Search of human proteins with 5174689

Search of human proteins with 5174689

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5174689 small nuclear RNA activating complex, polypeptide 5
[Homo sapiens]
         (98 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5174689 small nuclear RNA activating complex, polypeptide 5 [...   188   7e-49
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    37   0.003
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]          34   0.022
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H...    34   0.029
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is...    33   0.037
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is...    33   0.037
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   0.083
gi|164419758 bromodomain containing 2 [Homo sapiens]                   32   0.083
gi|4826806 bromodomain containing 2 [Homo sapiens]                     32   0.083
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]                       32   0.083
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      32   0.083
gi|17975763 myelin transcription factor 1 [Homo sapiens]               32   0.11 
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo...    32   0.14 
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo...    32   0.14 
gi|158631177 homeodomain leucine zipper protein [Homo sapiens]         32   0.14 
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ...    31   0.19 
gi|62241003 cardiomyopathy associated 5 [Homo sapiens]                 31   0.19 
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]             31   0.24 
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]             31   0.24 
gi|38044112 restin isoform b [Homo sapiens]                            31   0.24 
gi|4506751 restin isoform a [Homo sapiens]                             31   0.24 
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    31   0.24 
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    31   0.24 
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap...    31   0.24 
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap...    31   0.24 
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap...    31   0.24 
gi|115511012 coiled-coil domain containing 136 [Homo sapiens]          31   0.24 
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa...    30   0.32 
gi|4885583 Rho-associated, coiled-coil containing protein kinase...    30   0.32 
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho...    30   0.32 

>gi|5174689 small nuclear RNA activating complex, polypeptide 5
          [Homo sapiens]
          Length = 98

 Score =  188 bits (478), Expect = 7e-49
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD 60
          MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
Sbjct: 1  MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD 60

Query: 61 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
          MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
Sbjct: 61 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 13   ETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASIN 72
            ETLL   A++ ++L R+K+E   L     S   ++   S  V +  H +  +V  +A++ 
Sbjct: 1715 ETLLSSNASMKEELERVKMEYETLSKKFQSLMSEKDSLSEEVQDLKHQIEGNVSKQANL- 1773

Query: 73   QTTLELSTKSHVTEEEEEE---EEEESDS 98
            + T +   +++VTEE  +    E EE DS
Sbjct: 1774 EATEKHDNQTNVTEEGTQSIPGETEEQDS 1802



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 6   QELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHV 65
           Q + ++++ +  +  ++ +++ +L  E+ +L   I + +  E L+  +  E++    V  
Sbjct: 894 QTIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLK--EQLNLLSRAEEAKKEQVEE 951

Query: 66  DNEAS--INQTTLELSTKSHVTEEEEEEE 92
           DNE S  + Q   E+S    +++EE + E
Sbjct: 952 DNEVSSGLKQNYDEMSPAGQISKEELQHE 980


>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
          Length = 291

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 60  DMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESD 97
           DML HV+  A   +  L+ +      EE+EEEEEEE D
Sbjct: 246 DMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPD 283


>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
           sapiens]
          Length = 707

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 11  EEETLLRLKAALHDQLNRLKVEELALQSM----ISSRRGDEMLSSHTVPEQSHDMLVHVD 66
           +EE + R+      Q  R + EE   ++     +  R G +  S     E++++  + VD
Sbjct: 29  DEEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQNDSQQGQLEENNNRFISVD 88

Query: 67  NEASINQTTLELSTKSHVTEEEEEEEEEESD 97
            ++S NQ   E   +    ++EE+EEEEE D
Sbjct: 89  EDSSGNQEEQEEDEEHAGEQDEEDEEEEEMD 119


>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
           isoform b [Homo sapiens]
          Length = 1176

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 58  SHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESD 97
           S D  V  D+++ +   T +LS +    EEEEEEEEEE +
Sbjct: 278 SVDERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEE 317


>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
           isoform a [Homo sapiens]
          Length = 1210

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 58  SHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESD 97
           S D  V  D+++ +   T +LS +    EEEEEEEEEE +
Sbjct: 278 SVDERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEE 317


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 46  DEMLSSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESD 97
           DE  S    PEQ +D      +  S +  T     +    EEEEEEEE+E +
Sbjct: 235 DEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEE 286



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 73   QTTLELSTKSHVTEEEEEEEEEESD 97
            + T E   +    EEEEEEEEEE +
Sbjct: 1010 EATEEAGVRGGAEEEEEEEEEEEEE 1034


>gi|164419758 bromodomain containing 2 [Homo sapiens]
          Length = 801

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 62  LVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
           L    +E+S  +++ E S++    E+EE+EEEEES+S
Sbjct: 473 LAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESES 509


>gi|4826806 bromodomain containing 2 [Homo sapiens]
          Length = 801

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 62  LVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
           L    +E+S  +++ E S++    E+EE+EEEEES+S
Sbjct: 473 LAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESES 509


>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
          Length = 1049

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 50  SSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEE 95
           SSH+VP  S    +   +++S   +  + S      EEEEEEEEEE
Sbjct: 350 SSHSVPSMS----ISASSQSSSVNSLADASDNEEEEEEEEEEEEEE 391


