Guide to the Human Genome
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Search of human proteins with 133925791

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|133925791 zinc finger, CCCH-type with G patch domain isoform
c [Homo sapiens]
         (511 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|133925795 zinc finger, CCCH-type with G patch domain isoform ...  1009   0.0  
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ...  1009   0.0  
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ...   998   0.0  
gi|56788356 tuftelin interacting protein 11 [Homo sapiens]             55   2e-07
gi|8393259 tuftelin interacting protein 11 [Homo sapiens]              55   2e-07
gi|5032113 survival motor neuron domain containing 1 [Homo sapiens]    47   3e-05
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]      41   0.002
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]      41   0.002
gi|8922313 G patch domain containing 2 [Homo sapiens]                  40   0.007
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap...    39   0.011
gi|50962882 G patch domain containing 8 [Homo sapiens]                 39   0.011
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ...    38   0.019
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ...    38   0.019
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ...    38   0.019
gi|33589824 cell growth regulator with EF-hand domain 1 [Homo sa...    38   0.019
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           38   0.025
gi|154090997 coiled-coil domain containing 13 [Homo sapiens]           38   0.025
gi|13027602 DDRGK domain containing 1 [Homo sapiens]                   37   0.033
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    37   0.043
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    37   0.043
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]                  37   0.043
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             37   0.043
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             37   0.043
gi|93204881 Rab interacting lysosomal protein [Homo sapiens]           37   0.056
gi|30089948 protein phosphatase 1E [Homo sapiens]                      36   0.073
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     36   0.095
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li...    36   0.095
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa...    36   0.095
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]        36   0.095
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]        36   0.095

>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
           [Homo sapiens]
          Length = 511

 Score = 1009 bits (2610), Expect = 0.0
 Identities = 511/511 (100%), Positives = 511/511 (100%)

Query: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
           MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60

Query: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
           SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120

Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
           EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180

Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
           PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240

Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
           VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300

Query: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
           TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
Sbjct: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360

Query: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
           LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
Sbjct: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420

Query: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
           SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
Sbjct: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480

Query: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
           AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511


>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
           [Homo sapiens]
          Length = 511

 Score = 1009 bits (2610), Expect = 0.0
 Identities = 511/511 (100%), Positives = 511/511 (100%)

Query: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
           MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60

Query: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
           SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120

Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
           EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180

Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
           PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240

Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300
           VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG 300

Query: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360
           TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
Sbjct: 301 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 360

Query: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420
           LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
Sbjct: 361 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR 420

Query: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480
           SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
Sbjct: 421 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG 480

Query: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
           AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511


>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
           [Homo sapiens]
          Length = 531

 Score =  998 bits (2579), Expect = 0.0
 Identities = 511/531 (96%), Positives = 511/531 (96%), Gaps = 20/531 (3%)

Query: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60
           MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
Sbjct: 1   MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS 60

Query: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120
           SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
Sbjct: 61  SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE 120

Query: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180
           EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
Sbjct: 121 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC 180

Query: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240
           PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD 240

Query: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYAR---------- 290
           VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYAR          
Sbjct: 241 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSA 300

Query: 291 ----------VVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV 340
                     VVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV
Sbjct: 301 QSSALCPSLAVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV 360

Query: 341 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE 400
           EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE
Sbjct: 361 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE 420

Query: 401 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL 460
           KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL
Sbjct: 421 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL 480

Query: 461 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 511
           ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
Sbjct: 481 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF 531


>gi|56788356 tuftelin interacting protein 11 [Homo sapiens]
          Length = 837

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 306 FAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHA 345
           F  WE HT+GIG +LL KMGY  G+GLG++A+G + PI A
Sbjct: 142 FGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEA 181


>gi|8393259 tuftelin interacting protein 11 [Homo sapiens]
          Length = 837

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 306 FAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHA 345
           F  WE HT+GIG +LL KMGY  G+GLG++A+G + PI A
Sbjct: 142 FGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEA 181


>gi|5032113 survival motor neuron domain containing 1 [Homo
          sapiens]
          Length = 238

