Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 53729334
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 375 e-104
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 269 8e-73
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 269 8e-73
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 162 1e-40
gi|50539414 cellular modulator of immune recognition isoform 7 [... 78 3e-15
gi|50539412 cellular modulator of immune recognition isoform 6 [... 78 3e-15
gi|50539410 cellular modulator of immune recognition isoform 8 [... 78 3e-15
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 75 3e-14
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 60 1e-09
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 58 4e-09
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 57 8e-09
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 55 4e-08
gi|154937342 ring finger protein 190 [Homo sapiens] 54 5e-08
gi|154937340 ring finger protein 190 [Homo sapiens] 54 5e-08
gi|12383066 axotrophin [Homo sapiens] 50 8e-07
gi|231573214 zinc finger protein 294 [Homo sapiens] 36 0.015
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 33 0.13
gi|21389515 ring finger protein 145 [Homo sapiens] 33 0.13
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens] 31 0.63
gi|58331204 ring finger protein 150 [Homo sapiens] 31 0.63
gi|55770876 notch4 preproprotein [Homo sapiens] 30 0.83
gi|116235456 ring finger protein 214 [Homo sapiens] 30 1.1
gi|116235451 ring finger protein 214 [Homo sapiens] 30 1.1
gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo sa... 30 1.4
gi|89363020 nuclear transcription factor, X-box binding-like 1 [... 29 1.8
gi|63079718 three prime repair exonuclease 2 [Homo sapiens] 29 2.4
gi|4504695 inhibitor of growth family, member 2 [Homo sapiens] 29 2.4
gi|5453976 protein kinase C, theta [Homo sapiens] 29 2.4
gi|186972143 tripeptidyl peptidase II [Homo sapiens] 29 2.4
gi|29788758 ring finger protein 130 [Homo sapiens] 29 2.4
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 375 bits (963), Expect = e-104
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
Query: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
Query: 121 PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 121 PLTEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 269 bits (688), Expect = 8e-73
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
Query: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
Query: 121 PLTE 124
PLTE
Sbjct: 121 PLTE 124
Score = 111 bits (277), Expect = 4e-25
Identities = 53/54 (98%), Positives = 53/54 (98%)
Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
T VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 193 TLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 246
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 269 bits (688), Expect = 8e-73
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 60
Query: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
Sbjct: 61 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 120
Query: 121 PLTE 124
PLTE
Sbjct: 121 PLTE 124
Score = 111 bits (277), Expect = 4e-25
Identities = 53/54 (98%), Positives = 53/54 (98%)
Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
T VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
Sbjct: 193 TLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 246
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 162 bits (411), Expect = 1e-40
Identities = 83/131 (63%), Positives = 95/131 (72%), Gaps = 7/131 (5%)
Query: 1 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD 56
MTT C HLP L DC+ S A K VE G G PQYV QV+++DG+LLSTV+R L
Sbjct: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
Query: 57 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
T S D P CRICHEG++ E LLSPC CTGTLG +H+SCLE WLSSSNTSYCELCH F
Sbjct: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
Query: 114 AVEKRPRPLTE 124
AVE++PRPL E
Sbjct: 121 AVERKPRPLVE 131
Score = 51.2 bits (121), Expect = 5e-07
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
T VSFRYHC+LY+EWR+TNQ+V L I ++ + Q S L +K+ ++ET V
Sbjct: 200 TLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV 253
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-15
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 48 LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
+S+ R TPS CRICH EG + L++PC CTG+L VH++CL++W+ SS+T C
