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Search of human proteins with 133925791
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|133925791 zinc finger, CCCH-type with G patch domain isoform
c [Homo sapiens]
(511 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|133925795 zinc finger, CCCH-type with G patch domain isoform ... 1009 0.0
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ... 1009 0.0
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ... 998 0.0
gi|56788356 tuftelin interacting protein 11 [Homo sapiens] 55 2e-07
gi|8393259 tuftelin interacting protein 11 [Homo sapiens] 55 2e-07
gi|5032113 survival motor neuron domain containing 1 [Homo sapiens] 47 3e-05
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens] 41 0.002
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 41 0.002
gi|8922313 G patch domain containing 2 [Homo sapiens] 40 0.007
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap... 39 0.011
gi|50962882 G patch domain containing 8 [Homo sapiens] 39 0.011
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 38 0.019
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 38 0.019
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 38 0.019
gi|33589824 cell growth regulator with EF-hand domain 1 [Homo sa... 38 0.019
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 38 0.025
gi|154090997 coiled-coil domain containing 13 [Homo sapiens] 38 0.025
gi|13027602 DDRGK domain containing 1 [Homo sapiens] 37 0.033
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 37 0.043
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 37 0.043
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens] 37 0.043
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 37 0.043
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 37 0.043
gi|93204881 Rab interacting lysosomal protein [Homo sapiens] 37 0.056
gi|30089948 protein phosphatase 1E [Homo sapiens] 36 0.073
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 36 0.095
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 36 0.095
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 36 0.095
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 36 0.095
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens] 36 0.095
>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 1009 bits (2610), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
Query: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
Query: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
Sbjct: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
Query: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
Sbjct: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
Query: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
Sbjct: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
Query: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 1009 bits (2610), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
Query: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
Query: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
Sbjct: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
Query: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
Sbjct: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
Query: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
Sbjct: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
Query: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
[Homo sapiens]
Length = 531
Score = 998 bits (2579), Expect = 0.0
Identities = 511/531 (96%), Positives = 511/531 (96%), Gaps = 20/531 (3%)
Query: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
Query: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYAR---------- 290
VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYAR
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSA 300
Query: 291 ----------VVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV 340
VVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV
Sbjct: 301 QSSALCPSLAVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV 360
Query: 341 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE 400
EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE
Sbjct: 361 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE 420
Query: 401 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL 460
KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL
Sbjct: 421 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL 480
Query: 461 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 531
>gi|56788356 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 306 FAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHA 345
F WE HT+GIG +LL KMGY G+GLG++A+G + PI A
Sbjct: 142 FGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEA 181
>gi|8393259 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 306 FAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHA 345
F WE HT+GIG +LL KMGY G+GLG++A+G + PI A
Sbjct: 142 FGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEA 181
>gi|5032113 survival motor neuron domain containing 1 [Homo
