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Search of human proteins with 13376306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376306 MAP6 domain containing 1 [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376306 MAP6 domain containing 1 [Homo sapiens] 416 e-117
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 77 1e-14
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 77 1e-14
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 40 0.001
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 40 0.001
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ... 40 0.001
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|55741675 hypothetical protein LOC22889 [Homo sapiens] 37 0.014
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 37 0.014
gi|224593260 WBP2 N-terminal like [Homo sapiens] 36 0.019
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.019
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 35 0.032
gi|28269693 xylosyltransferase I [Homo sapiens] 35 0.042
gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens] 35 0.042
gi|61699226 pulmonary surfactant-associated protein D precursor ... 35 0.055
gi|62243769 signal transducing adaptor family member 2 isoform 2... 35 0.055
gi|62243734 signal transducing adaptor family member 2 isoform 1... 35 0.055
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 35 0.055
gi|119120861 formin-like 3 isoform 2 [Homo sapiens] 35 0.055
gi|119120874 formin-like 3 isoform 1 [Homo sapiens] 35 0.055
gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting ... 35 0.055
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 34 0.072
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 34 0.072
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 34 0.072
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 34 0.094
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 33 0.12
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 33 0.12
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
>gi|13376306 MAP6 domain containing 1 [Homo sapiens]
Length = 199
Score = 416 bits (1070), Expect = e-117
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS 60
MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS
Sbjct: 1 MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS 60
Query: 61 GRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARGVYVLPI 120
GRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARGVYVLPI
Sbjct: 61 GRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARGVYVLPI 120
Query: 121 GDADAAAAVTTSYRQEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQVPEVRKK 180
GDADAAAAVTTSYRQEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQVPEVRKK
Sbjct: 121 GDADAAAAVTTSYRQEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQVPEVRKK 180
Query: 181 FTPNPSAIFQASAPRILNV 199
FTPNPSAIFQASAPRILNV
Sbjct: 181 FTPNPSAIFQASAPRILNV 199
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 76.6 bits (187), Expect = 1e-14
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 1 MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS 60
MAWPCI+R CC+AR WNQLD++D+AVPL YS+ +E PG A + PP
Sbjct: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEA-TEHPG----APPQPPPPQQQAQP 55
Query: 61 GRDVPLTQYQRDFGLWTTPA-GPKDP---PPGRGPGAGGRRGKSSAQSSAPPAPGARGVY 116
P R + T PA G D G PG G R ++ + P PG
Sbjct: 56 ALAPPSA---RAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPG----- 107
Query: 117 VLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTK 152