Sbjct: 64 VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
Query: 107 ELCHTEFAVEKRPRPL 122
ELC EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-15
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 48 LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
+S+ R TPS CRICH EG + L++PC CTG+L VH++CL++W+ SS+T C
Sbjct: 64 VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
Query: 107 ELCHTEFAVEKRPRPL 122
ELC EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-15
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 48 LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106
+S+ R TPS CRICH EG + L++PC CTG+L VH++CL++W+ SS+T C
Sbjct: 64 VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
Query: 107 ELCHTEFAVEKRPRPL 122
ELC EF +E + +PL
Sbjct: 124 ELCKYEFIMETKLKPL 139
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 75.1 bits (183), Expect = 3e-14
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 58 PSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVE 116
PS CRICH EG L++PC CTGTL VH+SCL +W+ SS+T CELC +F +E
Sbjct: 57 PSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIME 116
Query: 117 KRPRPL 122
+ +PL
Sbjct: 117 TKLKPL 122
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 59.7 bits (143), Expect = 1e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
+LD+ P CRIC +G LLSPC C G++ H+ CL KW+S CELC+ ++
Sbjct: 153 SLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
Query: 114 AV 115
V
Sbjct: 213 HV 214
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 58.2 bits (139), Expect = 4e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
+LD+ P CRIC +G LLSPC C G++ H+ CL +W+S + CELC+ ++
Sbjct: 100 SLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
Query: 114 AV 115
V
Sbjct: 160 QV 161
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 57.0 bits (136), Expect = 8e-09
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 55 LDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
+DT + CR+C EG + L PC CTG++ +H+ CL +WL S YCELC F
Sbjct: 1 MDTAEED-ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
Query: 114 A 114
A
Sbjct: 60 A 60
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 54.7 bits (130), Expect = 4e-08
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 62 PFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
P C+IC +GA LL+PC C G++ H+ CL KW+S + CELC
Sbjct: 168 PICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 54.3 bits (129), Expect = 5e-08
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 56 DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
D+ +G CRIC G+ LL PCGC G+L VH+ CL+KWL TS
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 106 CELCHTEFAVE 116
CE+C V+
Sbjct: 711 CEMCKQGLLVD 721
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 54.3 bits (129), Expect = 5e-08
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 56 DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
D+ +G CRIC G+ LL PCGC G+L VH+ CL+KWL TS
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 106 CELCHTEFAVE 116
CE+C V+
Sbjct: 711 CEMCKQGLLVD 721
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 50.4 bits (119), Expect = 8e-07
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 42 SRDGRLLSTVIRAL----DTPSDGPFCRICHEGA--NGECLLSPCGCTGTLGAVHKSCLE 95
SRD L + +L +G CRIC A + L+ PC CTG+L VH+ C++
Sbjct: 526 SRDPERLQKIKESLLLEDSEEEEGDLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMK 585
Query: 96 KWLSSSNTS--------YCELC 109
KWL + S CELC
Sbjct: 586 KWLQAKINSGSSLEAVTTCELC 607
>gi|231573214 zinc finger protein 294 [Homo sapiens]
Length = 1812
Score = 36.2 bits (82), Expect = 0.015
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 64 CRICHEGANG-ECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
C IC +G L C H +CL KW +SSN S C LC F
Sbjct: 1761 CMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1811
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 79 PCGCTGTLGAVHKSCLEKWL------SSSNTSYCELCHTEFAV 115
PC C G+ VH++CL++W+ +S+ C C+ E+ +
Sbjct: 32 PCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKR-PRPL 122
C IC++ +++PC H CL+KWL T C LCH + P
Sbjct: 565 CAICYQDMKS-AVITPCS-----HFFHAGCLKKWLYVQET--CPLCHCHLKNSSQLPGLG 616
Query: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSP 161
TE + H + + +E P G +H+P
Sbjct: 617 TEPVLQPH---------AGAEQNVMFQEGTEPPGQEHTP 646
>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
Length = 3144
Score = 30.8 bits (68), Expect = 0.63
