Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 53729334

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ...   375   e-104
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ...   269   8e-73
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ...   269   8e-73
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi...   162   1e-40
gi|50539414 cellular modulator of immune recognition isoform 7 [...    78   3e-15
gi|50539412 cellular modulator of immune recognition isoform 6 [...    78   3e-15
gi|50539410 cellular modulator of immune recognition isoform 8 [...    78   3e-15
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]        75   3e-14
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi...    60   1e-09
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]      58   4e-09
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi...    57   8e-09
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa...    55   4e-08
gi|154937342 ring finger protein 190 [Homo sapiens]                    54   5e-08
gi|154937340 ring finger protein 190 [Homo sapiens]                    54   5e-08
gi|12383066 axotrophin [Homo sapiens]                                  50   8e-07
gi|231573214 zinc finger protein 294 [Homo sapiens]                    36   0.015
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]    33   0.13 
gi|21389515 ring finger protein 145 [Homo sapiens]                     33   0.13 
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]                31   0.63 
gi|58331204 ring finger protein 150 [Homo sapiens]                     31   0.63 
gi|55770876 notch4 preproprotein [Homo sapiens]                        30   0.83 
gi|116235456 ring finger protein 214 [Homo sapiens]                    30   1.1  
gi|116235451 ring finger protein 214 [Homo sapiens]                    30   1.1  
gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo sa...    30   1.4  
gi|89363020 nuclear transcription factor, X-box binding-like 1 [...    29   1.8  
gi|63079718 three prime repair exonuclease 2 [Homo sapiens]            29   2.4  
gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]         29   2.4  
gi|5453976 protein kinase C, theta [Homo sapiens]                      29   2.4  
gi|186972143 tripeptidyl peptidase II [Homo sapiens]                   29   2.4  
gi|29788758 ring finger protein 130 [Homo sapiens]                     29   2.4  

>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
           [Homo sapiens]
          Length = 176

 Score =  375 bits (963), Expect = e-104
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
           MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60

Query: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
           GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120

Query: 121 PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
           PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 121 PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176


>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score =  269 bits (688), Expect = 8e-73
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
           MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60

Query: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
           GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120

Query: 121 PLTE 124
           PLTE
Sbjct: 121 PLTE 124



 Score =  111 bits (277), Expect = 4e-25
 Identities = 53/54 (98%), Positives = 53/54 (98%)

Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
           T VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 193 TLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 246


>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score =  269 bits (688), Expect = 8e-73
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
           MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1   MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60

Query: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
           GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61  GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120

Query: 121 PLTE 124
           PLTE
Sbjct: 121 PLTE 124



 Score =  111 bits (277), Expect = 4e-25
 Identities = 53/54 (98%), Positives = 53/54 (98%)

Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
           T VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 193 TLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 246


>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
           sapiens]
          Length = 253

 Score =  162 bits (411), Expect = 1e-40
 Identities = 83/131 (63%), Positives = 95/131 (72%), Gaps = 7/131 (5%)

Query: 1   MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD 56
           MTT  C HLP  L DC+ S A   K VE  G    G PQYV QV+++DG+LLSTV+R L 
Sbjct: 1   MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60

Query: 57  TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
           T S   D P CRICHEG++ E LLSPC CTGTLG +H+SCLE WLSSSNTSYCELCH  F
Sbjct: 61  TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120

Query: 114 AVEKRPRPLTE 124
           AVE++PRPL E
Sbjct: 121 AVERKPRPLVE 131



 Score = 51.2 bits (121), Expect = 5e-07
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
           T VSFRYHC+LY+EWR+TNQ+V L I ++ +    Q S L    +K+ ++ET V
Sbjct: 200 TLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV 253


>gi|50539414 cellular modulator of immune recognition isoform 7
           [Homo sapiens]
          Length = 291

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123

Query: 107 ELCHTEFAVEKRPRPL 122
           ELC  EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139


>gi|50539412 cellular modulator of immune recognition isoform 6
           [Homo sapiens]
          Length = 291

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123

Query: 107 ELCHTEFAVEKRPRPL 122
           ELC  EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139


>gi|50539410 cellular modulator of immune recognition isoform 8
           [Homo sapiens]
          Length = 291

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123

Query: 107 ELCHTEFAVEKRPRPL 122
           ELC  EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139


>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
          Length = 272

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 58  PSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVE 116
           PS    CRICH EG     L++PC CTGTL  VH+SCL +W+ SS+T  CELC  +F +E
Sbjct: 57  PSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIME 116

