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Search of human proteins with 52632385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 962 0.0
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 962 0.0
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 492 e-139
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 492 e-139
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 145 1e-34
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 142 6e-34
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 139 7e-33
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 135 6e-32
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 89 1e-17
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 70 5e-12
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 50 6e-06
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 50 6e-06
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 50 6e-06
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 48 2e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 47 3e-05
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 46 6e-05
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 45 1e-04
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 45 1e-04
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 45 1e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 45 1e-04
gi|150417989 cyclin K isoform 1 [Homo sapiens] 45 1e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 45 1e-04
gi|224548950 hypothetical protein LOC644844 [Homo sapiens] 45 1e-04
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 45 2e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 44 2e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 44 3e-04
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 43 5e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 43 5e-04
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 43 5e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 43 7e-04
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 962 bits (2488), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
Query: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG
Sbjct: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
Query: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH
Sbjct: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
Query: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP
Sbjct: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
Query: 241 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 300
EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD
Sbjct: 241 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 300
Query: 301 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 360
RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK
Sbjct: 301 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 360
Query: 361 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 420
NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS
Sbjct: 361 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 420
Query: 421 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 456
DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
Sbjct: 421 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 456
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 962 bits (2488), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS
Sbjct: 134 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 193
Query: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG
Sbjct: 194 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 253
Query: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH
Sbjct: 254 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 313
Query: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP
Sbjct: 314 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 373
Query: 241 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 300
EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD
Sbjct: 374 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 433
Query: 301 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 360
RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK
Sbjct: 434 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 493
Query: 361 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 420
NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS
Sbjct: 494 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 553
Query: 421 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 456
DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
Sbjct: 554 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 589
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 492 bits (1266), Expect = e-139
Identities = 262/457 (57%), Positives = 324/457 (70%), Gaps = 26/457 (5%)
Query: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD N
Sbjct: 103 MPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNK 162
Query: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+LNG
Sbjct: 163 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 222
Query: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
ADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +LG+H
Sbjct: 223 ADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AILGEH 277
Query: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
P+ + H GY SH GP P RMG SR P+ P P
Sbjct: 278 PSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQASS 319
Query: 241 EY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 298
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D YA
Sbjct: 320 SYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYA 379
Query: 299 VDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 358
V+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++ QA
Sbjct: 380 VERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQA 439
Query: 359 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLLEWE 417
+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLLEWE
Sbjct: 440 SKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWE 499
Query: 418 SKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 454
