PTBP1 24802

Name: PTBP1	Sequence: fasta or formatted (197aa)		NCBI GI: 28558998
Description: polypyrimidine tract-binding protein 1 isoform d		Referenced in: hnRNP RNases and RNA Stability Capping and Splicing
Other entries for this name: alt prot [550aa] polypyrimidine tract-binding protein 1 isoform b alt prot [531aa] polypyrimidine tract-binding protein 1 isoform c alt prot [557aa] polypyrimidine tract-binding protein 1 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.6 9 1 C cysteine 0.0 0 0 D aspartate 5.1 10 1 E glutamate 4.1 8 2 F phenylalanine 5.6 11 2 G glycine 8.1 16 2 H histidine 5.1 10 2 I isoleucine 5.6 11 1 K lysine 8.6 17 2 L leucine 10.2 20 1 M methionine 2.5 5 1 N asparagine 6.1 12 1 P proline 5.1 10 2 Q glutamine 6.6 13 1 R arginine 3.6 7 1 S serine 7.6 15 2 T threonine 3.0 6 1 V valine 7.6 15 2 W tryptophan 0.0 0 0 Y tyrosine 1.0 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 polypyrimidine tract-binding protein 1 isoform d [Ho... PTBP1 0.933 polypyrimidine tract-binding protein 1 isoform c [Ho... PTBP1 0.933 polypyrimidine tract-binding protein 1 isoform b [Ho... PTBP1 0.933 polypyrimidine tract-binding protein 1 isoform a [Hom... PTBP2 0.774 polypyrimidine tract binding protein 2 ROD1 0.771 ROD1 regulator of differentiation 1 HNRPLL 0.135 heterogeneous nuclear ribonucleoprotein L-like isof... HNRPLL 0.135 heterogeneous nuclear ribonucleoprotein L-like isofo... HNRNPL 0.121 heterogeneous nuclear ribonucleoprotein L isoform b ... HNRNPL 0.121 heterogeneous nuclear ribonucleoprotein L isoform a ... NONO 0.065 non-POU domain containing, octamer-binding isoform ... NONO 0.065 non-POU domain containing, octamer-binding isoform ... NONO 0.065 non-POU domain containing, octamer-binding isoform 1... RBM4B 0.059 RNA binding motif protein 4B RBM4 0.057 RNA binding motif protein 4 SNRPB2 0.057 small nuclear ribonucleoprotein polypeptide B'' [Hom... SNRPB2 0.057 small nuclear ribonucleoprotein polypeptide B'' [Homo... MATR3 0.040 matrin 3 MATR3 0.040 matrin 3 ELAVL1 0.038 ELAV-like 1 ELAVL2 0.035 ELAV (embryonic lethal, abnormal vision, Drosophila... RBM7 0.035 RNA binding motif protein 7 PABPC5 0.032 poly(A) binding protein, cytoplasmic 5 RBM19 0.027 RNA binding motif protein 19 RBM19 0.027 RNA binding motif protein 19 RBM19 0.027 RNA binding motif protein 19 PSPC1 0.027 paraspeckle protein 1 PABPC1L 0.027 poly(A)-binding protein, cytoplasmic 1-like A1CF 0.024 apobec-1 complementation factor isoform 3 A1CF 0.024 apobec-1 complementation factor isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.