+G + + RQ+++AW +P S + +
Sbjct: 108 ---LGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPR 140
Score = 40.8 bits (94), Expect = 8e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 124 DAAAAVTTSYRQEFQAWTGVKPSRSTKTKP 153
+ A+AV++SYR EF+AWT +KP + K KP
Sbjct: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKP 321
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 76.6 bits (187), Expect = 1e-14
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 1 MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS 60
MAWPCI+R CC+AR WNQLD++D+AVPL YS+ +E PG A + PP
Sbjct: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEA-TEHPG----APPQPPPPQQQAQP 55
Query: 61 GRDVPLTQYQRDFGLWTTPA-GPKDP---PPGRGPGAGGRRGKSSAQSSAPPAPGARGVY 116
P R + T PA G D G PG G R ++ + P PG
Sbjct: 56 ALAPPSA---RAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPG----- 107
Query: 117 VLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTK 152
+G + + RQ+++AW +P S + +
Sbjct: 108 ---LGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPR 140
Score = 40.8 bits (94), Expect = 8e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 124 DAAAAVTTSYRQEFQAWTGVKPSRSTKTKP 153
+ A+AV++SYR EF+AWT +KP + K KP
Sbjct: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKP 321
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 20 DRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTP 79
DR V + G D PG GG R PP+ +RD+ +
Sbjct: 245 DRRGRPVGFPMRGRGGFDRMPPGRGG----RPMPPS--------------RRDYDDMSPR 286
Query: 80 AGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARG 114
GP PPPGR GGR G + PP P RG
Sbjct: 287 RGPPPPPPGR----GGRGGSRARNLPLPPPPPPRG 317
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 20 DRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTP 79
DR V + G D PG GG R PP+ +RD+ +
Sbjct: 245 DRRGRPVGFPMRGRGGFDRMPPGRGG----RPMPPS--------------RRDYDDMSPR 286
Query: 80 AGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARG 114
GP PPPGR GGR G + PP P RG
Sbjct: 287 RGPPPPPPGR----GGRGGSRARNLPLPPPPPPRG 317
>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 20 DRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTP 79
DR V + G D PG GG R PP+ +RD+ +
Sbjct: 245 DRRGRPVGFPMRGRGGFDRMPPGRGG----RPMPPS--------------RRDYDDMSPR 286
Query: 80 AGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARG 114
GP PPPGR GGR G + PP P RG
Sbjct: 287 RGPPPPPPGR----GGRGGSRARNLPLPPPPPPRG 317
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.014
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 35 DLDSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAG 94
D D + G GG A G GA +GR + R G P P +G GA
Sbjct: 46 DCDIKGGGGGGGA---GGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 102
Query: 95 GRRGKSSAQSSAPPAPGARG 114
R +A SA PAPG G
Sbjct: 103 ARADALTAGKSAEPAPGGEG 122
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 23/62 (37%)
Query: 38 SEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRR 97
S EP GG RG+ A R+S R PGRGPGA
Sbjct: 113 SAEPAPGGEGGERGEESASERESER-----------------------APGRGPGARSSA 149
Query: 98 GK 99
G+
Sbjct: 150 GE 151
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.014
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 35 DLDSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAG 94
D D + G GG A G GA +GR + R G P P +G GA
Sbjct: 46 DCDIKGGGGGGGA---GGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 102
Query: 95 GRRGKSSAQSSAPPAPGARG 114
R +A SA PAPG G
Sbjct: 103 ARADALTAGKSAEPAPGGEG 122
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 23/62 (37%)
