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Search of human proteins with 133922598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|133922598 pyrin domain containing 2 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|133922598 pyrin domain containing 2 [Homo sapiens] 195 7e-51
gi|8923473 NLR family, pyrin domain containing 2 [Homo sapiens] 118 9e-28
gi|187937176 NACHT, leucine rich repeat and PYD containing 7 iso... 72 1e-13
gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isof... 72 1e-13
gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isof... 72 1e-13
gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens] 55 1e-08
gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens] 42 1e-04
gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens] 42 1e-04
gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens] 41 2e-04
gi|4557743 Mediterranean fever protein [Homo sapiens] 36 0.008
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho... 32 0.083
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens] 31 0.24
gi|23097246 pyrin domain containing 1 [Homo sapiens] 28 1.2
gi|4757734 absent in melanoma 2 [Homo sapiens] 28 2.1
gi|194018484 NLR family, pyrin domain containing 11 [Homo sapiens] 28 2.1
gi|119395764 NLR family, pyrin domain containing 3 isoform a [Ho... 27 3.5
gi|188536116 NLR family, pyrin domain containing 3 isoform c [Ho... 27 3.5
gi|188536002 NLR family, pyrin domain containing 3 isoform d [Ho... 27 3.5
gi|34878693 NLR family, pyrin domain containing 3 isoform a [Hom... 27 3.5
gi|34878690 NLR family, pyrin domain containing 3 isoform b [Hom... 27 3.5
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 27 3.5
gi|93102375 hypothetical protein LOC10827 [Homo sapiens] 27 3.5
gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo sapi... 27 4.6
gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapi... 27 4.6
gi|150417996 ubiquitin-activating enzyme E1-like 2 [Homo sapiens] 26 6.0
gi|120952851 strumpellin [Homo sapiens] 26 6.0
gi|150418007 RAN binding protein 2 [Homo sapiens] 26 7.8
gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8... 26 7.8
gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1 [... 26 7.8
gi|14149991 RANBP2-like and GRIP domain containing 5 isoform 2 [... 26 7.8
>gi|133922598 pyrin domain containing 2 [Homo sapiens]
Length = 97
Score = 195 bits (495), Expect = 7e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT
Sbjct: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
Query: 61 SHSCSYWAGMAAIQVFEKMNQTHLSGRADEHCVMPPP 97
SHSCSYWAGMAAIQVFEKMNQTHLSGRADEHCVMPPP
Sbjct: 61 SHSCSYWAGMAAIQVFEKMNQTHLSGRADEHCVMPPP 97
>gi|8923473 NLR family, pyrin domain containing 2 [Homo sapiens]
Length = 1062
Score = 118 bits (296), Expect = 9e-28
Identities = 61/90 (67%), Positives = 71/90 (78%)
Query: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
M SSA++ FNLQALLEQLSQDELSKFK LI T SL ELQ +P EVDKA+GKQLVEI T
Sbjct: 1 MVSSAQMGFNLQALLEQLSQDELSKFKYLITTFSLAHELQKIPHKEVDKADGKQLVEILT 60
Query: 61 SHSCSYWAGMAAIQVFEKMNQTHLSGRADE 90
+H SYW MA++QVFEKM++ LS RA +
Sbjct: 61 THCDSYWVEMASLQVFEKMHRMDLSERAKD 90
>gi|187937176 NACHT, leucine rich repeat and PYD containing 7
isoform 3 [Homo sapiens]
Length = 1037
Score = 71.6 bits (174), Expect = 1e-13
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 3 SSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSH 62
+S +L++ LQ LLEQL++DEL FKSL+ L LQ P +EV++A+GK+L EI +
Sbjct: 2 TSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNT 61
Query: 63 SCSYWAGMAAIQVFEKMNQTHL 84
S W A + + E+MN T L
Sbjct: 62 SSENWIRNATVNILEEMNLTEL 83
>gi|75709196 NACHT, leucine rich repeat and PYD containing 7
isoform 2 [Homo sapiens]
Length = 980
Score = 71.6 bits (174), Expect = 1e-13
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 3 SSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSH 62
+S +L++ LQ LLEQL++DEL FKSL+ L LQ P +EV++A+GK+L EI +
Sbjct: 2 TSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNT 61
Query: 63 SCSYWAGMAAIQVFEKMNQTHL 84
S W A + + E+MN T L
Sbjct: 62 SSENWIRNATVNILEEMNLTEL 83
>gi|46049100 NACHT, leucine rich repeat and PYD containing 7
isoform 1 [Homo sapiens]
Length = 1009
Score = 71.6 bits (174), Expect = 1e-13
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 3 SSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSH 62