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 50  SSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEE 95
           SSH+VP  S    +   +++S   +  + S      EEEEEEEEEE
Sbjct: 350 SSHSVPSMS----ISASSQSSSVNSLADASDNEEEEEEEEEEEEEE 391


>gi|17975763 myelin transcription factor 1 [Homo sapiens]
          Length = 1121

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 56  EQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESD 97
           E+S D+      +A+  +++ +    SH  E+EEEEEEEE +
Sbjct: 230 ERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEE 271



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 32  EELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEE 91
           EE + Q  I S   ++        E+  D     + E    +   E   +    EEEEEE
Sbjct: 246 EESSKQKGILSHEEEDEEEEEEEEEEEED-----EEEEEEEEEEEEEEEEEEEEEEEEEE 300

Query: 92  EEEESDS 98
           EEEE ++
Sbjct: 301 EEEEEEA 307


>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
            sapiens]
          Length = 1236

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 49   LSSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEE 95
            L    +PE+ H +LV++  +A          +++ V EEEEEEEEEE
Sbjct: 958  LVKRLLPEEYHRVLVNI-RKAEARAKRHRALSQAAVEEEEEEEEEEE 1003


>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
            sapiens]
          Length = 1297

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 49   LSSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEE 95
            L    +PE+ H +LV++  +A          +++ V EEEEEEEEEE
Sbjct: 1019 LVKRLLPEEYHRVLVNI-RKAEARAKRHRALSQAAVEEEEEEEEEEE 1064


>gi|158631177 homeodomain leucine zipper protein [Homo sapiens]
          Length = 550

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 21  ALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASINQTTLELST 80
           A H QL    + +L+  S +S+++  +   S     Q  +++V +D E    +  L    
Sbjct: 471 AAHQQLRETDIPQLSQASRLSTQQVLDWFDSRL--PQPAEVVVCLDEEEEEEEEELPED- 527

Query: 81  KSHVTEEEEEEEEEESD 97
                +EEEEEEEEE D
Sbjct: 528 -----DEEEEEEEEEDD 539


>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
            sapiens]
          Length = 2923

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 56   EQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
            +Q HD     D++ S+          +H ++ EEEEEEEE ++
Sbjct: 2711 DQQHDPDTDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEEEA 2753


>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
          Length = 4069

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 10  KEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEA 69
           KEEE +L L AA   +   L  EE   + + S   G   +S ++VP+  +  L   + E 
Sbjct: 558 KEEELILPLLAASSPEHVALSEEER--EEIASVSTGSAFVSEYSVPQDLNHELQEQEGEP 615

Query: 70  SINQTTLELSTKSHVTEEEEEEEEEES 96
                   ++  + ++EEE EE E  S
Sbjct: 616 VPPSNVEAIAEHAVLSEEENEEFEAYS 642


>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
          Length = 1123

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 23  HDQ-LNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASINQTTLEL--- 78
           H Q L + K ++L L  +++ + G+      T PE++ + L     E  + +  L +   
Sbjct: 518 HQQFLEKQKQQQLQLGKILT-KTGELPRQPTTHPEETEEELTE-QQEVLLGEGALTMPRE 575

Query: 79  -STKSHVTEEEEEEEEEESD 97
            ST+S  T+E+ EEE+EE D
Sbjct: 576 GSTESESTQEDLEEEDEEDD 595


>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
          Length = 1122

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 23  HDQ-LNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASINQTTLEL--- 78
           H Q L + K ++L L  +++ + G+      T PE++ + L     E  + +  L +   
Sbjct: 517 HQQFLEKQKQQQLQLGKILT-KTGELPRQPTTHPEETEEELTE-QQEVLLGEGALTMPRE 574

Query: 79  -STKSHVTEEEEEEEEEESD 97
            ST+S  T+E+ EEE+EE D
Sbjct: 575 GSTESESTQEDLEEEDEEDD 594


>gi|38044112 restin isoform b [Homo sapiens]
          Length = 1392

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 4    RLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLV 63
            +++E RKE ETL +  A    QL+ L+ E + L   +   R DE+ S   + E+      
Sbjct: 1104 KMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSR-DEVTSHQKLEEE------ 1156

Query: 64   HVDNEASINQTTLELSTKSHVTEEEEEEEE 93
                 + +N   LE+  +     ++ +EE+
Sbjct: 1157 ----RSVLNNQLLEMKKRESKFIKDADEEK 1182


>gi|4506751 restin isoform a [Homo sapiens]
          Length = 1427

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 4    RLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLV 63
            +++E RKE ETL +  A    QL+ L+ E + L   +   R DE+ S   + E+      
Sbjct: 1139 KMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSR-DEVTSHQKLEEE------ 1191

Query: 64   HVDNEASINQTTLELSTKSHVTEEEEEEEE 93
                 + +N   LE+  +     ++ +EE+
Sbjct: 1192 ----RSVLNNQLLEMKKRESKFIKDADEEK 1217


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 18/81 (22%)