Query: 38 SEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRR 97
S EP GG RG+ A R+S R PGRGPGA
Sbjct: 113 SAEPAPGGEGGERGEESASERESER-----------------------APGRGPGARSSA 149
Query: 98 GK 99
G+
Sbjct: 150 GE 151
>gi|55741675 hypothetical protein LOC22889 [Homo sapiens]
Length = 614
Score = 36.6 bits (83), Expect = 0.014
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 91 PGAGGRRGKSSAQSSA------PPAPGAR---------GVYVLPIGDADAAAAVTTSYRQ 135
PGAGGRR K + A P APG G P G DAAAAV
Sbjct: 9 PGAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAAPSGALDAAAAVAAKINA 68
Query: 136 EFQAWTGVKPSRSTKTK---PARVITTHTS 162
A +KP+++ K P + +T++ S
Sbjct: 69 MLMAKGKLKPTQNASEKLQAPGKGLTSNKS 98
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 36.6 bits (83), Expect = 0.014
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 39 EEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPK-DPPPGRGPGAGGRR 97
EE G GG ++ G P A D P G PAG DP +G GRR
Sbjct: 64 EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRR 123
Query: 98 GKSSAQSSA---PPAPG-ARGVYVLPIGDADAAAA 128
K+ A ++A P PG A P+ D AAAA
Sbjct: 124 KKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAA 158
>gi|224593260 WBP2 N-terminal like [Homo sapiens]
Length = 309
Score = 36.2 bits (82), Expect = 0.019
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 31 HGYSDLDSEEPGTGGAAS--RRGQPPAG--ARDSGRDVPLTQYQRD-FGLWTTPAGPKDP 85
+G + +E P G AS R G PP G A +G P Y G T P G P
Sbjct: 196 YGAQPVGNEGPPVGYRASPVRYGAPPLGYGAPPAGYGAPPLGYGAPPLGYGTPPLGYGAP 255
Query: 86 PPGRGPGAGGRRGKSSAQSSAPPAPGAR 113
P G G G G + ++P GAR
Sbjct: 256 PLGYGAPPAGNEGPPAGYRASPAGSGAR 283
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.019
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 37 DSEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG----PG 92
D EPG G A G P A + + P + PAGP PP G PG
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 860
Query: 93 AGGRRGKSSAQSSAPPAPGARG 114
A G RG S+ A PGA G
Sbjct: 861 AKGARG-SAGPPGATGFPGAAG 881
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 42 GTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLW----TTPAG-PKDPPPGRGPGAGGR 96
G GAA R G PP + ++G P ++ G T PAG P + P PG G
Sbjct: 875 GFPGAAGRVG-PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGE 933
Query: 97 RGKSSAQ--SSAPPAPGARGV 115
+G A + AP PG +G+
Sbjct: 934 KGSPGADGPAGAPGTPGPQGI 954
Score = 30.4 bits (67), Expect = 1.0
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 37 DSEEPGTGGAASRRGQP-PAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGP-GAG 94
++ +PG G G P P+GAR +R F G + PP GP GA
Sbjct: 654 EAGKPGEQGVPGDLGAPGPSGARG----------ERGF---PGERGVQGPPGPAGPRGAN 700
Query: 95 GRRGKSSAQ--SSAPPAPGARG 114
G G A+ + AP APG++G
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQG 722
Score = 29.3 bits (64), Expect = 2.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 79 PAGPKDPPPGRG-PGAGGRRGKSSAQSS--APPAPGARG 114
P GP PP G PG GR G A+ S +PGA+G
Sbjct: 996 PPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Score = 29.3 bits (64), Expect = 2.3
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 37 DSEEPGTGGAASRRG----QPPAGARDSGRDVPLTQYQRDFGL--------WTTPAGPKD 84
D E G G A G + PAG + D T Q D G+ P GP
Sbjct: 1065 DRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPG 1124
Query: 85 PPPGRGP-GAGGRRGKSSAQSSAPPAPGARGVYVLP 119
P +GP GA G G SA APG G+ LP
Sbjct: 1125 SPGEQGPSGASGPAGPRGPPGSA-GAPGKDGLNGLP 1159
Score = 28.9 bits (63), Expect = 3.0
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
