PTBP1 29255

Name: PTBP1	Sequence: fasta or formatted (557aa)		NCBI GI: 4506243
Description: polypyrimidine tract-binding protein 1 isoform a		Referenced in: hnRNP RNases and RNA Stability Capping and Splicing
Other entries for this name: alt prot [550aa] polypyrimidine tract-binding protein 1 isoform b alt prot [531aa] polypyrimidine tract-binding protein 1 isoform c alt prot [197aa] polypyrimidine tract-binding protein 1 isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.6 59 8 C cysteine 0.5 3 2 D aspartate 4.5 25 1 E glutamate 3.1 17 2 F phenylalanine 4.7 26 2 G glycine 7.5 42 2 H histidine 2.7 15 2 I isoleucine 5.7 32 2 K lysine 5.9 33 2 L leucine 9.5 53 2 M methionine 2.2 12 1 N asparagine 6.6 37 2 P proline 5.9 33 2 Q glutamine 5.4 30 1 R arginine 3.2 18 1 S serine 8.8 49 2 T threonine 4.3 24 1 V valine 6.8 38 2 W tryptophan 0.0 0 0 Y tyrosine 2.0 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 polypyrimidine tract-binding protein 1 isoform a [Hom... PTBP1 0.980 polypyrimidine tract-binding protein 1 isoform b [Ho... PTBP1 0.937 polypyrimidine tract-binding protein 1 isoform c [Ho... ROD1 0.754 ROD1 regulator of differentiation 1 PTBP2 0.702 polypyrimidine tract binding protein 2 PTBP1 0.324 polypyrimidine tract-binding protein 1 isoform d [Ho... HNRPLL 0.137 heterogeneous nuclear ribonucleoprotein L-like isof... HNRPLL 0.137 heterogeneous nuclear ribonucleoprotein L-like isofo... HNRNPL 0.128 heterogeneous nuclear ribonucleoprotein L isoform a ... HNRNPL 0.112 heterogeneous nuclear ribonucleoprotein L isoform b ... RBM20 0.051 RNA binding motif protein 20 MATR3 0.028 matrin 3 MATR3 0.028 matrin 3 ELAVL4 0.027 ELAV-like 4 isoform 1 RBM4B 0.023 RNA binding motif protein 4B RBM4 0.023 RNA binding motif protein 4 NONO 0.022 non-POU domain containing, octamer-binding isoform ... NONO 0.022 non-POU domain containing, octamer-binding isoform ... NONO 0.022 non-POU domain containing, octamer-binding isoform 1... SNRPB2 0.022 small nuclear ribonucleoprotein polypeptide B'' [Hom... SNRPB2 0.022 small nuclear ribonucleoprotein polypeptide B'' [Homo... ELAVL3 0.021 ELAV-like protein 3 isoform 1 ELAVL3 0.021 ELAV-like protein 3 isoform 2 ZNF638 0.021 zinc finger protein 638 ZNF638 0.021 zinc finger protein 638 SNRPA 0.019 small nuclear ribonucleoprotein polypeptide A ELAVL4 0.018 ELAV-like 4 isoform 5 ELAVL4 0.018 ELAV-like 4 isoform 4 ELAVL4 0.018 ELAV-like 4 isoform 3 ELAVL4 0.018 ELAV-like 4 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.