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLL 63
          E L   L +Y+AQLQQVE AL     + E  DL +L+ DL+E+IELT+  L+S + S  L
Sbjct: 3  EDLAKQLASYKAQLQQVEAALSG---NGENEDLLKLKKDLQEVIELTK-DLLSTQPSETL 58

Query: 64 AALD 67
          A+ D
Sbjct: 59 ASSD 62


>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
          Length = 930

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 300 GTCSSAFAGWEVHTR------GIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKS 353
           G  S+A   +E  TR       IGSR+L  MG++ G GLGR  +G V PI A    RG  
Sbjct: 839 GGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG 898

Query: 354 L 354
           L
Sbjct: 899 L 899


>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
          Length = 852

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 300 GTCSSAFAGWEVHTR------GIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKS 353
           G  S+A   +E  TR       IGSR+L  MG++ G GLGR  +G V PI A    RG  
Sbjct: 761 GGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG 820

Query: 354 L 354
           L
Sbjct: 821 L 821


>gi|8922313 G patch domain containing 2 [Homo sapiens]
          Length = 528

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 316 IGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSL 354
           IG+R+L  MG+  G GLGR  +G  EPI A+  P+G  L
Sbjct: 470 IGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGL 508


>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
           sapiens]
          Length = 835

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 271 TEATESDSDSDGTGDSS--YARVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEF 328
           T  + SDS+++G   SS  +     +D++  GT SS ++ +      +  +L+ KMG+  
Sbjct: 48  TSLSGSDSETEGKQHSSDSFDDAFKADSLVEGT-SSRYSMYN----SVSQKLMAKMGFRE 102

Query: 329 GKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRC 378
           G+GLG++++GR + + A      + L   +    ++  V      +P  C
Sbjct: 103 GEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWRDEPEPSAC 152


>gi|50962882 G patch domain containing 8 [Homo sapiens]
          Length = 1502

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 311 VHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVV 347
           + +  IG RLL K G++ G+GLG+  +GR +PI  VV
Sbjct: 38  IESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVV 74


>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
           [Homo sapiens]
          Length = 806

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%)

Query: 30  SSEQADLRQLQ-GDLKELIE---LTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREA 85
           SS   ++++L+  +LKE ++   L++  L +     L AALD+E  G +           
Sbjct: 2   SSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRP---------- 51

Query: 86  ITEAVEAPAAARGSGSETVPKAEAG--PESAAGGQEEEEGEDEEE 128
              A+E    +   G ++  ++ AG   E+AAGG EEEE E+EEE
Sbjct: 52  ---AMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEE 93


>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
           [Homo sapiens]
          Length = 825

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%)

Query: 30  SSEQADLRQLQ-GDLKELIE---LTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREA 85
           SS   ++++L+  +LKE ++   L++  L +     L AALD+E  G +           
Sbjct: 2   SSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRP---------- 51

Query: 86  ITEAVEAPAAARGSGSETVPKAEAG--PESAAGGQEEEEGEDEEE 128
              A+E    +   G ++  ++ AG   E+AAGG EEEE E+EEE
Sbjct: 52  ---AMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEE 93


>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
            sapiens]
          Length = 1983

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 37/186 (19%)

Query: 348  LPRGKSLD-QCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQA 406
            L RGK+L  Q +E L++Q              + + A      A R+  D L E+ + +A
Sbjct: 1350 LSRGKALAAQSLEELRRQLE---------EESKAKSALAHAVQALRHDCDLLREQHEEEA 1400

Query: 407  PGALE-------AGAAPAGRRSKDMYHAS--------KSAKRALSLRLFQTEEKIERTQR 451
                E       A A  A  RSK  Y A         + AK+ L+LRL + EE +E    
Sbjct: 1401 EAQAELQRLLSKANAEVAQWRSK--YEADAIQRTEELEEAKKKLALRLQEAEEGVEAANA 1458

Query: 452  DIRSIQEALAR----------NAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRK 501
               S+++A  R             R + A+A L +K    +R L + R QE  +Q+E   
Sbjct: 1459 KCSSLEKAKLRLQTESEDVTLELERATSAAAALDKKQRHLERALEERRRQEEEMQRELEA 1518