Query: 41 PGTGGAASRRGQP-PAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPP----PGRGPGAGG 95
PG GA +G+ P G R S + G+ P GP P P PGA G
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGS---------EGPQGVRGEP-GPPGPAGAAGPAGNPGADG 392
Query: 96 RRGKSSAQSS-----APPAPGARG 114
+ G A + AP PGARG
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARG 416
Score = 28.9 bits (63), Expect = 3.0
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG-PGAGGRRGK 99
PG G A +G PAG R S PAGPK P G PG G G
Sbjct: 496 PGADGVAGPKG--PAGERGS----------------PGPAGPKGSPGEAGRPGEAGLPG- 536
Query: 100 SSAQSSAPPAPGARG 114
+ + +P +PG G
Sbjct: 537 AKGLTGSPGSPGPDG 551
Score = 28.5 bits (62), Expect = 3.9
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 41 PGTGGAASRRG--QPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG-PGAGGRR 97
PG GA +G PP + G P+ P GP PP G G G+
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMG-----------PRGPPGPPGKNGDDGEAGKP 238
Query: 98 GKSSAQSSAPPAP-GARGV 115
G+ + PP P GARG+
Sbjct: 239 GRPGER--GPPGPQGARGL 255
Score = 28.1 bits (61), Expect = 5.1
Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 24/98 (24%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDV---PLTQYQRDFGLWTTPAGPKD---PPPGRG---- 90
PG GAA G P A + + P F P+GP+ PP +G
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435
Query: 91 PGAGGRRGKSSAQS-------SAPPAP-------GARG 114
PGA G +G + A+ PP P GARG
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARG 473
Score = 28.1 bits (61), Expect = 5.1
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKS 100
PG G+ R G P A D G P G P P P P G G RG++
Sbjct: 1018 PGAEGSPGRDGSPGAKG-DRGETGPA-------GPPGAPGAPGAPGPVGPAGKSGDRGET 1069
Query: 101 SAQSSAPPA--PGARG 114
A P GARG
Sbjct: 1070 GPAGPAGPVGPVGARG 1085
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 35.4 bits (80), Expect = 0.032
Identities = 23/71 (32%), Positives = 27/71 (38%)
Query: 44 GGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQ 103
GG G GA +GR + R G P P +G GA R +A
Sbjct: 21 GGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAG 80
Query: 104 SSAPPAPGARG 114
SA PAPG G
Sbjct: 81 KSAEPAPGGEG 91
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 23/62 (37%)
Query: 38 SEEPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRR 97
S EP GG RG+ A R+S R PGRGPGA
Sbjct: 82 SAEPAPGGEGGERGEESASERESER-----------------------APGRGPGARSSA 118
Query: 98 GK 99
G+
Sbjct: 119 GE 120
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 35.0 bits (79), Expect = 0.042
Identities = 43/165 (26%), Positives = 61/165 (36%), Gaps = 37/165 (22%)
Query: 1 MAWPCISRLCCLARRWNQLDRSDVAV----PLTLHGYSDLDSEEPGTGGAASRRGQPPAG 56
+A PC RL ARR + + + V L + +S LDS GA RRG G
Sbjct: 2 VAAPCARRL---ARRSHSALLAALTVLLLQTLVVWNFSSLDS------GAGERRGGAAVG 52
Query: 57 ARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQSSAPPAPGARGVY 116
+ P + +R L PA + G G G GGR ++ A+ P P
Sbjct: 53 GGEQPPPAPAPRRERR-DLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPGEP------ 105
Query: 117 VLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTKPARVITTHT 161
R + A G P+R+ P+ +IT T
Sbjct: 106 -----------------RGQQPASRGALPARALDPHPSPLITLET 133
>gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens]
Length = 451
Score = 35.0 bits (79), Expect = 0.042
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 76 WTTPAGPKDPPPGRGPGAGGRRGKSSAQSSAPP--APGARGVYVLPIGDADAAAAVTTSY 133
W T + P+ PG G G+ G G+ S Q + PP A G G P DA+AA A
Sbjct: 23 WQTDSEPEPEEPGPGGGSEG-PGQESEQPAQPPEQAGGRPGASPAPDEDAEAAGAEQGGD 81