K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 500 CKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 536
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 492 bits (1266), Expect = e-139
Identities = 262/457 (57%), Positives = 324/457 (70%), Gaps = 26/457 (5%)
Query: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD N
Sbjct: 108 MPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNK 167
Query: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+LNG
Sbjct: 168 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 227
Query: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
ADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +LG+H
Sbjct: 228 ADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AILGEH 282
Query: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
P+ + H GY SH GP P RMG SR P+ P P
Sbjct: 283 PSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQASS 324
Query: 241 EY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 298
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D YA
Sbjct: 325 SYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYA 384
Query: 299 VDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 358
V+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++ QA
Sbjct: 385 VERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQA 444
Query: 359 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLLEWE 417
+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLLEWE
Sbjct: 445 SKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWE 504
Query: 418 SKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 454
K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 505 CKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 541
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 145 bits (365), Expect = 1e-34
Identities = 134/474 (28%), Positives = 210/474 (44%), Gaps = 68/474 (14%)
Query: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------S 57
K QA +E A VNY + G P ++ +S +++ + +R +
Sbjct: 94 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQA 153
Query: 58 VNS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRI 91
VNS VL + N Y +T DVL+ I + G V +I
Sbjct: 154 VNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 213
Query: 92 VIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 150
+ F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ +
Sbjct: 214 ITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 273
Query: 151 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 210
DYT P+L GD QP L A +G P G S G G PP +
Sbjct: 274 DYTRPDLP-SGD---------SQPSLDQTMAAAFGAP--GIISASPYAGAGFPPTFAIPQ 321
Query: 211 RMGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKM 261
G V P+ +G P G A + VL+V L+ ++
Sbjct: 322 AAGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERV 375
Query: 262 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 321
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +S
Sbjct: 376 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 435
Query: 322 K-QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVT 380
K Q +P + G ED + KD+ S +RF P I PS LH N P V+
Sbjct: 436 KHQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 492
Query: 381 EENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
EE+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 493 EEDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 542
Score = 30.8 bits (68), Expect = 2.7
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 295 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 353
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 354 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 406
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 407 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 440
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 142 bits (358), Expect = 6e-34
Identities = 131/474 (27%), Positives = 208/474 (43%), Gaps = 75/474 (15%)
Query: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------S 57
K QA +E A VNY + G P ++ +S +++ + +R +
Sbjct: 94 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQA 153
Query: 58 VNS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRI 91
VNS VL + N Y +T DVL+ I + G V +I
Sbjct: 154 VNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 213
Query: 92 VIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 150
+ F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ +
Sbjct: 214 ITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 273
Query: 151 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 210
DYT P+L GD QP L A + P+ G G PP +
Sbjct: 274 DYTRPDLP-SGD---------SQPSLDQTMAAAFASPYA---------GAGFPPTFAIPQ 314
Query: 211 RMGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKM 261
G V P+ +G P G A + VL+V L+ ++
Sbjct: 315 AAGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERV 368
Query: 262 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 321
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +S
Sbjct: 369 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 428
Query: 322 K-QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVT 380
K Q +P + G ED + KD+ S +RF P I PS LH N P V+
Sbjct: 429 KHQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 485
Query: 381 EENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
EE+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 486 EEDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 535
Score = 30.8 bits (68), Expect = 2.7
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 295 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 353
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 354 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 406
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 407 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 440
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 139 bits (349), Expect = 7e-33
Identities = 126/465 (27%), Positives = 199/465 (42%), Gaps = 76/465 (16%)
Query: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------S 57
K QA +E A VNY + G P ++ +S +++ + +R +
