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Search of human proteins with 52851437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52851437 transmembrane protein 62 [Homo sapiens]
(643 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52851437 transmembrane protein 62 [Homo sapiens] 1316 0.0
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 36 0.096
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 33 0.62
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 33 0.62
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 33 0.62
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 33 0.62
gi|53793663 olfactory receptor, family 10, subfamily G, member 2... 33 0.81
gi|194097341 period 1 [Homo sapiens] 33 1.1
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 33 1.1
gi|161377455 acid phosphatase 5, tartrate resistant precursor [H... 33 1.1
gi|161377453 acid phosphatase 5, tartrate resistant precursor [H... 33 1.1
gi|161377451 acid phosphatase 5, tartrate resistant precursor [H... 33 1.1
gi|4501873 acid phosphatase 5, tartrate resistant precursor [Hom... 33 1.1
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 33 1.1
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 33 1.1
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 33 1.1
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 33 1.1
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 33 1.1
gi|150170694 hypothetical protein LOC400451 [Homo sapiens] 32 1.4
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 32 1.4
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 1.8
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 32 1.8
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 32 1.8
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 32 1.8
gi|45238858 WD repeat domain 44 protein [Homo sapiens] 32 1.8
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 32 1.8
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 32 2.4
gi|74271816 radical fringe [Homo sapiens] 32 2.4
gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens] 32 2.4
gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens] 32 2.4
>gi|52851437 transmembrane protein 62 [Homo sapiens]
Length = 643
Score = 1316 bits (3406), Expect = 0.0
Identities = 643/643 (100%), Positives = 643/643 (100%)
Query: 1 MAAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGPGDSNIFWGLQ 60
MAAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGPGDSNIFWGLQ
Sbjct: 1 MAAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGPGDSNIFWGLQ 60
Query: 61 ISDIHLSRFRDPGRAVDLEKFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQT 120
ISDIHLSRFRDPGRAVDLEKFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQT
Sbjct: 61 ISDIHLSRFRDPGRAVDLEKFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQT 120
Query: 121 YQGILKKTRVMEKTKWLDIKGNHDAFNIPSLDSIKNYYRKYSAVRRDGSFHYVHSTPFGN 180
YQGILKKTRVMEKTKWLDIKGNHDAFNIPSLDSIKNYYRKYSAVRRDGSFHYVHSTPFGN
Sbjct: 121 YQGILKKTRVMEKTKWLDIKGNHDAFNIPSLDSIKNYYRKYSAVRRDGSFHYVHSTPFGN 180
Query: 181 YSFICVDATVNPGPKRPYNFFGILDKKKMEELLLLAKESSRSNHTIWFGHFTTSTILSPS 240
YSFICVDATVNPGPKRPYNFFGILDKKKMEELLLLAKESSRSNHTIWFGHFTTSTILSPS
Sbjct: 181 YSFICVDATVNPGPKRPYNFFGILDKKKMEELLLLAKESSRSNHTIWFGHFTTSTILSPS 240
Query: 241 PGIRSIMSSAIAYLCGHLHTLGGLMPVLHTRHFQGTLELEVGDWKDNRRYRIFAFDHDLF 300
PGIRSIMSSAIAYLCGHLHTLGGLMPVLHTRHFQGTLELEVGDWKDNRRYRIFAFDHDLF