sapiens]
Length = 238
Score = 47.4 bits (111), Expect = 3e-05
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 4 ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLL 63
E L L +Y+AQLQQVE AL + E DL +L+ DL+E+IELT+ L+S + S L
Sbjct: 3 EDLAKQLASYKAQLQQVEAALSG---NGENEDLLKLKKDLQEVIELTK-DLLSTQPSETL 58
Query: 64 AALD 67
A+ D
Sbjct: 59 ASSD 62
>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
Length = 930
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 300 GTCSSAFAGWEVHTR------GIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKS 353
G S+A +E TR IGSR+L MG++ G GLGR +G V PI A RG
Sbjct: 839 GGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG 898
Query: 354 L 354
L
Sbjct: 899 L 899
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 300 GTCSSAFAGWEVHTR------GIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKS 353
G S+A +E TR IGSR+L MG++ G GLGR +G V PI A RG
Sbjct: 761 GGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG 820
Query: 354 L 354
L
Sbjct: 821 L 821
>gi|8922313 G patch domain containing 2 [Homo sapiens]
Length = 528
Score = 39.7 bits (91), Expect = 0.007
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 316 IGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSL 354
IG+R+L MG+ G GLGR +G EPI A+ P+G L
Sbjct: 470 IGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGL 508
>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
Length = 835
Score = 38.9 bits (89), Expect = 0.011
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 271 TEATESDSDSDGTGDSS--YARVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEF 328
T + SDS+++G SS + +D++ GT SS ++ + + +L+ KMG+
Sbjct: 48 TSLSGSDSETEGKQHSSDSFDDAFKADSLVEGT-SSRYSMYN----SVSQKLMAKMGFRE 102
Query: 329 GKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRC 378
G+GLG++++GR + + A + L + ++ V +P C
Sbjct: 103 GEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWRDEPEPSAC 152
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 38.9 bits (89), Expect = 0.011
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 311 VHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVV 347
+ + IG RLL K G++ G+GLG+ +GR +PI VV
Sbjct: 38 IESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVV 74
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 38.1 bits (87), Expect = 0.019
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 30 SSEQADLRQLQ-GDLKELIE---LTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREA 85
SS ++++L+ +LKE ++ L++ L + L AALD+E G +
Sbjct: 2 SSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRP---------- 51
Query: 86 ITEAVEAPAAARGSGSETVPKAEAG--PESAAGGQEEEEGEDEEE 128
A+E + G ++ ++ AG E+AAGG EEEE E+EEE
Sbjct: 52 ---AMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEE 93
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 38.1 bits (87), Expect = 0.019
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 30 SSEQADLRQLQ-GDLKELIE---LTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREA 85
SS ++++L+ +LKE ++ L++ L + L AALD+E G +
Sbjct: 2 SSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRP---------- 51
Query: 86 ITEAVEAPAAARGSGSETVPKAEAG--PESAAGGQEEEEGEDEEE 128
A+E + G ++ ++ AG E+AAGG EEEE E+EEE
Sbjct: 52 ---AMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEE 93
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 38.1 bits (87), Expect = 0.019
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 348 LPRGKSLD-QCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQA 406
L RGK+L Q +E L++Q + + A A R+ D L E+ + +A
Sbjct: 1350 LSRGKALAAQSLEELRRQLE---------EESKAKSALAHAVQALRHDCDLLREQHEEEA 1400
Query: 407 PGALE-------AGAAPAGRRSKDMYHAS--------KSAKRALSLRLFQTEEKIERTQR 451
E A A A RSK Y A + AK+ L+LRL + EE +E
Sbjct: 1401 EAQAELQRLLSKANAEVAQWRSK--YEADAIQRTEELEEAKKKLALRLQEAEEGVEAANA 1458
Query: 452 DIRSIQEALAR----------NAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRK 501
S+++A R R + A+A L +K +R L + R QE +Q+E
Sbjct: 1459 KCSSLEKAKLRLQTESEDVTLELERATSAAAALDKKQRHLERALEERRRQEEEMQRELEA 1518
Query: 502 ADTHKK 507
A +
Sbjct: 1519 AQRESR 1524
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 5 SLESALQTYRAQLQQV-----ELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRK 59
S E +TY QL + EL S+++ L+ G+L L+E E + + +
Sbjct: 1293 SAEKLCRTYEDQLSEAKIKVEELQRQLADASTQRGRLQTESGELSRLLEEKECLISQLSR 1352
Query: 60 SSLLAALDEERPGRQEDAEYQAFREAITEAVEA 92
LAA E RQ + E +A + A+ AV+A
Sbjct: 1353 GKALAAQSLEELRRQLEEESKA-KSALAHAVQA 1384
Score = 30.8 bits (68), Expect = 3.1
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 420 RSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQ-EKL 478
+ K + ++ AKR L L T+E + +D + ++E L + S S +++ E+L
Sbjct: 1089 QEKKLRMDTERAKRKLEGDLKLTQESVADAAQDKQQLEEKLKKKDSELSQLSLRVEDEQL 1148
Query: 479 AGAQRQ--LGQLRAQEAGLQQE 498
GAQ Q + +L+A+ L++E
Sbjct: 1149 LGAQMQKKIKELQARAEELEEE 1170
>gi|33589824 cell growth regulator with EF-hand domain 1 [Homo
sapiens]
Length = 301
Score = 38.1 bits (87), Expect = 0.019
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 42 DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