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 60 DGPFCRICHEGANG--------ECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
DG C +C+ G G +C+L+ C T +H S LS ++CE
Sbjct: 715 DGFSC-LCNPGYVGIRCEQDIDDCILNACEHNSTCKDLHLSYQCVCLSDWEGNFCEQESN 773
Query: 112 EFAVE--KRPRPLTEVSFRYHCQLYSEWRKTNQKVRLKIREADS 153
E + K T++ Y C+ S W T Q +I E DS
Sbjct: 774 ECKMNPCKNNSTCTDLYKSYRCECTSGW--TGQNCSEEINECDS 815
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 56 DTPSDGPFCRICHEG--ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
+T SD C +C EG N + PC HKSC++ WL T C +C
Sbjct: 270 ETESDFDNCAVCIEGYKPNDVVRILPCR-----HLFHKSCVDPWLLDHRT--CPMC 318
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 30.4 bits (67), Expect = 0.83
Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 35/127 (27%)
Query: 7 CHLP----GSLCDCSGSPAFSKVVE--ATGLGPPQ-YVAQVT-SRDGRLLSTVIRALD-- 56
CH P GSLC +P S+ + AT + P Y+ Q DG+ S + A
Sbjct: 916 CHCPPGFQGSLCQDHVNPCESRPCQNGATCMAQPSGYLCQCAPGYDGQNCSKELDACQSQ 975
Query: 57 --------TPSDGPFCRICHEGANG--------ECLLSPCGCTGTLGAVHKSCLEKWLSS 100
TP G F C G G ECL PC TGT A H S
Sbjct: 976 PCHNHGTCTPKPGGFHCACPPGFVGLRCEGDVDECLDQPCHPTGT-AACH--------SL 1026
Query: 101 SNTSYCE 107
+N YC+
Sbjct: 1027 ANAFYCQ 1033
>gi|116235456 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 53 RALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
R+ P+ C +C + L P CT L HK C++ W ++ C C T
Sbjct: 647 RSSHAPATCKLCLMCQKLVQPS-ELHPMACTHVL---HKECIKFWAQTNTNDTCPFCPT 701
>gi|116235451 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 53 RALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
R+ P+ C +C + L P CT L HK C++ W ++ C C T
Sbjct: 647 RSSHAPATCKLCLMCQKLVQPS-ELHPMACTHVL---HKECIKFWAQTNTNDTCPFCPT 701
>gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo
sapiens]
Length = 641
Score = 29.6 bits (65), Expect = 1.4
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 97 WLSSSNTSYCELCHTEFAVEKRPRPLTEVSFRYHCQ 132
WL ++C+LC EF++ KR ++HC+
Sbjct: 572 WLKDKEATHCKLCEKEFSLSKR---------KHHCR 598
>gi|89363020 nuclear transcription factor, X-box binding-like 1
[Homo sapiens]
Length = 911
Score = 29.3 bits (64), Expect = 1.8
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 82 CTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEVSFRY 129
C+G H C++KW S + +F + P P + F Y
Sbjct: 176 CSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKKDCPWPCPKCRFEY 223
>gi|63079718 three prime repair exonuclease 2 [Homo sapiens]
Length = 236
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 12 SLCDCSGSPAFSKVVEATGLGPPQYV-AQVTSRDGRLLSTVIRALDTPSDGPFCRICHEG 70
+LC C P +K E TGL + DG ++ T ++A + GP C + H G
Sbjct: 61 TLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRT-LQAFLSRQAGPICLVAHNG 119
>gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]
Length = 280
Score = 28.9 bits (63), Expect = 2.4
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 5 DCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFC 64
D CH+ + DC P K ++ + + ++ R S V A+D P++ +C
Sbjct: 162 DLCHMANGIEDCDDQPPKEKKSKSA-----KKKKRSKAKQEREASPVEFAID-PNEPTYC 215
Query: 65 RICHEGANGECLLSPCGCTGTLGAV---HKSCLEKWLSSSNTSYCELC 109
+C++ + GE + GC + H SC+ YC C
Sbjct: 216 -LCNQVSYGEMI----GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 258
>gi|5453976 protein kinase C, theta [Homo sapiens]
Length = 706
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 63 FCRICHEGANGECLLSPCG--CTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEK 117
FC +CHE G L+ G C A+HK C++K ++ S T F E+
Sbjct: 172 FCSVCHEFVWG---LNKQGYQCRQCNAAIHKKCIDKVIAKCTGSAINSRETMFHKER 225
>gi|186972143 tripeptidyl peptidase II [Homo sapiens]
Length = 1249
Score = 28.9 bits (63), Expect = 2.4
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 10 PGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPS 59
PG G P +++ TG G +V +DG ++ R L P+
Sbjct: 52 PGMQVTTDGKPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPA 101
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 56 DTPSDGPFCRICHEG--ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
+T D C +C E N + PC HKSC++ WLS T C +C
Sbjct: 256 ETDPDFDHCAVCIESYKQNDVVRILPCK-----HVFHKSCVDPWLSEHCT--CPMC 304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,382,981
Number of Sequences: 37866
Number of extensions: 394424
Number of successful extensions: 1066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 70
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.