Sbjct: 241 PGIRSIMSSAIAYLCGHLHTLGGLMPVLHTRHFQGTLELEVGDWKDNRRYRIFAFDHDLF 300
Query: 301 SFADLIFGKWPVVLITNPKSLLYSCGEHEPLERLLHSTHIRVLAFSLSSITSVTVKIDGV 360
SFADLIFGKWPVVLITNPKSLLYSCGEHEPLERLLHSTHIRVLAFSLSSITSVTVKIDGV
Sbjct: 301 SFADLIFGKWPVVLITNPKSLLYSCGEHEPLERLLHSTHIRVLAFSLSSITSVTVKIDGV 360
Query: 361 HLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQENNHLSFDPL 420
HLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQENNHLSFDPL
Sbjct: 361 HLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQENNHLSFDPL 420
Query: 421 ASFILRTDHYIMARVLFVLIVLSQLTILIIFRYRGYPELKEPSGFINLTSFSLHVLSKIN 480
ASFILRTDHYIMARVLFVLIVLSQLTILIIFRYRGYPELKEPSGFINLTSFSLHVLSKIN
Sbjct: 421 ASFILRTDHYIMARVLFVLIVLSQLTILIIFRYRGYPELKEPSGFINLTSFSLHVLSKIN 480
Query: 481 IFYYSVLLLTLYTVLGPWFFGEIIDGKFGCCFSFGIFVNGHFLQGSITFIIGILQLAFFN 540
IFYYSVLLLTLYTVLGPWFFGEIIDGKFGCCFSFGIFVNGHFLQGSITFIIGILQLAFFN
Sbjct: 481 IFYYSVLLLTLYTVLGPWFFGEIIDGKFGCCFSFGIFVNGHFLQGSITFIIGILQLAFFN 540
Query: 541 IPLMAYMCWSLLQRCFGHNFRSHLHQRKYLKIMPVHLLMLLLYIWQVYSCYFLYATYGTL 600
IPLMAYMCWSLLQRCFGHNFRSHLHQRKYLKIMPVHLLMLLLYIWQVYSCYFLYATYGTL
Sbjct: 541 IPLMAYMCWSLLQRCFGHNFRSHLHQRKYLKIMPVHLLMLLLYIWQVYSCYFLYATYGTL 600
Query: 601 AFLFSPLRTWLTLLTPVLIRYVWTLNSTKFGIFMVQLKSHLSS 643
AFLFSPLRTWLTLLTPVLIRYVWTLNSTKFGIFMVQLKSHLSS
Sbjct: 601 AFLFSPLRTWLTLLTPVLIRYVWTLNSTKFGIFMVQLKSHLSS 643
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 36.2 bits (82), Expect = 0.096
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 18 LVAMLLEHYGLAGQP----SPLPRPAPPRRPHPAPGPG 51
L A LLEH GL P P P P+P R P P+PGPG
Sbjct: 119 LDAFLLEH-GLPPSPPPPGGPSPEPSPARTPAPSPGPG 155
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 33.5 bits (75), Expect = 0.62
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 23 LEHYGLAG-------QPSPLPRPAPPRRPHPAPGPGDSNIF 56
+E G AG +P P P PAP P P PG G S F
Sbjct: 1 MEDAGAAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAF 41
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo
sapiens]
Length = 170
Score = 33.5 bits (75), Expect = 0.62
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 2 AAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPL---PRPAPPRRPHPAPGP 50
A +LA A A L+A LL G A P P P PAPP AP P
Sbjct: 5 AELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAP 56
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo
sapiens]
Length = 177
Score = 33.5 bits (75), Expect = 0.62
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 2 AAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPL---PRPAPPRRPHPAPGP 50
A +LA A A L+A LL G A P P P PAPP AP P
Sbjct: 5 AELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAP 56
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo
sapiens]
Length = 204
Score = 33.5 bits (75), Expect = 0.62
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 2 AAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPL---PRPAPPRRPHPAPGP 50
A +LA A A L+A LL G A P P P PAPP AP P
Sbjct: 5 AELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAP 56
>gi|53793663 olfactory receptor, family 10, subfamily G, member 2
[Homo sapiens]
Length = 310
Score = 33.1 bits (74), Expect = 0.81
Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 45/238 (18%)
Query: 430 YIMARVL-FVLIVLSQLTI-LIIFRYRGYPELKE-PSGFINLTSFSLHVLSKINIFYYSV 486
YI+ VL F+ + LS +T+ +I + P +K P G + H L F Y++