Query: 117 KRPRPL 122
            + +PL
Sbjct: 117 TKLKPL 122


>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
           sapiens]
          Length = 410

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 54  ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
           +LD+    P CRIC +G     LLSPC C G++   H+ CL KW+S      CELC+ ++
Sbjct: 153 SLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212

Query: 114 AV 115
            V
Sbjct: 213 HV 214


>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
          Length = 346

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 54  ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
           +LD+    P CRIC +G     LLSPC C G++   H+ CL +W+S   +  CELC+ ++
Sbjct: 100 SLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159

Query: 114 AV 115
            V
Sbjct: 160 QV 161


>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
           sapiens]
          Length = 910

 Score = 57.0 bits (136), Expect = 8e-09
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 55  LDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
           +DT  +   CR+C  EG   + L  PC CTG++  +H+ CL +WL  S   YCELC   F
Sbjct: 1   MDTAEED-ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59

Query: 114 A 114
           A
Sbjct: 60  A 60


>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
           sapiens]
          Length = 402

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 62  PFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
           P C+IC +GA    LL+PC C G++   H+ CL KW+S   +  CELC
Sbjct: 168 PICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215


>gi|154937342 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 56  DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
           D+  +G  CRIC    G+    LL PCGC G+L  VH+ CL+KWL    TS         
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710

Query: 106 CELCHTEFAVE 116
           CE+C     V+
Sbjct: 711 CEMCKQGLLVD 721


>gi|154937340 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 56  DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
           D+  +G  CRIC    G+    LL PCGC G+L  VH+ CL+KWL    TS         
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710

Query: 106 CELCHTEFAVE 116
           CE+C     V+
Sbjct: 711 CEMCKQGLLVD 721


>gi|12383066 axotrophin [Homo sapiens]
          Length = 704

 Score = 50.4 bits (119), Expect = 8e-07
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 42  SRDGRLLSTVIRAL----DTPSDGPFCRICHEGA--NGECLLSPCGCTGTLGAVHKSCLE 95
           SRD   L  +  +L        +G  CRIC   A  +   L+ PC CTG+L  VH+ C++
Sbjct: 526 SRDPERLQKIKESLLLEDSEEEEGDLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMK 585

Query: 96  KWLSSSNTS--------YCELC 109
           KWL +   S         CELC
Sbjct: 586 KWLQAKINSGSSLEAVTTCELC 607


>gi|231573214 zinc finger protein 294 [Homo sapiens]
          Length = 1812

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 64   CRICHEGANG-ECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
            C IC    +G    L    C       H +CL KW +SSN S C LC   F
Sbjct: 1761 CMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1811


>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
          Length = 278

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 79  PCGCTGTLGAVHKSCLEKWL------SSSNTSYCELCHTEFAV 115
           PC C G+   VH++CL++W+      +S+    C  C+ E+ +
Sbjct: 32  PCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74


>gi|21389515 ring finger protein 145 [Homo sapiens]
          Length = 691

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 64  CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKR-PRPL 122
           C IC++      +++PC         H  CL+KWL    T  C LCH       + P   
Sbjct: 565 CAICYQDMKS-AVITPCS-----HFFHAGCLKKWLYVQET--CPLCHCHLKNSSQLPGLG 616

Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSP 161
           TE   + H            +  +  +E   P G +H+P
Sbjct: 617 TEPVLQPH---------AGAEQNVMFQEGTEPPGQEHTP 646


>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
          Length = 3144

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 60  DGPFCRICHEGANG--------ECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
           DG  C +C+ G  G        +C+L+ C    T   +H S     LS    ++CE    
Sbjct: 715 DGFSC-LCNPGYVGIRCEQDIDDCILNACEHNSTCKDLHLSYQCVCLSDWEGNFCEQESN 773

Query: 112 EFAVE--KRPRPLTEVSFRYHCQLYSEWRKTNQKVRLKIREADS 153
           E  +   K     T++   Y C+  S W  T Q    +I E DS
Sbjct: 774 ECKMNPCKNNSTCTDLYKSYRCECTSGW--TGQNCSEEINECDS 815


>gi|58331204 ring finger protein 150 [Homo sapiens]
          Length = 438

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 56  DTPSDGPFCRICHEG--ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
           +T SD   C +C EG   N    + PC         HKSC++ WL    T  C +C
Sbjct: 270 ETESDFDNCAVCIEGYKPNDVVRILPCR-----HLFHKSCVDPWLLDHRT--CPMC 318


>gi|55770876 notch4 preproprotein [Homo sapiens]
          Length = 2003

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 35/127 (27%)

