Guide to the Human Genome
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Name: MAGED1 Sequence: fasta or formatted (834aa) NCBI GI: 52632381
Description:

melanoma antigen family D, 1 isoform a

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt prot [778aa] melanoma antigen family D, 1 isoform b
alt prot [778aa] melanoma antigen family D, 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         99           4
 C cysteine            0.8          7           1
 D aspartate           5.3         44           2
 E glutamate           4.8         40           2
 F phenylalanine       3.1         26           2
 G glycine             5.4         45           2
 H histidine           0.7          6           1
 I isoleucine          4.0         33           2
 K lysine              4.2         35           2
 L leucine             7.2         60           3
 M methionine          1.7         14           1
 N asparagine          5.6         47           2
 P proline            12.5        104           2
 Q glutamine           6.1         51           1
 R arginine            4.9         41           2
 S serine              5.5         46           2
 T threonine           6.2         52           2
 V valine              4.2         35           2
 W tryptophan          4.0         33           1
 Y tyrosine            1.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family D, 1 isoform a 
MAGED1                0.911   melanoma antigen family D, 1 isoform b 
MAGED1                0.911   melanoma antigen family D, 1 isoform b 
MAGED4B               0.247   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.247   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.247   melanoma antigen family D, 4B isoform 1 
MAGED4                0.247   melanoma antigen family D, 4 
TRO                   0.219   trophinin isoform 5 
MAGED2                0.200   melanoma antigen family D, 2 
MAGED2                0.200   melanoma antigen family D, 2 
MAGED2                0.200   melanoma antigen family D, 2 
TRO                   0.184   trophinin isoform 2 
TRO                   0.184   trophinin isoform 2 
MAGEL2                0.108   MAGE-like protein 2 
NDNL2                 0.103   necdin-like 2 
MAGEF1                0.101   melanoma antigen family F, 1 
MAGEE1                0.095   melanoma antigen family E, 1 
MAGEB10               0.086   melanoma antigen family B, 10 
MAGEB3                0.084   melanoma antigen family B, 3 
NDN                   0.083   necdin 
MAGEA10               0.083   melanoma antigen family A, 10 
MAGEA10               0.083   melanoma antigen family A, 10 
MAGEB18               0.083   melanoma antigen family B, 18 
MAGEB16               0.082   melanoma antigen family B, 16 
MAGEA11               0.082   melanoma antigen family A, 11 isoform b 
MAGEA11               0.082   melanoma antigen family A, 11 isoform a 
MAGEB4                0.082   melanoma antigen family B, 4 
MAGEA8                0.082   melanoma antigen family A, 8 
MAGEB17               0.080   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.080   PREDICTED: melanoma antigen family B, 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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