+ K +E SL V++ A D + PG + +AE QA EA A G
Sbjct: 190 EAKGQVEARRESLDPVQEPGGQAEADGDVPGPRGEAEGQA---------EAKGDAPGPRG 240
Query: 102 ETVPKAEA-----GPESAAGGQEE--EEGEDEEELSG 131
E +AEA GP AGGQ E E GE+ +EL G
Sbjct: 241 EAGGQAEAEGDAPGPRGEAGGQAEARENGEEAKELPG 277
Score = 35.4 bits (80), Expect = 0.12
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 56 SVRKSSLLAALDEERPGRQEDAEYQ--AFREAITEAVEAPAAARGSGSETVPKAEA---- 109
S+ S L +E PG +E+A+ Q A RE++ E A G P+ EA
Sbjct: 170 SLLAKSPLRQETQEAPGPREEAKGQVEARRESLDPVQEPGGQAEADGDVPGPRGEAEGQA 229
Query: 110 -------GPESAAGGQEEEEGE 124
GP AGGQ E EG+
Sbjct: 230 EAKGDAPGPRGEAGGQAEAEGD 251
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 37.7 bits (86), Expect = 0.025
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 313 TRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQT 365
T G+G+ L+ KMG+ G+GLG++ EG EPI K L E QK++
Sbjct: 2305 TGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRS 2357
>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
Length = 715
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 406 APGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEK-------IERTQRDIRSIQE 458
A GA +AGA P + D +AL RL T K I+ ++++R Q+
Sbjct: 181 AKGATDAGAKPPRAQMGDRALLETPEVKALQDRLVATNLKMSDLRNQIQSVKQELRMAQK 240
Query: 459 ALARNAGR----------------HSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQ 499
LAR G + LQ K+ ++QLGQ R+Q AG ++
Sbjct: 241 VLAREVGEDINVQQLLSSPGTWRGRAQQILVLQSKVQELEKQLGQARSQSAGTASDE 297
>gi|13027602 DDRGK domain containing 1 [Homo sapiens]
Length = 314
Score = 37.4 bits (85), Expect = 0.033
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 26/171 (15%)
Query: 350 RGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGA 409
RG++ E L + G +P R GGRP R L +LQ Q
Sbjct: 25 RGRAASAGQEPLHNEELAGAGRVAQPGPLEPEEPRAGGRPRRRR---DLGSRLQAQ---- 77
Query: 410 LEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERT----------QRDIRSIQEA 459
RR++ + A ++ L Q EE +E+ + +R ++E
Sbjct: 78 ---------RRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAKKLRKLEEK 128
Query: 460 LARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTE 510
AR A R + + + + K +QR+ + +E +E++K + +K E
Sbjct: 129 QARKAQREAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKARE 179
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 37.0 bits (84), Expect = 0.043
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 7 ESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAAL 66
E+ ++ ++++++ A+ L S + + ++ + +E E E V+ +KS + A
Sbjct: 459 ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEE-VAAKKSPVKATA 517
Query: 67 DE--ERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGE 124
E E G +E+ E Q E E ++ A G GSE E E G E+EEGE
Sbjct: 518 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEG-GSEK----EGSSEKEEG--EQEEGE 570
Query: 125 DEEELSGTKVSA 136
E E G + A
Sbjct: 571 TEAEAEGEEAEA 582
Score = 35.0 bits (79), Expect = 0.16
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 43 LKELIELTEASLVSVRKSSLLAALDEERPG--RQEDAEYQAFREAITEAVEAPAAARGSG 100
++E+IE T+ L A+ EE ++E E +E EA E AA+ S
Sbjct: 453 VEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSP 512
Query: 101 SE-TVP--KAEAGPESAAGGQEEEEGEDE 126
+ T P K E G + GQEEEE EDE
Sbjct: 513 VKATAPEVKEEEGEKEEEEGQEEEEEEDE 541
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 37.0 bits (84), Expect = 0.043
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 7 ESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAAL 66
E+ ++ ++++++ A+ L S + + ++ + +E E E V+ +KS + A
Sbjct: 83 ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEE-VAAKKSPVKATA 141
Query: 67 DE--ERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGE 124
E E G +E+ E Q E E ++ A G GSE E E G E+EEGE
Sbjct: 142 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEG-GSEK----EGSSEKEEG--EQEEGE 194
Query: 125 DEEELSGTKVSA 136
E E G + A
Sbjct: 195 TEAEAEGEEAEA 206
Score = 35.0 bits (79), Expect = 0.16
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 43 LKELIELTEASLVSVRKSSLLAALDEERPG--RQEDAEYQAFREAITEAVEAPAAARGSG 100
++E+IE T+ L A+ EE ++E E +E EA E AA+ S
Sbjct: 77 VEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSP 136
Query: 101 SE-TVP--KAEAGPESAAGGQEEEEGEDE 126
+ T P K E G + GQEEEE EDE
Sbjct: 137 VKATAPEVKEEEGEKEEEEGQEEEEEEDE 165
>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
Length = 759
Score = 37.0 bits (84), Expect = 0.043
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 50 TEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEA 109
T S+ + + + A E G+ E E EA EAPA R S AEA
Sbjct: 200 TALSVANCLGAQTVQAPAEPAAGKAEQGETSG-----REAPEAPAVGREDASAEDSCAEA 254
Query: 110 GPESAAGGQEEEEGEDEEELSGT-KVSAPYYSSWGTLEYHNAMVVGTEEAEDGS 162
AA G + E+EEE T +V + G LE ++ T+ A+ GS
Sbjct: 255 AASGAADGATAPKTEEEEEEEETAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGS 308
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 37.0 bits (84), Expect = 0.043
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 42 DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
D+ +L EL+ S + AA P +E+ E + EA EAV A GSG
