Guide to the Human Genome
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Name: MAGED1 Sequence: fasta or formatted (778aa) NCBI GI: 52632377
Description:

melanoma antigen family D, 1 isoform b

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt mRNA [778aa] melanoma antigen family D, 1 isoform b
alt prot [834aa] melanoma antigen family D, 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         92           4
 C cysteine            0.3          2           1
 D aspartate           5.3         41           2
 E glutamate           5.1         40           2
 F phenylalanine       3.2         25           2
 G glycine             5.7         44           2
 H histidine           0.6          5           1
 I isoleucine          4.2         33           2
 K lysine              4.5         35           2
 L leucine             6.8         53           3
 M methionine          1.8         14           1
 N asparagine          5.9         46           2
 P proline            11.6         90           2
 Q glutamine           6.3         49           1
 R arginine            5.0         39           2
 S serine              5.3         41           2
 T threonine           6.3         49           2
 V valine              4.2         33           2
 W tryptophan          4.2         33           1
 Y tyrosine            1.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family D, 1 isoform b 
MAGED1                1.000   melanoma antigen family D, 1 isoform b 
MAGED1                0.981   melanoma antigen family D, 1 isoform a 
MAGED4B               0.266   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.266   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.266   melanoma antigen family D, 4B isoform 1 
MAGED4                0.266   melanoma antigen family D, 4 
TRO                   0.236   trophinin isoform 5 
MAGED2                0.215   melanoma antigen family D, 2 
MAGED2                0.215   melanoma antigen family D, 2 
MAGED2                0.215   melanoma antigen family D, 2 
TRO                   0.198   trophinin isoform 2 
TRO                   0.198   trophinin isoform 2 
MAGEL2                0.116   MAGE-like protein 2 
NDNL2                 0.111   necdin-like 2 
MAGEF1                0.109   melanoma antigen family F, 1 
MAGEE1                0.101   melanoma antigen family E, 1 
MAGEB10               0.093   melanoma antigen family B, 10 
MAGEB3                0.091   melanoma antigen family B, 3 
NDN                   0.090   necdin 
MAGEA10               0.089   melanoma antigen family A, 10 
MAGEA10               0.089   melanoma antigen family A, 10 
MAGEB18               0.089   melanoma antigen family B, 18 
MAGEB16               0.088   melanoma antigen family B, 16 
MAGEA11               0.088   melanoma antigen family A, 11 isoform b 
MAGEA11               0.088   melanoma antigen family A, 11 isoform a 
MAGEB4                0.088   melanoma antigen family B, 4 
MAGEA8                0.088   melanoma antigen family A, 8 
MAGEB17               0.087   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.087   PREDICTED: melanoma antigen family B, 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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