Query: 4   RLQELRKEEETLLRLKAALHD-----QLNRLKVEELALQSMISSRRGDEMLSSHTVPEQS 58
           +L EL KE    L+LKA LHD      ++R K+EEL           +E ++     +QS
Sbjct: 376 KLHELEKEN---LQLKAKLHDMEMERDMDRKKIEELM----------EENMTLEMAQKQS 422

Query: 59  HDMLVHVDNEASINQTTLELS 79
            D  +H+  E      T ELS
Sbjct: 423 MDESLHLGWELEQISRTSELS 443


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
           sapiens]
          Length = 1870

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 18/81 (22%)

Query: 4   RLQELRKEEETLLRLKAALHD-----QLNRLKVEELALQSMISSRRGDEMLSSHTVPEQS 58
           +L EL KE    L+LKA LHD      ++R K+EEL           +E ++     +QS
Sbjct: 376 KLHELEKEN---LQLKAKLHDMEMERDMDRKKIEELM----------EENMTLEMAQKQS 422

Query: 59  HDMLVHVDNEASINQTTLELS 79
            D  +H+  E      T ELS
Sbjct: 423 MDESLHLGWELEQISRTSELS 443


>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
           sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 10  KEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEA 69
           ++  T  R+  +L  Q + L  E   L++++ S + + +   H V     D L+ + +++
Sbjct: 202 RDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQV--NLRDELLQLYSDS 259

Query: 70  SINQTTLELSTKSHVTEEEEEEEEEESD 97
                  E   +    EEE+EEEE E D
Sbjct: 260 DEEDEDEEEEEEEKEAEEEQEEEEAEED 287


>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
           sapiens]
          Length = 602

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 10  KEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEA 69
           ++  T  R+  +L  Q + L  E   L++++ S + + +   H V     D L+ + +++
Sbjct: 210 RDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQV--NLRDELLQLYSDS 267

Query: 70  SINQTTLELSTKSHVTEEEEEEEEEESD 97
                  E   +    EEE+EEEE E D
Sbjct: 268 DEEDEDEEEEEEEKEAEEEQEEEEAEED 295


>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
           sapiens]
          Length = 619

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 10  KEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEA 69
           ++  T  R+  +L  Q + L  E   L++++ S + + +   H V     D L+ + +++
Sbjct: 202 RDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQV--NLRDELLQLYSDS 259

Query: 70  SINQTTLELSTKSHVTEEEEEEEEEESD 97
                  E   +    EEE+EEEE E D
Sbjct: 260 DEEDEDEEEEEEEKEAEEEQEEEEAEED 287


>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
          Length = 1154

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 20/102 (19%)

Query: 7    ELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRR----------GDEMLSSHTVPE 56
            E RK  E +L  KA+   +L+ L  EE   + M   ++          GDE+++    PE
Sbjct: 1012 ETRKSLEVVLYYKASQR-KLDGLAKEEEKKEEMEEEKKQVKEEAKEQCGDELVAEPADPE 1070

Query: 57   QSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
            ++         +++ +Q   E   +    EE+ EEEE+++DS
Sbjct: 1071 EA---------KSTEDQEENEEDKEEEEKEEDSEEEEDDADS 1103


>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 750

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/91 (19%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 6   QELRKEEETLLRLKAALHDQLNRLK-VEELALQSMISSRRGDEMLSSHTVPEQSHDMLVH 64
           +++R++EE + R +  + ++  +++  EE+  +     RR +EM+       +  + ++ 
Sbjct: 328 EKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMW 387

Query: 65  VDNEASINQTTLELSTKSHVTEEEEEEEEEE 95
            + E  I +   ++  +  + E+EE+ +EEE
Sbjct: 388 -EKEEKIRELEEKMHEQEKIREQEEKRQEEE 417


>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
           [Homo sapiens]
          Length = 1354

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 15/110 (13%)

Query: 2   LSRLQELRKEEETL-----LRLKAALHDQLNRLKVE----ELALQSMISSRRGDEMLS-- 50
           L ++QEL+ E+ETL     L    A  +QL R  +E    EL  +S  ++ R  + ++  
Sbjct: 875 LKKIQELQNEKETLATQLDLAETKAESEQLARGLLEEQYFELTQESKKAASRNRQEITDK 934

Query: 51  SHTVP--EQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS 98
            HTV   E+++ ML   D E  + +   EL+ K    EEE + E+EE  S
Sbjct: 935 DHTVSRLEEANSMLTK-DIEI-LRRENEELTEKMKKAEEEYKLEKEEEIS 982


>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
            sapiens]
          Length = 1972

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 3    SRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDML 62
            +++QEL+ +     R +A L+D++++L+ E  ++  M++   G  +  +  V   S  + 
Sbjct: 1259 AQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQL- 1317

Query: 63   VHVDNEASINQTT---LELSTKSHVTEEEEEEEEEESD 97
               D +  + + T   L +STK    EEE    +++ D
Sbjct: 1318 --QDTQELLQEETRQKLNVSTKLRQLEEERNSLQDQLD 1353


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.302    0.119    0.292 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,459,945
Number of Sequences: 37866
Number of extensions: 140679
Number of successful extensions: 4585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 2800
Number of HSP's gapped (non-prelim): 1104
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.