Sbjct: 94 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQA 153
Query: 58 VNS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRI 91
VNS VL + N Y +T DVL+ I + G V +I
Sbjct: 154 VNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 213
Query: 92 VIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 150
+ F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ +
Sbjct: 214 ITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 273
Query: 151 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 210
DYT P+L GD S P+ Q G HG P
Sbjct: 274 DYTRPDLP-SGD--SQPSLDQTMAAAFG---LSVPNVHGAL-----------APLAIPSA 316
Query: 211 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF 270
G P G A + VL+V L+ ++ +F +F
Sbjct: 317 AAAAAAAGRIAIPGLAG------------------AGNSVLLVSNLNPERVTPQSLFILF 358
Query: 271 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QPAIMPG 329
+YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q +P
Sbjct: 359 GVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR 418
Query: 330 QSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD 389
+ G ED + KD+ S +RF P I PS LH N P V+EE+ +
Sbjct: 419 E--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS 475
Query: 390 ELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
G VK F + L++ S +A++ L L+++ +
Sbjct: 476 SNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 516
Score = 30.8 bits (68), Expect = 2.7
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 295 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 353
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 354 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 406
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 407 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 440
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 135 bits (341), Expect = 6e-32
Identities = 123/464 (26%), Positives = 202/464 (43%), Gaps = 53/464 (11%)
Query: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV----- 58
K QA +E A VNY ++ P ++ YS +++ + +R+
Sbjct: 94 KSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQA 153
Query: 59 -------------------------NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 93
+ VL I N Y +T +VL+ I + G V +I+
Sbjct: 154 VSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIIT 213
Query: 94 FRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDY 152
F KN QA++++ +A AK +L+G +IY+ CCTL+I+++K T LNV N+ + D+
Sbjct: 214 FTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDF 273
Query: 153 TNPNL-SGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 211
T +L +G G P +PP+ A +G P + G+ P +
Sbjct: 274 TRLDLPTGDGQPSL-------EPPMA----AAFGAPGIISSPYAGAAGFAPAIGFPQATG 322
Query: 212 MGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFC 271
+ P GP P P + VL+V L+ + +F +F
Sbjct: 323 LSVPAVPGALGPLTITSSAVTGRMAIPGASGIP--GNSVLLVTNLNPDLITPHGLFILFG 380
Query: 272 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI-MPGQ 330
+YG+V +VK M +K A+V+MAD A+ HL+ ++G+ L +SK A+ +P +
Sbjct: 381 VYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPRE 440
Query: 331 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE 390
G ED + KDFS S +RF P I PS LH N P VT ++ + E
Sbjct: 441 --GQEDQGLT-KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIE 497
Query: 391 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
G SVK F + L++ S +A++ L L+++ +
Sbjct: 498 AG----CSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL 537
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 88.6 bits (218), Expect = 1e-17
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 31/195 (15%)
Query: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPG------------- 50
K QA +E A VNY + ++ P ++ YS +++
Sbjct: 94 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAV 153
Query: 51 ----------------DSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIF 94
+S + + + VL I N Y +T DVL+ I + G V +I+ F
Sbjct: 154 TAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF 213
Query: 95 RKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYT 153
KN QA++++ +AQ+AK +L+G +IY+ CCTL+I+++K LNV N+ + DYT
Sbjct: 214 TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYT 273
Query: 154 NPNL-SGQGDPGSNP 167
P+L SG G P +P
Sbjct: 274 RPDLPSGDGQPALDP 288
Score = 84.0 bits (206), Expect = 3e-16
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 250 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 309
VL+V L++ + +F +F +YG+V++VK + +K +A+++MADG A+ HLN
Sbjct: 339 VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQ 398
Query: 310 FMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN 368
M+G+ + V +SK + +P + GL+D + KDF S +RF P I PS
Sbjct: 399 KMYGKIIRVTLSKHQTVQLPRE--GLDDQGLT-KDFGNSPLHRFKKPGSKNFQNIFPPSA 455
Query: 369 VLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGF 428
LH N P V EE+ + G +VK F + + LL+ + +A++ L
Sbjct: 456 TLHLSNIPPSVAEEDLRTLFANTG----GTVKAFKFFQDHKMA-LLQMATVEEAIQALID 510
Query: 429 LNHYQM 434
L++Y +
Sbjct: 511 LHNYNL 516
Score = 33.9 bits (76), Expect = 0.31
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 48 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 107
R G S N+VLL + LN +T L+T+ G VQR+ I A+++
Sbjct: 326 RVGMPGVSAGGNTVLLVSNLNE-EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD 384
Query: 108 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDP 163
+Q A LNG +Y +++ +K + + + D T D+ N L P
Sbjct: 385 GNQSQLAMNHLNGQKMYGK--IIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKP 442
Query: 164 GS 165
GS
Sbjct: 443 GS 444
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 69.7 bits (169), Expect = 5e-12
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 266 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QP 324
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q
Sbjct: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
Query: 325 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 384
+P + G ED + KD+ S +RF P I PS LH N P V+EE+
Sbjct: 80 VQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 136
Query: 385 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
+ G VK F + L++ S +A++ L L+++ +