Sbjct: 65 YILLGVLSFLDMWLSSVTVPRLILDFT--PSIKAIPFGGCVAQLYFFHFLGSTQCFLYTL 122
Query: 487 LLLTLY-TVLGPWFFGEIIDGKFGCCFSFGIFVNGHF---LQGSITF------------- 529
+ Y + P + +++G+ G +V G +Q ++TF
Sbjct: 123 MAYDRYLAICQPLHYPVLMNGRLCTVLVAGAWVAGSMHGSIQATLTFRLPYCGPNQVDYF 182
Query: 530 ---IIGILQLA-----------FFNIPLMAYMCWSLLQRCFGH------NFRSHLHQRKY 569
I +L+LA F ++ ++A C+ L+ + + R+ +R+
Sbjct: 183 ICDIRAVLRLACADTTVNELVTFVDVRVVAASCFMLILLSYANIVHAILKIRTADGRRRA 242
Query: 570 LKIMPVHLLMLLLYIWQVYSCYFLYATYGTLAFLFSPLRTWLTLLTPVLIRYVWTLNS 627
HL+++ +Y C F+Y G+ L + T++TP+L ++TL +
Sbjct: 243 FSTCGSHLIVVTVYY---VPCIFIYLRAGSKDPLDGAAAVFYTVVTPLLNPLIYTLRN 297
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 32.7 bits (73), Expect = 1.1
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 19 VAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGP----GDSNIFWGLQI---SDIHLSRFRD 71
+ M+ + GLA P+P P P+P P PAP G + L LSRFRD
Sbjct: 741 IIMMEDLPGLAPGPAPSPAPSPTVAPDPAPDAYRPVGLTKAVLSLHTQKEEQAFLSRFRD 800
Query: 72 PGRAVDLE 79
GR L+
Sbjct: 801 LGRLRGLD 808
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.7 bits (73), Expect = 1.1
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 40 PPRRPHPAPGPGDSNIFWGLQISDIHLSRFRDPGRAVDLEKFCSETIDIIQPA-LVLATG 98
P R +PAPGP + Q+ DI S G+ +D + ++T II A + +A G
Sbjct: 794 PTRSFYPAPGPWPKSFSDRQQMKDIR-SEAERLGKTID--RLIADTSTIITEARIYVANG 850
Query: 99 DLTDAKTKEQLGSRQHEVE 117
DL +E GSR E E
Sbjct: 851 DLFGLMDEEDDGSRIREHE 869
>gi|161377455 acid phosphatase 5, tartrate resistant precursor [Homo
sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 80 KFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKKTRVMEKTKWLDI 139
K + T+ I+ +L+ GD + + ++ + +T++ + R + K W +
Sbjct: 52 KEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQ---ETFEDVFSD-RSLRKVPWYVL 107
Query: 140 KGNHDAF-NIPSLDSIKNYYRKYSAVRRDGSFHYVH-STPFGNYSF---------IC--V 186
GNHD N+ + + ++++ F+ +H P N S +C
Sbjct: 108 AGNHDHLGNVSAQIAYSKISKRWNF---PSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNS 164
Query: 187 DATVNPGPKRPYNFFGILDKKKMEELLLLAKE--SSRSNHTIWFGHFTTSTILSPSPG-- 242
D ++ P+RP + K +L L K+ ++R ++ + GH+ +I P
Sbjct: 165 DDFLSQQPERPRDV-----KLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHC 219
Query: 243 ----IRSIMSS--AIAYLCGHLHTL 261
+R ++++ AYLCGH H L
Sbjct: 220 LVKQLRPLLATYGVTAYLCGHDHNL 244
>gi|161377453 acid phosphatase 5, tartrate resistant precursor [Homo
sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 80 KFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKKTRVMEKTKWLDI 139
K + T+ I+ +L+ GD + + ++ + +T++ + R + K W +
Sbjct: 52 KEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQ---ETFEDVFSD-RSLRKVPWYVL 107
Query: 140 KGNHDAF-NIPSLDSIKNYYRKYSAVRRDGSFHYVH-STPFGNYSF---------IC--V 186
GNHD N+ + + ++++ F+ +H P N S +C
Sbjct: 108 AGNHDHLGNVSAQIAYSKISKRWNF---PSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNS 164
Query: 187 DATVNPGPKRPYNFFGILDKKKMEELLLLAKE--SSRSNHTIWFGHFTTSTILSPSPG-- 242
D ++ P+RP + K +L L K+ ++R ++ + GH+ +I P
Sbjct: 165 DDFLSQQPERPRDV-----KLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHC 219
Query: 243 ----IRSIMSS--AIAYLCGHLHTL 261
+R ++++ AYLCGH H L
Sbjct: 220 LVKQLRPLLATYGVTAYLCGHDHNL 244
>gi|161377451 acid phosphatase 5, tartrate resistant precursor [Homo
sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 80 KFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKKTRVMEKTKWLDI 139
K + T+ I+ +L+ GD + + ++ + +T++ + R + K W +
Sbjct: 52 KEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQ---ETFEDVFSD-RSLRKVPWYVL 107
Query: 140 KGNHDAF-NIPSLDSIKNYYRKYSAVRRDGSFHYVH-STPFGNYSF---------IC--V 186
GNHD N+ + + ++++ F+ +H P N S +C
Sbjct: 108 AGNHDHLGNVSAQIAYSKISKRWNF---PSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNS 164
Query: 187 DATVNPGPKRPYNFFGILDKKKMEELLLLAKE--SSRSNHTIWFGHFTTSTILSPSPG-- 242
D ++ P+RP + K +L L K+ ++R ++ + GH+ +I P
Sbjct: 165 DDFLSQQPERPRDV-----KLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHC 219
Query: 243 ----IRSIMSS--AIAYLCGHLHTL 261
+R ++++ AYLCGH H L
Sbjct: 220 LVKQLRPLLATYGVTAYLCGHDHNL 244
>gi|4501873 acid phosphatase 5, tartrate resistant precursor [Homo
sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 80 KFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKKTRVMEKTKWLDI 139
K + T+ I+ +L+ GD + + ++ + +T++ + R + K W +
Sbjct: 52 KEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQ---ETFEDVFSD-RSLRKVPWYVL 107
Query: 140 KGNHDAF-NIPSLDSIKNYYRKYSAVRRDGSFHYVH-STPFGNYSF---------IC--V 186
GNHD N+ + + ++++ F+ +H P N S +C
Sbjct: 108 AGNHDHLGNVSAQIAYSKISKRWNF---PSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNS 164
Query: 187 DATVNPGPKRPYNFFGILDKKKMEELLLLAKE--SSRSNHTIWFGHFTTSTILSPSPG-- 242
D ++ P+RP + K +L L K+ ++R ++ + GH+ +I P
Sbjct: 165 DDFLSQQPERPRDV-----KLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHC 219
Query: 243 ----IRSIMSS--AIAYLCGHLHTL 261
+R ++++ AYLCGH H L
Sbjct: 220 LVKQLRPLLATYGVTAYLCGHDHNL 244
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 32.7 bits (73), Expect = 1.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 29 AGQPSPLPRPAPPRRPHPAPGPG 51
A PSP+P PAP P P P PG
Sbjct: 280 ARAPSPVPAPAPEPEPAPTPAPG 302
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 32.7 bits (73), Expect = 1.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 29 AGQPSPLPRPAPPRRPHPAPGPG 51
A PSP+P PAP P P P PG
Sbjct: 225 ARAPSPVPAPAPEPEPAPTPAPG 247
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1 MAAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAP--PRRPHPAPGPGD 52
+A V R A L + L GL PSP PRP P P R PA G G+
Sbjct: 1419 LARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPRPVPGSPARDAPAEGSGE 1472
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 14 AAAALVAMLLEHYGLAGQPSPLPRPAPPR---RPHPAPGP 50
A A A + AGQP+P P PPR R PAPGP
Sbjct: 137 AQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGP 176
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 14 AAAALVAMLLEHYGLAG----------QPSPLPRPAPPRRPHPAPGP 50
AAAA A L+ H G QPS P PAPP P P+P P
Sbjct: 119 AAAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPP 165
Score = 29.6 bits (65), Expect = 9.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 2 AAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPG 49
AA LR + L+ ++ LAG P P P P PP P PA G
Sbjct: 380 AAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAGG 427
>gi|150170694 hypothetical protein LOC400451 [Homo sapiens]
Length = 159
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 2 AAVLALRVVAGLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGPGDSNIF 56
A +L L ++A LAA A A E +P P P RP P PGPG++ F
Sbjct: 8 APLLPLLLLALLAAPAARASRAESVS-----APWPEPERESRPPPGPGPGNTTRF 57
>gi|148229134 ring finger and KH domain containing 2 [Homo
sapiens]
Length = 659