Query: 502  ADTHKK 507
            A    +
Sbjct: 1519 AQRESR 1524



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 5    SLESALQTYRAQLQQV-----ELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRK 59
            S E   +TY  QL +      EL       S+++  L+   G+L  L+E  E  +  + +
Sbjct: 1293 SAEKLCRTYEDQLSEAKIKVEELQRQLADASTQRGRLQTESGELSRLLEEKECLISQLSR 1352

Query: 60   SSLLAALDEERPGRQEDAEYQAFREAITEAVEA 92
               LAA   E   RQ + E +A + A+  AV+A
Sbjct: 1353 GKALAAQSLEELRRQLEEESKA-KSALAHAVQA 1384



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 420  RSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQ-EKL 478
            + K +   ++ AKR L   L  T+E +    +D + ++E L +     S  S +++ E+L
Sbjct: 1089 QEKKLRMDTERAKRKLEGDLKLTQESVADAAQDKQQLEEKLKKKDSELSQLSLRVEDEQL 1148

Query: 479  AGAQRQ--LGQLRAQEAGLQQE 498
             GAQ Q  + +L+A+   L++E
Sbjct: 1149 LGAQMQKKIKELQARAEELEEE 1170


>gi|33589824 cell growth regulator with EF-hand domain 1 [Homo
           sapiens]
          Length = 301

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 42  DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
           + K  +E    SL  V++    A  D + PG + +AE QA         EA   A G   
Sbjct: 190 EAKGQVEARRESLDPVQEPGGQAEADGDVPGPRGEAEGQA---------EAKGDAPGPRG 240

Query: 102 ETVPKAEA-----GPESAAGGQEE--EEGEDEEELSG 131
           E   +AEA     GP   AGGQ E  E GE+ +EL G
Sbjct: 241 EAGGQAEAEGDAPGPRGEAGGQAEARENGEEAKELPG 277



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 56  SVRKSSLLAALDEERPGRQEDAEYQ--AFREAITEAVEAPAAARGSGSETVPKAEA---- 109
           S+   S L    +E PG +E+A+ Q  A RE++    E    A   G    P+ EA    
Sbjct: 170 SLLAKSPLRQETQEAPGPREEAKGQVEARRESLDPVQEPGGQAEADGDVPGPRGEAEGQA 229

Query: 110 -------GPESAAGGQEEEEGE 124
                  GP   AGGQ E EG+
Sbjct: 230 EAKGDAPGPRGEAGGQAEAEGD 251


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 313  TRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQT 365
            T G+G+ L+ KMG+  G+GLG++ EG  EPI        K L    E  QK++
Sbjct: 2305 TGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRS 2357


>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
          Length = 715

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 23/117 (19%)

Query: 406 APGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEK-------IERTQRDIRSIQE 458
           A GA +AGA P   +  D         +AL  RL  T  K       I+  ++++R  Q+
Sbjct: 181 AKGATDAGAKPPRAQMGDRALLETPEVKALQDRLVATNLKMSDLRNQIQSVKQELRMAQK 240

Query: 459 ALARNAGR----------------HSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQ 499
            LAR  G                  +     LQ K+   ++QLGQ R+Q AG   ++
Sbjct: 241 VLAREVGEDINVQQLLSSPGTWRGRAQQILVLQSKVQELEKQLGQARSQSAGTASDE 297


>gi|13027602 DDRGK domain containing 1 [Homo sapiens]
          Length = 314

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 26/171 (15%)

Query: 350 RGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGA 409
           RG++     E L  +   G     +P        R GGRP  R     L  +LQ Q    
Sbjct: 25  RGRAASAGQEPLHNEELAGAGRVAQPGPLEPEEPRAGGRPRRRR---DLGSRLQAQ---- 77

Query: 410 LEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERT----------QRDIRSIQEA 459
                    RR++ +  A        ++ L Q EE +E+            + +R ++E 
Sbjct: 78  ---------RRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAKKLRKLEEK 128

Query: 460 LARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTE 510
            AR A R +  + + + K   +QR+    + +E    +E++K +  +K  E
Sbjct: 129 QARKAQREAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKARE 179