Query: 134 RQEFQAWTGVKPSRS 148
E A KP RS
Sbjct: 82 STEATA----KPKRS 92
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 34.7 bits (78), Expect = 0.055
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 40 EPGTGGAASRRGQP----PAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGG 95
+PG GAA + G P P G + V + D G P+GP PP PG G
Sbjct: 65 DPGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTG----PSGPPGPP--GVPGPAG 118
Query: 96 RRGKSSAQSSAPP--APGARG 114
R G Q + P PG +G
Sbjct: 119 REGPLGKQGNIGPQGKPGPKG 139
>gi|62243769 signal transducing adaptor family member 2 isoform 2
[Homo sapiens]
Length = 403
Score = 34.7 bits (78), Expect = 0.055
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 75 LWTTPAGPKDPPPGRGPGAGGRRGKSSAQSS-----APPAPGARGVYVLPIGDADA 125
+W P+ P PG P GG + S A S PP P YV PIGD A
Sbjct: 267 VWVAPSAPG---PGPAPCTGGPKPLSPASSQDKLPPLPPLPNQEENYVTPIGDGPA 319
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 34.7 bits (78), Expect = 0.055
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 75 LWTTPAGPKDPPPGRGPGAGGRRGKSSAQSS-----APPAPGARGVYVLPIGDADA 125
+W P+ P PG P GG + S A S PP P YV PIGD A
Sbjct: 267 VWVAPSAPG---PGPAPCTGGPKPLSPASSQDKLPPLPPLPNQEENYVTPIGDGPA 319
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 34.7 bits (78), Expect = 0.055
Identities = 46/139 (33%), Positives = 50/139 (35%), Gaps = 45/139 (32%)
Query: 39 EEPGTGG-----AASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGA 93
E PG GG A S PPA A R G PAGP PGRG A
Sbjct: 67 EHPGAGGPLCFPARSAAWGPPARA------------SRAAGRRAGPAGPPCRAPGRGRAA 114
Query: 94 GGRRGKSSAQSSAPPAPG-ARGVYVLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTK 152
RR PAPG ARG P G A A S S T++
Sbjct: 115 ATRRS---------PAPGTARG---SPAGVERAGGATAAS-------------SAGTRSV 149
Query: 153 PARVITTHTSGWDSSPGAG 171
PAR + G +S GAG
Sbjct: 150 PARRLPPPCGG--TSLGAG 166
>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
Length = 976
Score = 34.7 bits (78), Expect = 0.055
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 30 LHGYSDLDSEEPGTGGAAS-RRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPG 88
+ G +DSE G A G PP+ D P + L PA P PPP
Sbjct: 424 VRGLESVDSEALARVGPAELSEGMPPS---DLDLLAPAPPPEEVLPLPPPPAPPLPPPPP 480
Query: 89 RGPGAGGRRGKSSAQSSAPPAPGARGVYVLPIG--DADAAAAVTTSYRQEFQAWTGVKPS 146
P APP PGA VL +G + T +R WT +KP+
Sbjct: 481 PLP---------DKCPPAPPLPGAAPSVVLTVGLSAIRIKKPIKTKFRLPVFNWTALKPN 531
Query: 147 RSTKT 151
+ + T
Sbjct: 532 QISGT 536
>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
Length = 1027
Score = 34.7 bits (78), Expect = 0.055
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 30 LHGYSDLDSEEPGTGGAAS-RRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPG 88
+ G +DSE G A G PP+ D P + L PA P PPP
Sbjct: 475 VRGLESVDSEALARVGPAELSEGMPPS---DLDLLAPAPPPEEVLPLPPPPAPPLPPPPP 531
Query: 89 RGPGAGGRRGKSSAQSSAPPAPGARGVYVLPIG--DADAAAAVTTSYRQEFQAWTGVKPS 146
P APP PGA VL +G + T +R WT +KP+
Sbjct: 532 PLP---------DKCPPAPPLPGAAPSVVLTVGLSAIRIKKPIKTKFRLPVFNWTALKPN 582
Query: 147 RSTKT 151
+ + T
Sbjct: 583 QISGT 587
>gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting
protein [Homo sapiens]
Length = 1209
Score = 34.7 bits (78), Expect = 0.055
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 40 EPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGK 99
+PG GGA QP A R P + G T P PG G G G + G
Sbjct: 149 QPGAGGAQPGAAQPSRAAGGGSRCKPEPAH----GSAPTALCPPKLVPGSGGGPGSQVGS 204
Query: 100 SSAQSSAPP 108
S Q SA P
Sbjct: 205 SKDQGSASP 213