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 28 LAGQPSPLPRPAPPRRPHPAPGPGDS 53
LA P+PLP+P PP P P P P S
Sbjct: 11 LAAAPAPLPQPPPPPPPPPPPLPPPS 36
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 27 GLAGQPSPLPRPAPPRRPHPAPGPG 51
GLAG P P P PP P P PGPG
Sbjct: 998 GLAGAPGPAGPPGPPGPPGP-PGPG 1021
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 27 GLAGQPSPLPRPAPPRRPHPAPGPG 51
GLAG P P P PP P P PGPG
Sbjct: 583 GLAGAPGPAGPPGPPGPPGP-PGPG 606
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 27 GLAGQPSPLPRPAPPRRPHPAPGPG 51
GLAG P P P PP P P PGPG
Sbjct: 763 GLAGAPGPAGPPGPPGPPGP-PGPG 786
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 32.0 bits (71), Expect = 1.8
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 29 AGQPSPLPRPAPPRRPHPAPGPGDSNI 55
A QP PL PAP P PAP P + I
Sbjct: 13 AAQPRPLQSPAPAPTPTPAPSPASAPI 39
>gi|45238858 WD repeat domain 44 protein [Homo sapiens]
Length = 913
Score = 32.0 bits (71), Expect = 1.8
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 34 PLPRPAPPRRPHPAPGPGDSNI-FWGLQISDIHLSRFRDPGRAVDLEKFCSE-TIDIIQP 91
P PRP PP RP P P S + F L+ DI + + ++ SE T+ QP
Sbjct: 243 PPPRPPPPSRPAPPPRKRKSELEFETLKTPDIDVPKENITSDSLLTASMASESTVKDSQP 302
Query: 92 ALVLATGDLTD 102
+L LA+ D
Sbjct: 303 SLDLASATSGD 313
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/39 (46%), Positives = 18/39 (46%)
Query: 12 GLAAAALVAMLLEHYGLAGQPSPLPRPAPPRRPHPAPGP 50
GLA AA L E G P P PRP PR P P P
Sbjct: 1354 GLALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTP 1392
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 29 AGQPSPLPRPAPPRRPH---PAPGPGDSNIFWGLQISDIHLSRFRDPGRAVDLEKFCSET 85
A P P P P PP RP P+ GP N + LSR D ++ T
Sbjct: 317 AAAPGPCPPPPPPPRPSKPTPSLGPAGDN--------PLELSRIPDENCQINRYGHFQAT 368
Query: 86 IDIIQPALVLATGDLTD 102
I I++ L + +TD
Sbjct: 369 ITIVEGILEVNIIQMTD 385
>gi|74271816 radical fringe [Homo sapiens]
Length = 331
Score = 31.6 bits (70), Expect = 2.4
Identities = 20/35 (57%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 15 AAALVAMLLEHYGLAGQPSPLPR-PAPPRRPHPAP 48
AAAL A+LL P PLPR PAP R P PAP
Sbjct: 16 AAALAALLL-------LPLPLPRAPAPARTPAPAP 43
>gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens]
Length = 972
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 19 VAMLLEHYGLAGQPSPLPRPAPP-----------RRPHPAPGPGDSNIFWGLQISDIHLS 67
+A+ L L G SP P P P RRP PA PG ++ D +L
Sbjct: 502 LALFLRQQSLGGSESPGPAPCSPGLSASPASSPGRRPTPAEEPG--------ELEDNYLE 553
Query: 68 RFRDPGRAVD 77
R+ R VD
Sbjct: 554 YLREARRGVD 563
>gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens]
Length = 986
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 19 VAMLLEHYGLAGQPSPLPRPAPP-----------RRPHPAPGPGDSNIFWGLQISDIHLS 67
+A+ L L G SP P P P RRP PA PG ++ D +L
Sbjct: 516 LALFLRQQSLGGSESPGPAPCSPGLSASPASSPGRRPTPAEEPG--------ELEDNYLE 567
Query: 68 RFRDPGRAVD 77
R+ R VD
Sbjct: 568 YLREARRGVD 577
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,406,271
Number of Sequences: 37866
Number of extensions: 1233681
Number of successful extensions: 10196
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 9821
Number of HSP's gapped (non-prelim): 325
length of query: 643
length of database: 18,247,518
effective HSP length: 109
effective length of query: 534
effective length of database: 14,120,124
effective search space: 7540146216
effective search space used: 7540146216
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.