+S +L++ LQ LLEQL++DEL FKSL+ L LQ P +EV++A+GK+L EI +
Sbjct: 2 TSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNT 61
Query: 63 SCSYWAGMAAIQVFEKMNQTHL 84
S W A + + E+MN T L
Sbjct: 62 SSENWIRNATVNILEEMNLTEL 83
>gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens]
Length = 994
Score = 55.1 bits (131), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
MA+S DF L LE+L ++E KFK ++ ++L EL+ +P TEV KA+ ++L +
Sbjct: 1 MAASFFSDFGLMWYLEELKKEEFRKFKEHLKQMTLQLELKQIPWTEVKKASREELANLLI 60
Query: 61 SHSCSYWAGMAAIQVFEKMNQTHL 84
H A +++F+KM++ L
Sbjct: 61 KHYEEQQAWNITLRIFQKMDRKDL 84
>gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens]
Length = 991
Score = 42.0 bits (97), Expect = 1e-04
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
MA S DF L L++L ++E KFK L++ EL+ +P E+ KA+ + + ++
Sbjct: 1 MAESFFSDFGLLWYLKELRKEEFWKFKELLKQPLEKFELKPIPWAELKKASKEDVAKLLD 60
Query: 61 SHSCSYWAGMAAIQVFEKMNQTHLSGRADE 90
H A + +F ++N+ L +A E
Sbjct: 61 KHYPGKQAWEVTLNLFLQINRKDLWTKAQE 90
>gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]
Length = 1093
Score = 41.6 bits (96), Expect = 1e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 ASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTS 61
+SS DF L LE+L+++EL+ FK ++ ++ E P EV KA + L +
Sbjct: 6 SSSFFPDFGLLLYLEELNKEELNTFKLFLKE-TMEPEHGLTPWNEVKKARREDLANLMKK 64
Query: 62 HSCSYWAGMAAIQVFEKMNQTHLSGRADE 90
+ A ++++F KMN L RA E
Sbjct: 65 YYPGEKAWSVSLKIFGKMNLKDLCERAKE 93
>gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]
Length = 1200
Score = 41.2 bits (95), Expect = 2e-04
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 9 FNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWA 68
+ LQ L +L ++E FK L++ S ++PQ E++ AN + L + + + A
Sbjct: 63 YGLQWCLYELDKEEFQTFKELLKKKSSESTTCSIPQFEIENANVECLALLLHEYYGASLA 122
Query: 69 GMAAIQVFEKMNQTHLSGRA 88
+I +FE MN LS +A
Sbjct: 123 WATSISIFENMNLRTLSEKA 142
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/76 (23%), Positives = 40/76 (52%)
Query: 10 NLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAG 69
+L + LE+L + KFK ++ S+ KE +P++++ +A ++ + ++ +A
Sbjct: 8 HLLSTLEELVPYDFEKFKFKLQNTSVQKEHSRIPRSQIQRARPVKMATLLVTYYGEEYAV 67
Query: 70 MAAIQVFEKMNQTHLS 85
+QV +NQ L+
Sbjct: 68 QLTLQVLRAINQRLLA 83
>gi|21955154 NLR family, pyrin domain containing 12 isoform 2
[Homo sapiens]
Length = 1061
Score = 32.3 bits (72), Expect = 0.083
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 11 LQALLEQLSQDELSKFKSLIRTIS-LGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAG 69
L LE+L EL KFK + T + LG+ +P ++KA ++ ++ +H A
Sbjct: 13 LSTYLEELEAVELKKFKLYLGTATELGEG--KIPWGSMEKAGPLEMAQLLITHFGPEEAW 70
Query: 70 MAAIQVFEKMNQTHL 84
A+ FE++N+ L
Sbjct: 71 RLALSTFERINRKDL 85
>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
Length = 892
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVE 57
L A LE+LSQ++L +F+ +R + G + +++P +++A+ L E
Sbjct: 22 LLAALEELSQEQLKRFRHKLRDV--GPDGRSIPWGRLERADAVDLAE 66
>gi|23097246 pyrin domain containing 1 [Homo sapiens]
Length = 89
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 14 LLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGMAA 72
+LE L+ +EL KFK + T+ L + + +P+ + + + +V++ SY+ AA
Sbjct: 11 VLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLD---IVDLTDKLVASYYEDYAA 66
>gi|4757734 absent in melanoma 2 [Homo sapiens]
Length = 343
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 15 LEQLSQDELSKFKSLIR---TISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGMA 71
L+ ++ +EL +FK + I+ GK + AN Q+ + ++ + A M
Sbjct: 14 LDNITDEELDRFKFFLSDEFNIATGK---------LHTANRIQVATLMIQNAGAVSAVMK 64
Query: 72 AIQVFEKMNQTHLSGRADE 90
I++F+K+N L+ R E
Sbjct: 65 TIRIFQKLNYMLLAKRLQE 83
>gi|194018484 NLR family, pyrin domain containing 11 [Homo
sapiens]
Length = 1033
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 1 MASSAELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDK 49
MA S DF+L LE LS E FK + L +L P ++ K
Sbjct: 1 MAESDSTDFDLLWYLENLSDKEFQSFKKYLARKILDFKLPQFPLIQMTK 49
>gi|119395764 NLR family, pyrin domain containing 3 isoform a
[Homo sapiens]
Length = 1036
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGM 70
L LE L +L KFK + K +P+ + +KA+ L + + A
Sbjct: 10 LARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWA 69
Query: 71 AAIQVFEKMNQTHLSGRA 88
A+ +F +N+ L +A
Sbjct: 70 MAVWIFAAINRRDLYEKA 87