Sbjct: 137 KVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 73 ITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 132
+T L+ + G VQR+ I A+V+ AQ A + LNG ++ ++I
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK--PIRI 72
Query: 133 EYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDPGS 165
+K + + + Q+ T DY N L PGS
Sbjct: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 49.7 bits (117), Expect = 6e-06
Identities = 43/120 (35%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 155 PNLSGQ------GDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYE 208
P L GQ GD G+ + Q+ PP G + P G +G PPPP +
Sbjct: 49 PPLGGQQSQPSAGD-GNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP--Q 105
Query: 209 GRRMGPPV-GGHRRGP--------SRYGPQYGHPPPPP-----PPPEYG-----PHADSP 249
GR GPP GGH R P + G Q G PPPPP PPP+ G P SP
Sbjct: 106 GRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSP 165
Score = 33.9 bits (76), Expect = 0.31
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 20/59 (33%)
Query: 211 RMGPPVGGHRRGPSR------YGPQYGHPP--------PPPP------PPEYGPHADSP 249
R GPP+GG + PS GPQ G P PPPP PP+ G H P
Sbjct: 46 RQGPPLGGQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 49.7 bits (117), Expect = 6e-06
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Query: 158 SGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPV- 216
+G G+ P Q+ PP G + P G +G PPPP +GR GPP
Sbjct: 60 AGDGNQNDGP---QQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP--QGRPQGPPQQ 114
Query: 217 GGHRRGP--------SRYGPQYGHPPPPP-----PPPEYG-----PHADSP 249
GGH R P + G Q G PPPPP PPP+ G P SP
Sbjct: 115 GGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSP 165
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 20/59 (33%)
Query: 211 RMGPPVGGHRRGPS------RYGPQYGHPP--------PPPP------PPEYGPHADSP 249
R GPP+GG + PS GPQ G P PPPP PP+ G H P
Sbjct: 46 RQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 49.7 bits (117), Expect = 6e-06
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Query: 158 SGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPV- 216
+G G+ P Q+ PP G + P G +G PPPP +GR GPP
Sbjct: 60 AGDGNQNDGP---QQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP--QGRPQGPPQQ 114
Query: 217 GGHRRGP--------SRYGPQYGHPPPPP-----PPPEYG-----PHADSP 249
GGH R P + G Q G PPPPP PPP+ G P SP
Sbjct: 115 GGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSP 165
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 20/59 (33%)
Query: 211 RMGPPVGGHRRGPS------RYGPQYGHPP--------PPPP------PPEYGPHADSP 249
R GPP+GG + PS GPQ G P PPPP PP+ G H P
Sbjct: 46 RQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 48.1 bits (113), Expect = 2e-05
Identities = 37/97 (38%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 161 GDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEG----------R 210
G PG P Q PP G GPHGG GPPPP G
Sbjct: 632 GGPGG-PKGMQHFPPGPG---GPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPM 687
Query: 211 RMGPPVGGHRRGPSRY----GPQYGHPPPPPPPPEYG 243
R GP GG GP Y G + G+ PPPPPPP G
Sbjct: 688 RGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRG 724
Score = 32.0 bits (71), Expect = 1.2
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 161 GDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP-------HYEGRRMG 213
G P S+P++ + P D + PHG G+ P P H+ G
Sbjct: 590 GSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGG 649
Query: 214 PPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
P G H GP+ PPPPP P D P
Sbjct: 650 PMPGPHGGPGGPVGPRL--LGPPPPPRGGDPFWDGP 683
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 178 GDHPAEYGGPHGGYHSH-------YHDEGYGPPPPHYEGRRMGPPVG-----GHRRGPSR 225
G H G HGG H H + + PPPH GP G GH G S
Sbjct: 843 GGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSH 902
Query: 226 YGPQYGHP 233
G P
Sbjct: 903 GGDMSNRP 910
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 47.4 bits (111), Expect = 3e-05
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 163 PGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEG---YGPPPPHYEGRRMG-PPVGG 218
P +P K + PP G+ P G EG GPPPP G+ G PP GG
Sbjct: 155 PPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPP---GKPQGPPPAGG 211
Query: 219 HRRGPSRYGPQYGHPPPPPPPPEYG 243
+ + P P G P PPPPP+ G
Sbjct: 212 NPQQPQ--APPAGKPQGPPPPPQGG 234
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPP---PPHYEGRRMG--P 214
QG P N+ Q PP G E P GG S G P PP + G P
Sbjct: 58 QGPPPQGGNQSQGPPPPPGK--PEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPP 115
Query: 215 PVGGHRRGPSRYGPQYGHPPPPP-----PPPEYGPHADSP 249
P G R P + G Q PPPPP PPP+ G + P
Sbjct: 116 PPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGP 155
Score = 38.9 bits (89), Expect = 0.010
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 24/100 (24%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPA--EYGGPHGGYHSHYHDEGYGPPPPHYE--------- 208
+G P N+ Q PP HP E P GG S +G PPP E
Sbjct: 79 EGRPPQGGNQSQGPPP----HPGKPERPPPQGGNQS----QGTPPPPGKPERPPPQGGNQ 130
Query: 209 GRRMGPPVGGHRRGPSRYGPQYGHPPPPP-----PPPEYG 243
R PP G R P + G Q PPP P PPP+ G
Sbjct: 131 SHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEG 170
Score = 35.8 bits (81), Expect = 0.083
Identities = 23/83 (27%), Positives = 30/83 (36%)
Query: 164 GSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGP 223
G N + R PP + P GG + + GPPP R G +GP
Sbjct: 127 GGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGP 186
Query: 224 SRYGPQYGHPPPPPPPPEYGPHA 246
+ PPPP P+ P A
Sbjct: 187 PQQEGNKPQGPPPPGKPQGPPPA 209
Score = 32.3 bits (72), Expect = 0.91
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 202 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
PPPP G+ GPP G G Q PPPPP PE P
Sbjct: 51 PPPP---GKPQGPPPQG--------GNQSQGPPPPPGKPEGRP 82
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 155 PNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGP 214
P G G P + + PP G +P + P G + GPPPP GR P
Sbjct: 187 PQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAG-------KPQGPPPPPQGGRPPRP 239
Query: 215 PVG 217
G
Sbjct: 240 AQG 242
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 46.2 bits (108), Expect = 6e-05