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 34.3 bits (77), Expect = 0.072
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG-PGAGGRRGK 99
PG G+A RG+P G R P G + PP RG PG G RG
Sbjct: 1783 PGPPGSAGARGEPGPGGRPGFPGTP---------------GMQGPPGERGLPGEKGERGT 1827
Query: 100 -SSAQSSAPPAPGARG 114
SS P PG +G
Sbjct: 1828 GSSGPRGLPGPPGPQG 1843
Score = 32.0 bits (71), Expect = 0.36
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 40 EPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRG- 98
EPG GG G P R +P + +R G +GP+ P GP R G
Sbjct: 1794 EPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTG----SSGPRGLPGPPGPQGESRTGP 1849
Query: 99 KSSAQSSAPPAPGAR 113
S S PP P R
Sbjct: 1850 PGSTGSRGPPGPPGR 1864
Score = 31.2 bits (69), Expect = 0.61
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 81 GPKDPP-PGRGPGAGGRRGKSSAQSSAPPAPGARG 114
GP PP P GPGA G RG+ + P PG RG
Sbjct: 1583 GPPGPPGPAGGPGAKGPRGERGISGAIGP-PGPRG 1616
Score = 30.8 bits (68), Expect = 0.79
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG------PGAG 94
PG G +G P G R + + D G P GP+ PP +G PG
Sbjct: 1588 PGPAGGPGAKG--PRGERGISGAIGPPGPRGDIG----PPGPQGPPGPQGPNGLSIPGEQ 1641
Query: 95 GRRGKSSAQSSAPPAPGARGVYVLP 119
GR+G + P PG G LP
Sbjct: 1642 GRQG-MKGDAGEPGLPGRTGTPGLP 1665
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 34.3 bits (77), Expect = 0.072
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG-PGAGGRRGK 99
PG G+A RG+P G R P G + PP RG PG G RG
Sbjct: 2947 PGPPGSAGARGEPGPGGRPGFPGTP---------------GMQGPPGERGLPGEKGERGT 2991
Query: 100 -SSAQSSAPPAPGARG 114
SS P PG +G
Sbjct: 2992 GSSGPRGLPGPPGPQG 3007
Score = 32.0 bits (71), Expect = 0.36
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 40 EPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRG- 98
EPG GG G P R +P + +R G +GP+ P GP R G
Sbjct: 2958 EPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTG----SSGPRGLPGPPGPQGESRTGP 3013
Query: 99 KSSAQSSAPPAPGAR 113
S S PP P R
Sbjct: 3014 PGSTGSRGPPGPPGR 3028
Score = 31.2 bits (69), Expect = 0.61
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 81 GPKDPP-PGRGPGAGGRRGKSSAQSSAPPAPGARG 114
GP PP P GPGA G RG+ + P PG RG
Sbjct: 2747 GPPGPPGPAGGPGAKGPRGERGISGAIGP-PGPRG 2780
Score = 30.8 bits (68), Expect = 0.79
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 41 PGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRG------PGAG 94
PG G +G P G R + + D G P GP+ PP +G PG
Sbjct: 2752 PGPAGGPGAKG--PRGERGISGAIGPPGPRGDIG----PPGPQGPPGPQGPNGLSIPGEQ 2805
Query: 95 GRRGKSSAQSSAPPAPGARGVYVLP 119
GR+G + P PG G LP
Sbjct: 2806 GRQG-MKGDAGEPGLPGRTGTPGLP 2829
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 34.3 bits (77), Expect = 0.072
Identities = 51/191 (26%), Positives = 70/191 (36%), Gaps = 32/191 (16%)
Query: 38 SEEPGTGGAASRRGQP--------PAGARDSGRDVPLTQY---QRDFGLWTT-PAGPKDP 85
S PG G + P PA + +SG P Q G TT P P
Sbjct: 335 STTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQ 394
Query: 86 PPGRGPGAGGRRGKSSAQSSAPPAPGARG------VYVLPIGDADAAAAVTTSYRQEFQA 139
P G G G G G SS+ +S+ A G G Y + D+ A A+++S +
Sbjct: 395 PSGGGGGGSGGGGSSSSSNSS--AGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNASS 452
Query: 140 WTGVKPS------RSTKTKPARVITTHTSG-----WDSSPGAGFQVP-EVRKKFTPNPSA 187
PS ST +P+ T G ++S G VP V +P PS
Sbjct: 453 QALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSF 512
Query: 188 IFQASAPRILN 198
+A +LN
Sbjct: 513 SDAKAAGALLN 523
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 33.9 bits (76), Expect = 0.094