>gi|188536116 NLR family, pyrin domain containing 3 isoform c
[Homo sapiens]
Length = 979
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGM 70
L LE L +L KFK + K +P+ + +KA+ L + + A
Sbjct: 10 LARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWA 69
Query: 71 AAIQVFEKMNQTHLSGRA 88
A+ +F +N+ L +A
Sbjct: 70 MAVWIFAAINRRDLYEKA 87
>gi|188536002 NLR family, pyrin domain containing 3 isoform d
[Homo sapiens]
Length = 979
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGM 70
L LE L +L KFK + K +P+ + +KA+ L + + A
Sbjct: 10 LARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWA 69
Query: 71 AAIQVFEKMNQTHLSGRA 88
A+ +F +N+ L +A
Sbjct: 70 MAVWIFAAINRRDLYEKA 87
>gi|34878693 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGM 70
L LE L +L KFK + K +P+ + +KA+ L + + A
Sbjct: 10 LARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWA 69
Query: 71 AAIQVFEKMNQTHLSGRA 88
A+ +F +N+ L +A
Sbjct: 70 MAVWIFAAINRRDLYEKA 87
>gi|34878690 NLR family, pyrin domain containing 3 isoform b [Homo
sapiens]
Length = 922
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 11 LQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTSHSCSYWAGM 70
L LE L +L KFK + K +P+ + +KA+ L + + A
Sbjct: 10 LARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWA 69
Query: 71 AAIQVFEKMNQTHLSGRA 88
A+ +F +N+ L +A
Sbjct: 70 MAVWIFAAINRRDLYEKA 87
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 7 LDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANG 52
L +L L + QD L K ++S ELQ P EV K+ G
Sbjct: 1700 LRVSLMPLRLNIDQDALFFLKDFFTSLSAEVELQMTPDPEVKKSPG 1745
>gi|93102375 hypothetical protein LOC10827 [Homo sapiens]
Length = 505
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 15 LEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFT 60
LE LSQ+ K KS++ ++S G+EL+T+ K +QL E F+
Sbjct: 253 LEMLSQESEIKVKSILNSLS-GEELETL------KVELEQLKETFS 291
>gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo
sapiens]
Length = 1758
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ +S GK+ L+ V +T +K+ L + +F+S S
Sbjct: 341 QNLLEMMACDRLSQSGHMLLNLSRGKQDFLKVVVETFANKSGQSALYDALFSSQS 395
>gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo
sapiens]
Length = 1758
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ +S GK+ L+ V +T +K+ L + +F+S S
Sbjct: 341 QNLLEMMACDRLSQSGHMLLNLSRGKQDFLKVVVETFANKSGQSALYDALFSSQS 395
>gi|150417996 ubiquitin-activating enzyme E1-like 2 [Homo sapiens]
Length = 1052
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 5 AELDFNLQALLEQLSQDELSKFK---SLIRTISLGKELQTVPQTEVDKANG-KQLVEIFT 60
AE D + ALL LS+ ++ +FK +++T ++ VP + D+ N QL +
Sbjct: 774 AEEDLSADALLNILSEVKIQEFKPSNKVVQTDETARKPDHVPISSEDERNAIFQLEKAIL 833
Query: 61 SHSCSYWAGMAAIQVFEK 78
S+ + A+ FEK
Sbjct: 834 SNEATKSDLQMAVLSFEK 851
>gi|120952851 strumpellin [Homo sapiens]
Length = 1159
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 6 ELDFNLQALLEQLSQDELSKFKSLIRTISLGKELQTVPQTEVDKANGKQLVEIFTS 61
+L+ NLQ Q D +IRTI++ +E+ Q D + QL++ FTS
Sbjct: 513 QLESNLQVC--QFLADTRKFLHQMIRTINIKEEVLITMQIVGDLSFAWQLIDSFTS 566
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ +S GK+ L+ + +T +K+ L + +F+S S
Sbjct: 340 QNLLEMMACDRLSQSGHMLLNLSRGKQDFLKEIVETFANKSGQSALYDALFSSQS 394
>gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8
[Homo sapiens]
Length = 1765
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ ++S GK+ L+ V +T +K L + +F+S S
Sbjct: 341 QNLLEMMACDRLSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQS 395
>gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1
[Homo sapiens]
Length = 1765
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ ++S GK+ L+ V +T +K L + +F+S S
Sbjct: 341 QNLLEMMACDRLSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQS 395
>gi|14149991 RANBP2-like and GRIP domain containing 5 isoform 2
[Homo sapiens]
Length = 904
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 12 QALLEQLSQDELSKFKSLIRTISLGKE--LQTVPQTEVDKANGKQLVE-IFTSHS 63
Q LLE ++ D LS+ ++ ++S GK+ L+ V +T +K L + +F+S S
Sbjct: 341 QNLLEMMACDRLSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQS 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,411,358
Number of Sequences: 37866
Number of extensions: 108920
Number of successful extensions: 317
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 32
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.