Identities = 36/103 (34%), Positives = 40/103 (38%), Gaps = 17/103 (16%)
Query: 159 GQGDPGSNPNKRQRQPPLLGDHPA------EYGGPHGGYHSHYHDEGYGPPPPHYEGRRM 212
G G PG + PP HP + GPHG H H G G PP M
Sbjct: 282 GAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGM 341
Query: 213 G----PPVGGHRRGPSRYGPQYGHPPPPP------PPPEYGPH 245
PP+G RGP +G GHP P P PPP PH
Sbjct: 342 PHPGPPPMGMPPRGPP-FGSPMGHPGPMPPHGMRGPPPLMPPH 383
Score = 39.3 bits (90), Expect = 0.007
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 155 PNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGP 214
P GQ P P PP +G P G P G H GP PPH G R P
Sbjct: 327 PGSGGQPPPRPPPGMPHPGPPPMGMPPR--GPPFGSPMGHP-----GPMPPH--GMRGPP 377
Query: 215 PVGGHR--RGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
P+ GP R P YG+ P PPP P P
Sbjct: 378 PLMPPHGYTGPPR-PPPYGYQRGPLPPPRPTPRPPVP 413
Score = 36.2 bits (82), Expect = 0.063
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 174 PPLLGDHPAEYGGPHGGYHSHYHDEGYGPPP---PHYEGRRMG-PPVGGHRRGPSRYGPQ 229
P G P G P G+ H H + PP PH +M G H G GP
Sbjct: 268 PGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPP 327
Query: 230 YGHPPPPPPPPEYGPHADSP 249
PPP PP PH P
Sbjct: 328 GSGGQPPPRPPPGMPHPGPP 347
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 163 PGSNPNKRQRQPPLLGDHPAE---YGGPHGGYHSHYHDEGYGPPP--PHYEGRRMGPPVG 217
P S + Q +PP + P+E Y G HGG G G P PH + G
Sbjct: 355 PPSLMSTTQSRPPWMNSGPSESRPYHGMHGG--------GPGGPGGGPHSFPHPLPSLTG 406
Query: 218 GHRRGPSRYGPQYGHPP---PPPPPPEYGPH 245
GH P ++ P PP PPPPP GPH
Sbjct: 407 GHGGHPMQHNPNGPPPPWMQPPPPPMNQGPH 437
Score = 38.1 bits (87), Expect = 0.017
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 32/111 (28%)
Query: 159 GQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEG------YGPPPPHYEGRRM 212
G G PG P+ P L G HGG+ ++ G PPPP +G
Sbjct: 386 GPGGPGGGPHSFPHPLPSLT-------GGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHP 438
Query: 213 ----GPPVGGHRRGPSRYG---------------PQYGHPPPPPPPPEYGP 244
GPP G + G P G PPPPPPP P
Sbjct: 439 PGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQP 489
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/115 (28%), Positives = 41/115 (35%), Gaps = 25/115 (21%)
Query: 154 NPNLSGQGDPGSNPNKRQRQPPLL--GDHPAEYGGPH------------GGYHSHYHDEG 199
NPN G P Q PP + G HP + GP G + + +G
Sbjct: 416 NPN-------GPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKG 468
Query: 200 YGPPPPHYEGRRMGPPVGGHR----RGPSRYGPQYGHPPPPPPPPEYGPHADSPV 250
PPPP PP G GP Q PPPPPPP + +P+
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPL 523
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 163 PGSNPNKRQRQPPLLGDHPAE---YGGPHGGYHSHYHDEGYGPPP--PHYEGRRMGPPVG 217
P S + Q +PP + P+E Y G HGG G G P PH + G
Sbjct: 355 PPSLMSTTQSRPPWMNSGPSESRPYHGMHGG--------GPGGPGGGPHSFPHPLPSLTG 406
Query: 218 GHRRGPSRYGPQYGHPP---PPPPPPEYGPH 245
GH P ++ P PP PPPPP GPH
Sbjct: 407 GHGGHPMQHNPNGPPPPWMQPPPPPMNQGPH 437
Score = 38.1 bits (87), Expect = 0.017
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 32/111 (28%)
Query: 159 GQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEG------YGPPPPHYEGRRM 212
G G PG P+ P L G HGG+ ++ G PPPP +G
Sbjct: 386 GPGGPGGGPHSFPHPLPSLT-------GGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHP 438
Query: 213 ----GPPVGGHRRGPSRYG---------------PQYGHPPPPPPPPEYGP 244
GPP G + G P G PPPPPPP P
Sbjct: 439 PGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQP 489
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/115 (28%), Positives = 41/115 (35%), Gaps = 25/115 (21%)
Query: 154 NPNLSGQGDPGSNPNKRQRQPPLL--GDHPAEYGGPH------------GGYHSHYHDEG 199
NPN G P Q PP + G HP + GP G + + +G
Sbjct: 416 NPN-------GPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKG 468
Query: 200 YGPPPPHYEGRRMGPPVGGHR----RGPSRYGPQYGHPPPPPPPPEYGPHADSPV 250
PPPP PP G GP Q PPPPPPP + +P+
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPL 523
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 163 PGSNPNKRQRQPPLLGDHPAE---YGGPHGGYHSHYHDEGYGPPP--PHYEGRRMGPPVG 217
P S + Q +PP + P+E Y G HGG G G P PH + G
Sbjct: 355 PPSLMSTTQSRPPWMNSGPSESRPYHGMHGG--------GPGGPGGGPHSFPHPLPSLTG 406
Query: 218 GHRRGPSRYGPQYGHPP---PPPPPPEYGPH 245
GH P ++ P PP PPPPP GPH
Sbjct: 407 GHGGHPMQHNPNGPPPPWMQPPPPPMNQGPH 437
Score = 38.1 bits (87), Expect = 0.017
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 32/111 (28%)
Query: 159 GQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEG------YGPPPPHYEGRRM 212
G G PG P+ P L G HGG+ ++ G PPPP +G
Sbjct: 386 GPGGPGGGPHSFPHPLPSLT-------GGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHP 438
Query: 213 ----GPPVGGHRRGPSRYG---------------PQYGHPPPPPPPPEYGP 244
GPP G + G P G PPPPPPP P
Sbjct: 439 PGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQP 489
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/115 (28%), Positives = 41/115 (35%), Gaps = 25/115 (21%)
Query: 154 NPNLSGQGDPGSNPNKRQRQPPLL--GDHPAEYGGPH------------GGYHSHYHDEG 199
NPN G P Q PP + G HP + GP G + + +G
Sbjct: 416 NPN-------GPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKG 468
Query: 200 YGPPPPHYEGRRMGPPVGGHR----RGPSRYGPQYGHPPPPPPPPEYGPHADSPV 250
PPPP PP G GP Q PPPPPPP + +P+
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPL 523
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR---RMGPPV 216
QG+P P QPPL P P G + PPPP MG V
Sbjct: 561 QGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGV 620
Query: 217 GGHRRGPSRYGPQYGHPPPPPPPP 240
G P +G PP PPPPP
Sbjct: 621 AGM--------PPFGMPPAPPPPP 636
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 45.4 bits (106), Expect = 1e-04
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 160 QGD----PGSNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRM 212
QGD P S P K Q PP G+ P P G G ++ GPPPP G+
Sbjct: 104 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQ 160
Query: 213 GPPVGGHRRG---------PSRYGPQYGHPPPPPPPPEYGPHADSP 249
GPP G + P PQ G+ P PPPP P P
Sbjct: 161 GPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 206
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 163 PGSNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRMGPPVGGH 219