Query: 7    CHLP----GSLCDCSGSPAFSKVVE--ATGLGPPQ-YVAQVT-SRDGRLLSTVIRALD-- 56
            CH P    GSLC    +P  S+  +  AT +  P  Y+ Q     DG+  S  + A    
Sbjct: 916  CHCPPGFQGSLCQDHVNPCESRPCQNGATCMAQPSGYLCQCAPGYDGQNCSKELDACQSQ 975

Query: 57   --------TPSDGPFCRICHEGANG--------ECLLSPCGCTGTLGAVHKSCLEKWLSS 100
                    TP  G F   C  G  G        ECL  PC  TGT  A H        S 
Sbjct: 976  PCHNHGTCTPKPGGFHCACPPGFVGLRCEGDVDECLDQPCHPTGT-AACH--------SL 1026

Query: 101  SNTSYCE 107
            +N  YC+
Sbjct: 1027 ANAFYCQ 1033


>gi|116235456 ring finger protein 214 [Homo sapiens]
          Length = 703

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 53  RALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
           R+   P+    C +C +       L P  CT  L   HK C++ W  ++    C  C T
Sbjct: 647 RSSHAPATCKLCLMCQKLVQPS-ELHPMACTHVL---HKECIKFWAQTNTNDTCPFCPT 701


>gi|116235451 ring finger protein 214 [Homo sapiens]
          Length = 703

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 53  RALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
           R+   P+    C +C +       L P  CT  L   HK C++ W  ++    C  C T
Sbjct: 647 RSSHAPATCKLCLMCQKLVQPS-ELHPMACTHVL---HKECIKFWAQTNTNDTCPFCPT 701


>gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo
           sapiens]
          Length = 641

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 9/36 (25%)

Query: 97  WLSSSNTSYCELCHTEFAVEKRPRPLTEVSFRYHCQ 132
           WL     ++C+LC  EF++ KR         ++HC+
Sbjct: 572 WLKDKEATHCKLCEKEFSLSKR---------KHHCR 598


>gi|89363020 nuclear transcription factor, X-box binding-like 1
           [Homo sapiens]
          Length = 911

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 82  CTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEVSFRY 129
           C+G     H  C++KW   S      +   +F  +  P P  +  F Y
Sbjct: 176 CSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKKDCPWPCPKCRFEY 223


>gi|63079718 three prime repair exonuclease 2 [Homo sapiens]
          Length = 236

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 12  SLCDCSGSPAFSKVVEATGLGPPQYV-AQVTSRDGRLLSTVIRALDTPSDGPFCRICHEG 70
           +LC C   P  +K  E TGL        +    DG ++ T ++A  +   GP C + H G
Sbjct: 61  TLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRT-LQAFLSRQAGPICLVAHNG 119


>gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]
          Length = 280

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 5   DCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFC 64
           D CH+   + DC   P   K  ++      +   +  ++  R  S V  A+D P++  +C
Sbjct: 162 DLCHMANGIEDCDDQPPKEKKSKSA-----KKKKRSKAKQEREASPVEFAID-PNEPTYC 215

Query: 65  RICHEGANGECLLSPCGCTGTLGAV---HKSCLEKWLSSSNTSYCELC 109
            +C++ + GE +    GC      +   H SC+          YC  C
Sbjct: 216 -LCNQVSYGEMI----GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 258


>gi|5453976 protein kinase C, theta [Homo sapiens]
          Length = 706

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 63  FCRICHEGANGECLLSPCG--CTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEK 117
           FC +CHE   G   L+  G  C     A+HK C++K ++    S      T F  E+
Sbjct: 172 FCSVCHEFVWG---LNKQGYQCRQCNAAIHKKCIDKVIAKCTGSAINSRETMFHKER 225


>gi|186972143 tripeptidyl peptidase II [Homo sapiens]
          Length = 1249

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 10  PGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPS 59
           PG      G P    +++ TG G      +V  +DG ++    R L  P+
Sbjct: 52  PGMQVTTDGKPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPA 101


>gi|29788758 ring finger protein 130 [Homo sapiens]
          Length = 419

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 56  DTPSDGPFCRICHEG--ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
           +T  D   C +C E    N    + PC         HKSC++ WLS   T  C +C
Sbjct: 256 ETDPDFDHCAVCIESYKQNDVVRILPCK-----HVFHKSCVDPWLSEHCT--CPMC 304


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,382,981
Number of Sequences: 37866
Number of extensions: 394424
Number of successful extensions: 1066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 70
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press