Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NGLY1 Sequence: fasta or formatted (612aa) NCBI GI: 223941803
Description:

N-glycanase 1 isoform 3

Referenced in:

Proteasome

Other entries for this name:
alt prot [654aa] N-glycanase 1 isoform 1
alt prot [636aa] N-glycanase 1 isoform 2
alt prot [558aa] N-glycanase 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         32           2
 C cysteine            3.1         19           2
 D aspartate           5.1         31           2
 E glutamate           8.7         53           2
 F phenylalanine       3.8         23           2
 G glycine             5.4         33           2
 H histidine           2.5         15           1
 I isoleucine          5.1         31           3
 K lysine              6.5         40           2
 L leucine             9.3         57           3
 M methionine          0.8          5           1
 N asparagine          4.6         28           3
 P proline             3.3         20           2
 Q glutamine           4.7         29           2
 R arginine            7.0         43           2
 S serine              9.0         55           2
 T threonine           4.6         28           2
 V valine              6.4         39           2
 W tryptophan          2.6         16           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-glycanase 1 isoform 3 
NGLY1                 0.999   N-glycanase 1 isoform 1 
NGLY1                 0.898   N-glycanase 1 isoform 2 
NGLY1                 0.811   N-glycanase 1 isoform 4 
SSX2IP                0.011   synovial sarcoma, X breakpoint 2 interacting protein...
WDR78                 0.009   WD repeat domain 78 isoform 1 
WDR78                 0.009   WD repeat domain 78 isoform 2 
KDM5A                 0.008   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.008   retinoblastoma binding protein 2 isoform 2 
CCNA2                 0.008   cyclin A 
APC                   0.007   adenomatous polyposis coli 
APC                   0.007   adenomatous polyposis coli 
APC                   0.007   adenomatous polyposis coli 
REM1                  0.007   RAS-like GTP-binding protein REM 
EP300                 0.007   E1A binding protein p300 
XPC                   0.007   xeroderma pigmentosum, complementation group C isof...
XPC                   0.007   xeroderma pigmentosum, complementation group C isof...
BRD3                  0.007   bromodomain containing protein 3 
TSC22D1               0.006   TSC22 domain family, member 1 isoform 2 
RPRD2                 0.006   Regulation of nuclear pre-mRNA domain containing 2 ...
NUP214                0.005   nucleoporin 214kDa 
NHSL1                 0.005   NHS-like 1 
UBXN6                 0.005   UBX domain protein 6 
SPEN                  0.004   spen homolog, transcriptional regulator 
LOC100133923          0.004   PREDICTED: similar to UPF0634 protein C 
TSC22D1               0.004   TSC22 domain family, member 1 isoform 1 
ANKRD36B              0.004   ankyrin repeat domain 36B 
UBQLN2                0.004   ubiquilin 2 
OPTN                  0.004   optineurin 
OPTN                  0.004   optineurin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press