P S P K Q PP G+ P P G G ++ GPPPP G+ GPP G
Sbjct: 50 PPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQGPPPQGD 106
Query: 220 RR--------GPSRYGPQYGHPPPPPPPPEYGPHADSP 249
+ P PQ G+ P PPPP P P
Sbjct: 107 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 144
Score = 42.7 bits (99), Expect = 7e-04
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 165 SNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRR 221
S P K Q PP G+ P P G G ++ GPPPP G+ GPP G +
Sbjct: 175 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQGPPPQGDNK 231
Query: 222 G---------PSRYGPQYGHPPPPPPPPEYGPHADSP 249
P PQ G+ P PPPP P P
Sbjct: 232 SQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Score = 42.4 bits (98), Expect = 9e-04
Identities = 34/97 (35%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 165 SNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRMG-PPVGGHR 220
S P K Q PP G+ P P G G ++ GPPPP G+ G PP GG +
Sbjct: 237 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQGPPPQGGSK 293
Query: 221 RGPSRYGPQYGHPPPP--------PPPPEYGPHADSP 249
SR P PPP PPPP P P
Sbjct: 294 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 330
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/97 (35%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGP--HGGYHSHYHDEGYGPP--PPHYEGRRMG-- 213
QG P NK Q PP P + GP GG S G P PP EG
Sbjct: 326 QGPPPQGGNKPQGPPP-----PGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGP 380
Query: 214 -PPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
PP GG+ + P P G P PP PP+ G + P
Sbjct: 381 PPPAGGNPQQPQ--APPAGQPQGPPRPPQGGRPSRPP 415
Score = 40.0 bits (92), Expect = 0.004
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 165 SNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRR 221
S P K Q PP G+ P P G G ++ GPPPP G+ GPP G +
Sbjct: 299 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQGPPPQGGSK 355
Query: 222 GPSRYGP---------QYGHPPPPPPPPEYG 243
S P Q G+ P PPPP G
Sbjct: 356 SRSARSPPGKPQGPPQQEGNNPQGPPPPAGG 386
Score = 38.1 bits (87), Expect = 0.017
Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGP--HGGYHSHYH----DEGYGPPPPHYEGRRMG 213
QG P NK Q PP P + GP GG S + GPPP +
Sbjct: 264 QGPPPQGGNKPQGPPP-----PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGP 318
Query: 214 PPVGGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
PP G +GP G PPPP P+ P
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 349
Score = 36.2 bits (82), Expect = 0.063
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 26/95 (27%)
Query: 160 QGDP--GSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVG 217
QG P G + ++ R PP P GG ++ GPPPP G+ GPP
Sbjct: 284 QGPPPQGGSKSRSSRSPPGKPQGPPPQGG----------NQPQGPPPP--PGKPQGPPPQ 331
Query: 218 GHRRGPSRYGPQYGHPPPP----PPPPEYGPHADS 248
G + PQ PPPP PPP+ G + S
Sbjct: 332 GGNK------PQ--GPPPPGKPQGPPPQGGSKSRS 358
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 170 RQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQ 229
++ P L+ +P + P GG ++ GPP P G+ GPP G + PQ
Sbjct: 25 QEESPSLIAGNP-QGAPPQGG------NKPQGPPSP--PGKPQGPPPQGGNQ------PQ 69
Query: 230 YGHPPPPPPPPEYGP 244
PPPPP GP
Sbjct: 70 ---GPPPPPGKPQGP 81
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 153 TNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGP-HGGYHSHYHDEG-----YGPPPPH 206
T+ +SG+G S + + + P G P YG P H YH H + PPP
Sbjct: 435 TSSYMSGEGYQ-SLQSMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPAS 493
Query: 207 YEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVL 251
+ + PP G+ P Y P + PPP PP P P L
Sbjct: 494 FPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPGL 538
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/111 (34%), Positives = 43/111 (38%), Gaps = 24/111 (21%)
Query: 163 PGSNPNKRQRQPPLLGDHP----AEYGGPHGGYHSH--YHDEGYGPPPPHYEGR---RMG 213
PGS+ + + PP + P A+ GP G G GPPPP E R R G
Sbjct: 868 PGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWG 927
Query: 214 PPVGGHRRG---------PSRYGPQYGHPPP------PPPPPEYGPHADSP 249
P G RRG P R GP PPP PP P E G P
Sbjct: 928 PRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKP 978
Score = 32.3 bits (72), Expect = 0.91
Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 178 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 237
G P E GP H H HD G P GPP RG P + +PP P
Sbjct: 212 GRGPDELEGPDSKLH-HGHDPRGGLQPS-------GPPQFPPYRGMM---PPFMYPPYLP 260
Query: 238 PPPEYGP 244
PP YGP
Sbjct: 261 FPPPYGP 267
Score = 30.0 bits (66), Expect = 4.5
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 160 QGDPGSNPNKRQRQPPLLGDH---PAEY---GGPHGGYHSHYHDEGYGPPPPHYEGRRMG 213
+G PGS P +R P GD P E GP G S D G P P R G
Sbjct: 1699 EGPPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERSQRTDRGTEPGPIR-PSHRPG 1757
Query: 214 PPV 216
PPV
Sbjct: 1758 PPV 1760
>gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
Length = 82
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/68 (44%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 186 GPHGGYH--SHYHDEGY-GPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPP-PPPPE 241
GP G H H H G+ GPPP H G GPP GP GP GH P P PPP
Sbjct: 4 GPKGHCHCGGHGHPPGHCGPPPGHGPG-PCGPP---PHHGPGPCGPPPGHGPGPCGPPPH 59
Query: 242 YGPHADSP 249
+GP P
Sbjct: 60 HGPGPCGP 67
Score = 43.9 bits (102), Expect = 3e-04
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 180 HPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPP 239
HP + GP G H G PPPH+ GPP G H GP P +G P P PP
Sbjct: 16 HPPGHCGPPPG-----HGPGPCGPPPHHGPGPCGPPPG-HGPGPCGPPPHHG-PGPCGPP 68
Query: 240 PEYGPHADSP 249
P +GP P
Sbjct: 69 PGHGPGHPPP 78
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 44.7 bits (104), Expect = 2e-04
Identities = 37/100 (37%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 160 QGDPGSNPNKRQR-QPPLLGDHPAEYGGPH--GGYHSHYHDEGYGP--------PPPHYE 208
QG PG N+ Q ++G P E GPH GG H E GP PPP +
Sbjct: 785 QGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPP--Q 842
Query: 209 GRRMGPPVGGHRRGP----SRYGPQYGHPPPPPPPPEYGP 244
G +GPP RGP S+ GP G PPP GP
Sbjct: 843 GSMLGPPQ--ELRGPPGSQSQQGPPQGSLGPPPQGGMQGP 880
Score = 36.6 bits (83), Expect = 0.049
Identities = 33/97 (34%), Positives = 37/97 (38%), Gaps = 20/97 (20%)