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 7   ESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAAL 66
           E+ ++  ++++++   A+   L  S + + ++   + +E  E  E   V+ +KS + A  
Sbjct: 459 ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEE-VAAKKSPVKATA 517

Query: 67  DE--ERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGE 124
            E  E  G +E+ E Q   E   E  ++  A  G GSE     E   E   G  E+EEGE
Sbjct: 518 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEG-GSEK----EGSSEKEEG--EQEEGE 570

Query: 125 DEEELSGTKVSA 136
            E E  G +  A
Sbjct: 571 TEAEAEGEEAEA 582



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 43  LKELIELTEASLVSVRKSSLLAALDEERPG--RQEDAEYQAFREAITEAVEAPAAARGSG 100
           ++E+IE T+           L A+ EE     ++E  E    +E   EA E   AA+ S 
Sbjct: 453 VEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSP 512

Query: 101 SE-TVP--KAEAGPESAAGGQEEEEGEDE 126
            + T P  K E G +    GQEEEE EDE
Sbjct: 513 VKATAPEVKEEEGEKEEEEGQEEEEEEDE 541


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 7   ESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAAL 66
           E+ ++  ++++++   A+   L  S + + ++   + +E  E  E   V+ +KS + A  
Sbjct: 83  ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEE-VAAKKSPVKATA 141

Query: 67  DE--ERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGE 124
            E  E  G +E+ E Q   E   E  ++  A  G GSE     E   E   G  E+EEGE
Sbjct: 142 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEG-GSEK----EGSSEKEEG--EQEEGE 194

Query: 125 DEEELSGTKVSA 136
            E E  G +  A
Sbjct: 195 TEAEAEGEEAEA 206



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 43  LKELIELTEASLVSVRKSSLLAALDEERPG--RQEDAEYQAFREAITEAVEAPAAARGSG 100
           ++E+IE T+           L A+ EE     ++E  E    +E   EA E   AA+ S 
Sbjct: 77  VEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSP 136

Query: 101 SE-TVP--KAEAGPESAAGGQEEEEGEDE 126
            + T P  K E G +    GQEEEE EDE
Sbjct: 137 VKATAPEVKEEEGEKEEEEGQEEEEEEDE 165


>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
          Length = 759

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 50  TEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEA 109
           T  S+ +   +  + A  E   G+ E  E         EA EAPA  R   S     AEA
Sbjct: 200 TALSVANCLGAQTVQAPAEPAAGKAEQGETSG-----REAPEAPAVGREDASAEDSCAEA 254

Query: 110 GPESAAGGQEEEEGEDEEELSGT-KVSAPYYSSWGTLEYHNAMVVGTEEAEDGS 162
               AA G    + E+EEE   T +V     +  G LE  ++    T+ A+ GS
Sbjct: 255 AASGAADGATAPKTEEEEEEEETAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGS 308


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 42  DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
           D+ +L EL+  S +        AA     P  +E+ E +   EA  EAV A     GSG 
Sbjct: 7   DMADLEELSRLSPLPPGSPGS-AARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGG 65

Query: 102 ------------ETVPKAEAGPESA--AGGQEEEEGEDEEE 128
                       E    +E  PESA  AG  E+EE +DEEE
Sbjct: 66  GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEE 106


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 42  DLKELIELTEASLVSVRKSSLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGS 101
           D+ +L EL+  S +        AA     P  +E+ E +   EA  EAV A     GSG 
Sbjct: 7   DMADLEELSRLSPLPPGSPGS-AARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGG 65

Query: 102 ------------ETVPKAEAGPESA--AGGQEEEEGEDEEE 128
                       E    +E  PESA  AG  E+EE +DEEE
Sbjct: 66  GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEE 106


>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
          Length = 401

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 368 GKAGTNKPPRCR--GRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRRSKDMY 425
           G  GT      R  G  A  G  P      + L +   G AP +L+  A PA +  + + 
Sbjct: 33  GALGTELQDLARRFGPEAAAGLVPLVVRALELLEQAAVGPAPDSLQVSAQPAEQELRRLR 92

