPGPPGPSG-EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 49 SRAFPQLGGRPGPEGEGSLESQPPPLQTQAC--PESSCLREGEKGQNGDDSSAGGDFPPP 106
S FP G G +G + +P P + P S G G+ G ++GGD PP
Sbjct: 854 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 913
Query: 107 AEVEPTPE 114
E P+
Sbjct: 914 PPGERGPQ 921
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 57 GRPGPEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAE 116
G PGP+G + +P P Q P G +G G G PP E P +
Sbjct: 673 GPPGPKGNMGPQGEPGPPGQQGNP-------GPQGLPGPQGPIG----PPGEKGPQGKPG 721
Query: 117 LLAQPCHDSEASKLGAPAAGGEE 139
L P D G GE+
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEK 744
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 37.7 bits (86), Expect = 0.016
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 18/145 (12%)
Query: 13 PQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRW-----------QSRAFPQLGGRPGP 61
P T+ ++ +P+ P A PE+ + SR+ P + G+P P
Sbjct: 552 PDTTPAASDLPTEQPPSPQPGPPAASHTPEKQASSFDFNGPYLGPPHSRSLPDILGQPEP 611
Query: 62 EGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQP 121
EG + PPP E CL G + Q + A G EVE P P
Sbjct: 612 PQEGGSQKSPPP----GSLEYLCLPAGGQVQLVPLAQAMGP-GQAVEVERRPSQGAAGSP 666
Query: 122 CHDSEASKLGAPAAGGEEEWGQQQR 146
+S AP A G GQ Q+
Sbjct: 667 SLESGGGP--APPALGPRVGGQDQK 689
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 21/175 (12%)
Query: 115 AELLAQPCHDSEASKLG------APAAGGEEEWGQQQRQLGKKKH---RRRPSKKKRHWK 165
+E+ A P + + K+ P G +++ Q+ G+ H + R + W+
Sbjct: 509 SEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQ 568
Query: 166 PYYKLTWEEKKKFDEKQSLRASRIRAEMFAKG---QPVAPY-----NTTQFLMDDHDQEE 217
+ E KK E+Q + ++ +++ K Q A Y N + +
Sbjct: 569 RISQSQKEHYKKLAEEQQ-KQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNP 627
Query: 218 PDLKTGLYSKRAAAKSDDTSDDDFMEEGGEED---GGSDGMGGDGSEFLQRDFSE 269
+T L SK + + D+ +DD E+ EED G S GGD SE D SE
Sbjct: 628 KSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESE 682
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,788,532
Number of Sequences: 37866
Number of extensions: 1062092
Number of successful extensions: 7022
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 561
Number of HSP's that attempted gapping in prelim test: 5781
Number of HSP's gapped (non-prelim): 1707
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.