Query: 155 PNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYE--GRRM 212
P L QG G R PPL +P + GP+ G + GPP H R
Sbjct: 932 PGLGQQGAQG-------RIPPL---NPGQGPGPNKG-------DSRGPPNHHMGPMSERR 974
Query: 213 GPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GG GP R GP G PP GPH D P
Sbjct: 975 HEQSGGPEHGPER-GPFRGGQDCRGPPDRRGPHPDFP 1010
Score = 34.7 bits (78), Expect = 0.18
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 33/147 (22%)
Query: 130 LKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKR--QRQPP------LLGDHP 181
+K+E K T+ + + + T YTNP L Q K+ Q QPP LLG P
Sbjct: 529 IKLEEKKKTQAEI-EQEMATLQYTNPQLLEQLKIERLAQKQVEQIQPPPSSGTPLLGPQP 587
Query: 182 AEYGGP-----------HGGYHSHYHDEGYGPP-------PPHYEGRR--MGPPVGGHRR 221
GP H + GPP PP +G+ GPP+
Sbjct: 588 FPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGG 647
Query: 222 GPSRY-GPQYGHPPP---PPPPPEYGP 244
GP + GPQ PP P P +GP
Sbjct: 648 GPQGFMGPQGPQGPPQGLPRPQDMHGP 674
Score = 32.3 bits (72), Expect = 0.91
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 160 QGDPGSNPNKRQRQPPL-LGDHPAEYG--------GPHGGYHSHYHDEGYGPPPPHYEGR 210
QG P P + P + HP +G GP G H GPP P
Sbjct: 659 QGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIG 718
Query: 211 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
GPP GP G PP P GP
Sbjct: 719 PQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGP 752
Score = 30.8 bits (68), Expect = 2.7
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 157 LSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPV 216
L QG PG P P + GP G H GPP P GPP
Sbjct: 687 LGPQGPPG----------PQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPG 736
Query: 217 GGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
+GP GP+ PP P + GP
Sbjct: 737 TQGMQGPP--GPRGMQGPPHPHGIQGGP 762
Score = 29.3 bits (64), Expect = 7.7
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 156 NLSGQGDPGSN-----PNKRQRQPPLLGDHP-AEYGGPHGGYHSHYHDEGYGPPPPHYEG 209
+L QG PG+ P R Q P HP GGP G GP
Sbjct: 728 HLGPQGPPGTQGMQGPPGPRGMQGP---PHPHGIQGGP--GSQGIQGPVSQGPLMGLNPR 782
Query: 210 RRMGPPVGGHRRGPSRYGPQYGHPP-----PPPP 238
GPP +GP+ G GHPP P PP
Sbjct: 783 GMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPP 816
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/105 (34%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 160 QGD----PGSNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRM 212
QGD P S P K Q PP G+ P P G G + GPPPP G+
Sbjct: 83 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP---GKPQ 139
Query: 213 GPPVGGHRR--------GPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GPP G + P PQ G+ P PPPP P P
Sbjct: 140 GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 184
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/105 (34%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 160 QGD----PGSNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRM 212
QGD P S P K Q PP G+ P P G G + GPPPP G+
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPP---GKPQ 200
Query: 213 GPPVGGHRRGPSRYGPQYGHPPPP--------PPPPEYGPHADSP 249
GPP G + S+ P PPP PPPP P P
Sbjct: 201 GPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 245
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 160 QGDPG----SNPNKRQRQPPLLGDHPAEYGGPHG---GYHSHYHDEGYGPPPPHYEGRRM 212
QGD S P K Q PP G+ P P G G ++ GPPPP G+
Sbjct: 205 QGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP---GKPQ 261
Query: 213 GPPVGGHRRGPSRYGP---------QYGHPPPPPPPPEYG 243
GPP G + S P Q G+ P PPPP G
Sbjct: 262 GPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGG 301
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/97 (35%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGP--HGGYHSHYHDEGYGPP--PPHYEGRRMG-- 213
QG P NK Q PP P + GP GG S G P PP EG
Sbjct: 241 QGPPPQGGNKPQGPPP-----PGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGP 295
Query: 214 -PPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
PP GG+ + P P G P PP PP+ G + P
Sbjct: 296 PPPAGGNPQQPQ--APPAGQPQGPPRPPQGGRPSRPP 330
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 146 DQDTWDYTNPNLSGQGDPGSNP---NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGP 202
++D +P+L G +P NK Q PP G P GG ++ GP
Sbjct: 20 NEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP--PPQGG------NKPQGP 71
Query: 203 PPPHYEGRRMGPPVGGHRR--------GPSRYGPQYGHPPPPPPPPEYGPHADSP 249
PPP G+ GPP G + P PQ G+ P PPPP P P
Sbjct: 72 PPP---GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 123
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 163 PGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRG 222
P P K Q PP G+ P G P G + GPPP + R P G +
Sbjct: 50 PPPPPGKPQGPPPQGGNKPQ--GPPPPG-------KPQGPPPQGDKSRSPRSPPGKPQGP 100
Query: 223 PSRYGPQYGHPPPPP-----PPPEYGPHADSP 249
P + G Q PPPPP PPP+ G P
Sbjct: 101 PPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGP 132
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 155 PNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGP 214
P G+ G P + + PP GD P G + GPPP + P
Sbjct: 183 PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG--------KPQGPPPQGGNQPQGPP 234
Query: 215 PVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHA 246
P G +GP G PPPP P+ GP A
Sbjct: 235 PPPGKPQGPPPQGGNKPQGPPPPGKPQ-GPPA 265
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 43.9 bits (102), Expect = 3e-04
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 161 GDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMG-PPVGGH 219
G PG P + PPL G P+ G PPP + G+ G PP+G
Sbjct: 248 GPPGPPPPGQVLPPPLAGP-------PNRGDRP--------PPPVLFPGQPFGQPPLGPL 292
Query: 220 RRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GP P YG PP PPPP + P P
Sbjct: 293 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322
Score = 38.5 bits (88), Expect = 0.013
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 155 PNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGY-------HSHYHDEGYGPPPPHY 207
P + G G P P +Q PP G P GP G H G PP PH
Sbjct: 298 PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHV 357
Query: 208 EGRRMGPPVG-----GHRRGPSRYGPQYGHPPPPPPPPEYGP 244
PP RGP P YG PPP +YGP
Sbjct: 358 NPAFFPPPTNSGMPTSDSRGPPPTDP-YGR-PPPYDRGDYGP 397
