Guide to the Human Genome
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Name: PYDC2 Sequence: fasta or formatted (97aa) NCBI GI: 133922598
Description:

pyrin domain containing 2

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          8           2
 C cysteine            2.1          2           1
 D aspartate           4.1          4           1
 E glutamate           8.2          8           1
 F phenylalanine       4.1          4           1
 G glycine             4.1          4           1
 H histidine           3.1          3           1
 I isoleucine          4.1          4           1
 K lysine              6.2          6           1
 L leucine            11.3         11           2
 M methionine          4.1          4           1
 N asparagine          3.1          3           1
 P proline             4.1          4           3
 Q glutamine           8.2          8           1
 R arginine            2.1          2           1
 S serine             10.3         10           2
 T threonine           5.2          5           1
 V valine              5.2          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyrin domain containing 2 
NLRP2                 0.547   NLR family, pyrin domain containing 2 
NLRP7                 0.276   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.276   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.276   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP4                 0.176   NLR family, pyrin domain containing 4 
NLRP9                 0.100   NLR family, pyrin domain containing 9 
NLRP14                0.100   NLR family, pyrin domain containing 14 
NLRP5                 0.094   NACHT, LRR and PYD containing protein 5 
MEFV                  0.065   Mediterranean fever protein 
NLRP12                0.041   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP6                 0.035   NLR family, pyrin domain containing 6 
PYDC1                 0.018   pyrin domain containing 1 
AIM2                  0.018   absent in melanoma 2 
NLRP11                0.018   NLR family, pyrin domain containing 11 
NLRP3                 0.012   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.012   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.012   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.012   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.012   NLR family, pyrin domain containing 3 isoform b [Hom...
ATG2B                 0.012   ATG2 autophagy related 2 homolog B 
FAM114A2              0.012   hypothetical protein LOC10827 
RGPD3                 0.012   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.012   RANBP2-like and GRIP domain containing 4 
UBA6                  0.006   ubiquitin-activating enzyme E1-like 2 
KIAA0196              0.006   strumpellin 
RANBP2                0.006   RAN binding protein 2 
RGPD8                 0.006   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.006   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD5                 0.006   RANBP2-like and GRIP domain containing 5 isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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