Identities = 33/88 (37%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 41 PGTGGAASRRGQP-PAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGK 99
PG G RRG P P G SGRD Y GL P P PG G RG
Sbjct: 123 PGRRGKPGRRGDPGPPG--QSGRD----GYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGD 176
Query: 100 SSAQSSAPPA-----PGARGVYVLPIGD 122
+A P PGARG P GD
Sbjct: 177 QGQDGAAGPPGPPGPPGARG----PPGD 200
Score = 32.3 bits (72), Expect = 0.27
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 40 EPGTGGAASRRGQPPAGARDSGRDVPLTQYQR----DFGLW--------TTPAGPKDPPP 87
+PG G + R G P D +P + ++ DFG P GP PP
Sbjct: 134 DPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPGPPGPPG 193
Query: 88 GRGP-GAGGRRGKSSAQSSAPP--APGARG 114
RGP G G+ G AQ A P PG G
Sbjct: 194 ARGPPGDTGKDGPRGAQGPAGPKGEPGQDG 223
Score = 30.4 bits (67), Expect = 1.0
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 40 EPGTGGAASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGK 99
EPG G +G PP + G + + D G TP+ P P P PG+ G RG+
Sbjct: 218 EPGQDGEMGPKG-PPGPKGEPG----VPGKKGDDG---TPSQPGPPGPKGEPGSMGPRGE 269
Query: 100 SSAQSSAPP--APGARG 114
+ + P PG RG
Sbjct: 270 NGVDGAPGPKGEPGHRG 286
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 33.5 bits (75), Expect = 0.12
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 42 GTGGAASRRGQPPAGARD-SGRDVPLTQYQR-------DFGL---WTTPAGPKDPPPGRG 90
GT G R G PP AR SG+ P + R D GL W+ PA P PP
Sbjct: 29 GTAGQP-RLGPPPRRARRFSGKAEPRPRSSRLSRRSSVDLGLLSSWSLPASPAPDPPDPP 87
Query: 91 PGAGGRRGKSSAQSSAPPAPG 111
AG +S SS P G
Sbjct: 88 DSAGPGPARSPPPSSKEPPEG 108
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 33.5 bits (75), Expect = 0.12
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 79 PAGPKDPPP---------GRGPGAGGRRGKSSAQSSAPP---APGARGVYVLPIGDADAA 126
P P PP G G GRR ++ + PP GARG P+G ++
Sbjct: 55 PTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLRPPWEVRGGARGPCSAPVGSRASS 114
Query: 127 AAVTTSYRQEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQVPEVR 178
S +P+R T T R I + + + G+G +VP+VR
Sbjct: 115 GPGLPSA-------AAARPARKTLTCQPRSIESPATASSAGCGSGPRVPQVR 159
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 33.5 bits (75), Expect = 0.12
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 47 ASRRGQPPAGARDSGRDVPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGRRGKSSAQSSA 106
A R PP G SG + R LW+ + P PGRGP A G G+S A
Sbjct: 246 AGVRLPPPPGCGGSG-----ARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRA---P 297
Query: 107 PPA 109
PPA
Sbjct: 298 PPA 300
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.5 bits (75), Expect = 0.12
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 33/156 (21%)
Query: 38 SEEPGTGGAASRRGQPPAGARDSGRD-VPLTQYQRDFGLWTTPAGPKDPPPGRGPGAGGR 96
++E G GA S+ + P GA +G PL + + P P PPP GP +
Sbjct: 32 ADEEGAAGAGSKLWRRPRGAVSAGAPGSPL------YRVSAPPPAPPPPPPPGGP-SRSE 84
Query: 97 RGKSSAQSSAPPAPGARGVYVLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTKPARV 156
R ++ + A +PG G G A +A + S S + + PAR
Sbjct: 85 RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS---------AAALSAAQRGGPARA 135
Query: 157 ITTHTSGWDSSPGAGFQVPEVRKKFTPNPSAIFQAS 192
QVP + F+P P++ +AS
Sbjct: 136 ----------------QVPPALRTFSPGPASPPRAS 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,719,167
Number of Sequences: 37866
Number of extensions: 646613
Number of successful extensions: 4725
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 425
Number of HSP's that attempted gapping in prelim test: 3912
Number of HSP's gapped (non-prelim): 1108
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.