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 201 GPPPPHYEGRR-MGPPVGGHRRGPSRYGPQYGHPPP----PPP---PPEYGPHADSPVL 251
GPPPP G+ PP+G P GP G PPP PPP PP G PVL
Sbjct: 225 GPPPPFPAGQTPPRPPLG----PPGPPGPP-GPPPPGQVLPPPLAGPPNRGDRPPPPVL 278
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 199 GYGPPPPHYEGRRMGPPVGGH--RRGPSRYGPQYGHPPPP----PPP--PEYGPHAD 247
GYGPPP ++ PP G R P GP PPP PPP P PH +
Sbjct: 302 GYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 358
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 43.1 bits (100), Expect = 5e-04
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 187 PHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPH 245
PH +H H+H + PP P + P G R+ P PPPPPPPP H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPD--EPGSERHHPAPPPPPPPPPPPPLAQH 710
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 217 GGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GG GP G PPPPPPPP A +P
Sbjct: 273 GGGLLGPHLLGAP---PPPPPPPPPLAELAGAP 302
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.1 bits (100), Expect = 5e-04
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 187 PHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPH 245
PH +H H+H + PP P + P G R+ P PPPPPPPP H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPD--EPGSERHHPAPPPPPPPPPPPPLAQH 710
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 217 GGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GG GP G PPPPPPPP A +P
Sbjct: 273 GGGLLGPHLLGAP---PPPPPPPPPLAELAGAP 302
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.1 bits (100), Expect = 5e-04
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 187 PHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPH 245
PH +H H+H + PP P + P G R+ P PPPPPPPP H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPD--EPGSERHHPAPPPPPPPPPPPPLAQH 710
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 217 GGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 249
GG GP G PPPPPPPP A +P
Sbjct: 273 GGGLLGPHLLGAP---PPPPPPPPPLAELAGAP 302
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 42.7 bits (99), Expect = 7e-04
Identities = 34/95 (35%), Positives = 38/95 (40%), Gaps = 29/95 (30%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGH 219
+G P NK Q PP HP G P G PPP + PP G
Sbjct: 226 EGPPSQGGNKPQGPPP----HP---GKPQG-------------PPPQEGNKPQRPPPPGR 265
Query: 220 RRGPSRYG--PQYGHPPP------PPPPPEYG-PH 245
+GP G PQ PPP PPPPP+ G PH
Sbjct: 266 PQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPH 300
Score = 38.9 bits (89), Expect = 0.010
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 160 QGDPGSNPNKRQRQPPLLG--DHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVG 217
+G P N+ Q PP G + P GG + + GPPP + PP
Sbjct: 142 EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP 201
Query: 218 GHRRGPSRYGPQYGHPPPPPPPPEYGP 244
G GP G PPP P GP
Sbjct: 202 GKPEGPPPQGGNQSQGPPPRPGKPEGP 228
Score = 38.1 bits (87), Expect = 0.017
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGP--HGGYHSH----YHDEGYGPPPPHYEGRRMG 213
+G P N+ Q PP HP + GP GG S + GPPP +
Sbjct: 163 EGPPPQGGNQSQGPPP----HPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 218
Query: 214 PPVGGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
PP G GP G PPP P GP
Sbjct: 219 PPRPGKPEGPPSQGGNKPQGPPPHPGKPQGP 249
Score = 37.7 bits (86), Expect = 0.022
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 160 QGDPGSNPNKRQRQPPLLG--DHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVG 217
+G P N+ Q PP G + P GG + GPPP + PP
Sbjct: 100 EGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 159
Query: 218 GHRRGPSRYGPQYGHPPPPPPPPEYGP 244
G GP G PPP P GP
Sbjct: 160 GKPEGPPPQGGNQSQGPPPHPGKPEGP 186
Score = 37.4 bits (85), Expect = 0.028
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 160 QGDPGSNPNKRQRQPPLLG--DHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVG 217
+G P N+ Q PP G + P GG + GPPP + PP
Sbjct: 121 EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHP 180
Query: 218 GHRRGPSRYGPQYGHPPPPPPPPEYGP 244
G GP G PPP P GP
Sbjct: 181 GKPEGPPPQGGNQSQGPPPRPGKPEGP 207
Score = 36.6 bits (83), Expect = 0.049
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSH----YHDEGYGPPPPHYEGRRMGPP 215
+G P N+ Q PP G + P GG S + GPPP + PP
Sbjct: 79 EGPPPQGGNQSQGPPPRPGKPEGQ--PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 136
Query: 216 VGGHRRGPSRYGPQYGHPPPPPPPPEYGP 244
G GP G PPP P GP
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPEGP 165
Score = 36.2 bits (82), Expect = 0.063
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 28/108 (25%)
Query: 160 QGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMG-PPVGG 218
+G P N+ Q PP G E P GG ++ GPPP G+ G PP GG
Sbjct: 58 EGRPPQGGNQSQGPPPRPGK--PEGPPPQGG------NQSQGPPP--RPGKPEGQPPQGG 107
Query: 219 HRR--GPSRYGPQYGHPP--------PPP-------PPPEYGPHADSP 249
++ P R G G PP PPP PPP+ G + P
Sbjct: 108 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 155
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 154 NPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMG 213
N ++S + P K + + P G+ P P G + G PP +
Sbjct: 20 NEDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPG--------KPEGRPPQGGNQSQGP 71
Query: 214 PPVGGHRRGPSRYGPQYGHPPPPPP------PPEYGPHADSP 249
PP G GP G PPP P PP+ G + P
Sbjct: 72 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGP 113
Score = 30.8 bits (68), Expect = 2.7
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 160 QGDPGSNPNKRQRQPPL--------LGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 211
QG P NK QR PP G +P + P G + GPPPP GR
Sbjct: 247 QGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAG-------KPQGPPPPPQGGRP 299
Query: 212 MGPPVG 217
PP G
Sbjct: 300 HRPPQG 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,758,033
Number of Sequences: 37866
Number of extensions: 1426789
Number of successful extensions: 14795
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 420
Number of HSP's that attempted gapping in prelim test: 9704
Number of HSP's gapped (non-prelim): 3360
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.