Query: 426 HASKSAKRALSLR-------LFQTEEKIERTQRDIRSIQ----------EALARNAGRHS 468
             ++  +R L          L Q +E  +R + ++R+            EAL     R  
Sbjct: 93  EENERLRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQRGQETEALQEQLQRLL 152

Query: 469 VASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKK 507
           + +A+L+ KLA  Q QL   + +E   QQ    A    K
Sbjct: 153 LVNAELRHKLAAMQTQLRAAQDRERERQQPGEAATPQAK 191


>gi|30089948 protein phosphatase 1E [Homo sapiens]
          Length = 755

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 68  EERPGRQEDAEYQAFREAI-TEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEE---EG 123
           E  P  + ++E +   E +  EA EA     G  + TV   E G +      EEE   EG
Sbjct: 36  EPEPEPEPESEPEPEPELVEAEAAEASVEEPGEEAATVAATEEGDQEQDPEPEEEAAVEG 95

Query: 124 EDEEELSGTKVSAPYYSS 141
           E+EEE + T  +AP +S+
Sbjct: 96  EEEEEGAATAAAAPGHSA 113


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 344 HAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQ 403
           H+    R KS DQ  E +Q    VGK  +  P R + + ++   R   R V +   EK  
Sbjct: 260 HSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK-SKSRSRSQERRVEE---EK-- 313

Query: 404 GQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARN 463
                    G+   GR  +     S+S  R+             R++   +S  +   R 
Sbjct: 314 --------RGSVSRGRSQEKSLRQSRSRSRSKG-------GSRSRSRSRSKSKDKRKGRK 358

Query: 464 AGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMT 509
             R    S       +   R+ G  R  +AG  ++++K DT +  +
Sbjct: 359 RSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQS 404


>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
           [Homo sapiens]
          Length = 828

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 19/76 (25%), Positives = 41/76 (53%)

Query: 435 LSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAG 494
           L   +++ EE++   ++ IR  +E + R   R      +++E+    +RQ  +LR QE  
Sbjct: 232 LQEEMWRQEEELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKE 291

Query: 495 LQQEQRKADTHKKMTE 510
           L++++++    KK+ E
Sbjct: 292 LREQEKELREQKKLRE 307


>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
           sapiens]
          Length = 631

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 401 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEA- 459
           +LQ +   +L        R  ++     ++AK    LRL Q +E+ ER  +++  +QEA 
Sbjct: 312 RLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQ 371

Query: 460 ------LARNAGRHSVASAQLQEKLAGAQRQLGQLRAQ---EAGLQQEQ 499
                 L     R      +LQ+ L G  R+  Q RA    E  L++E+
Sbjct: 372 RQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKEEE 420



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 429 KSAKRALSLRLFQTE--EKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAGAQRQLG 486
           K+ +   S+R+ QT   E+ E   + +  ++E   R   R      +LQ+++A   R L 
Sbjct: 447 KARRDEESVRIAQTRLLEEEEEKLKQLMQLKEEQERYIERAQQEKEELQQEMAQQSRSLQ 506

Query: 487 QLRAQEAGLQQEQRKAD 503
           Q + Q   ++Q +++AD
Sbjct: 507 QAQQQLEEVRQNRQRAD 523


>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
          Length = 2817

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 419  RRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKL 478
            RR +  + A +   R     L Q EE++++ Q+D+   +E L +  G +     +L+   
Sbjct: 2603 RRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQ 2662

Query: 479  AGAQRQLGQLRAQEAGLQQEQRKAD 503
               +R+  QLR +   L Q Q + D
Sbjct: 2663 KQLEREQEQLRREAERLSQRQTERD 2687


>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
          Length = 1058

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 419 RRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKL 478
           RR +  + A +   R     L Q EE++++ Q+D+   +E L +  G +     +L+   
Sbjct: 844 RRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQ 903

Query: 479 AGAQRQLGQLRAQEAGLQQEQRKAD 503
              +R+  QLR +   L Q Q + D
Sbjct: 904 KQLEREQEQLRREAERLSQRQTERD 928


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,758,798
Number of Sequences: 37866
Number of extensions: 996308
Number of successful extensions: 6587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 5724
Number of HSP's gapped (non-prelim): 758
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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