Sbjct: 7 DMADLEELSRLSPLPPGSPGS-AARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGG 65
Query: 102 ------------ETVPKAEAGPESA--AGGQEEEEGEDEEE 128
E +E PESA AG E+EE +DEEE
Sbjct: 66 GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEE 106
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 37.0 bits (84), Expect = 0.043
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 42 DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
D+ +L EL+ S + AA P +E+ E + EA EAV A GSG
Sbjct: 7 DMADLEELSRLSPLPPGSPGS-AARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGG 65
Query: 102 ------------ETVPKAEAGPESA--AGGQEEEEGEDEEE 128
E +E PESA AG E+EE +DEEE
Sbjct: 66 GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEE 106
>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
Length = 401
Score = 36.6 bits (83), Expect = 0.056
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 368 GKAGTNKPPRCR--GRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRRSKDMY 425
G GT R G A G P + L + G AP +L+ A PA + + +
Sbjct: 33 GALGTELQDLARRFGPEAAAGLVPLVVRALELLEQAAVGPAPDSLQVSAQPAEQELRRLR 92
Query: 426 HASKSAKRALSLR-------LFQTEEKIERTQRDIRSIQ----------EALARNAGRHS 468
++ +R L L Q +E +R + ++R+ EAL R
Sbjct: 93 EENERLRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQRGQETEALQEQLQRLL 152
Query: 469 VASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKK 507
+ +A+L+ KLA Q QL + +E QQ A K
Sbjct: 153 LVNAELRHKLAAMQTQLRAAQDRERERQQPGEAATPQAK 191
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 36.2 bits (82), Expect = 0.073
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 68 EERPGRQEDAEYQAFREAI-TEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEE---EG 123
E P + ++E + E + EA EA G + TV E G + EEE EG
Sbjct: 36 EPEPEPEPESEPEPEPELVEAEAAEASVEEPGEEAATVAATEEGDQEQDPEPEEEAAVEG 95
Query: 124 EDEEELSGTKVSAPYYSS 141
E+EEE + T +AP +S+
Sbjct: 96 EEEEEGAATAAAAPGHSA 113
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 35.8 bits (81), Expect = 0.095
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 344 HAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQ 403
H+ R KS DQ E +Q VGK + P R + + ++ R R V + EK
Sbjct: 260 HSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK-SKSRSRSQERRVEE---EK-- 313
Query: 404 GQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARN 463
G+ GR + S+S R+ R++ +S + R
Sbjct: 314 --------RGSVSRGRSQEKSLRQSRSRSRSKG-------GSRSRSRSRSKSKDKRKGRK 358
Query: 464 AGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMT 509
R S + R+ G R +AG ++++K DT + +
Sbjct: 359 RSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQS 404
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.095
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 435 LSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAG 494
L +++ EE++ ++ IR +E + R R +++E+ +RQ +LR QE
Sbjct: 232 LQEEMWRQEEELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKE 291
Query: 495 LQQEQRKADTHKKMTE 510
L++++++ KK+ E
Sbjct: 292 LREQEKELREQKKLRE 307
>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
sapiens]
Length = 631
Score = 35.8 bits (81), Expect = 0.095
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 401 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEA- 459
+LQ + +L R ++ ++AK LRL Q +E+ ER +++ +QEA
Sbjct: 312 RLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQ 371
Query: 460 ------LARNAGRHSVASAQLQEKLAGAQRQLGQLRAQ---EAGLQQEQ 499
L R +LQ+ L G R+ Q RA E L++E+
Sbjct: 372 RQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKEEE 420
Score = 30.4 bits (67), Expect = 4.0
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 429 KSAKRALSLRLFQTE--EKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAGAQRQLG 486
K+ + S+R+ QT E+ E + + ++E R R +LQ+++A R L
Sbjct: 447 KARRDEESVRIAQTRLLEEEEEKLKQLMQLKEEQERYIERAQQEKEELQQEMAQQSRSLQ 506
Query: 487 QLRAQEAGLQQEQRKAD 503
Q + Q ++Q +++AD
Sbjct: 507 QAQQQLEEVRQNRQRAD 523
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 35.8 bits (81), Expect = 0.095
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 419 RRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKL 478
RR + + A + R L Q EE++++ Q+D+ +E L + G + +L+
Sbjct: 2603 RRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQ 2662
Query: 479 AGAQRQLGQLRAQEAGLQQEQRKAD 503
+R+ QLR + L Q Q + D
Sbjct: 2663 KQLEREQEQLRREAERLSQRQTERD 2687
>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
Length = 1058
Score = 35.8 bits (81), Expect = 0.095
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 419 RRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKL 478
RR + + A + R L Q EE++++ Q+D+ +E L + G + +L+
Sbjct: 844 RRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQ 903
Query: 479 AGAQRQLGQLRAQEAGLQQEQRKAD 503
+R+ QLR + L Q Q + D
Sbjct: 904 KQLEREQEQLRREAERLSQRQTERD 928
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,758,798
Number of Sequences: 37866
Number of extensions: 996308
Number of successful extensions: 6587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 5724
Number of HSP's gapped (non-prelim): 758
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.