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Search of human proteins with 51702521
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
(443 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 938 0.0
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 451 e-127
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 391 e-109
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 360 1e-99
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 215 7e-56
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 203 3e-52
gi|148664218 POU transcription factor [Homo sapiens] 202 4e-52
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 188 1e-47
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 187 2e-47
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 187 2e-47
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 182 5e-46
gi|4505955 pituitary specific transcription factor 1 isoform alp... 182 7e-46
gi|170650730 pituitary specific transcription factor 1 isoform b... 181 1e-45
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 159 5e-39
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 158 8e-39
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 141 1e-33
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 135 6e-32
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 104 1e-22
gi|8923842 forkhead box J2 [Homo sapiens] 67 2e-11
gi|171543895 ataxin 2 [Homo sapiens] 65 9e-11
gi|55750053 atrophin-1 [Homo sapiens] 65 2e-10
gi|55750041 atrophin-1 [Homo sapiens] 65 2e-10
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 63 6e-10
gi|55956910 meningioma 1 [Homo sapiens] 61 2e-09
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 60 3e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 59 7e-09
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 59 9e-09
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 59 9e-09
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 59 9e-09
gi|122937189 family with sequence similarity 155, member A [Homo... 59 1e-08
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 938 bits (2425), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ 60
MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ
Sbjct: 1 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ 60
Query: 61 WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG 120
WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG
Sbjct: 61 WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG 120
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPS 180
PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPS
Sbjct: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPS 180
Query: 181 MGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPP 240
MGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPP
Sbjct: 181 MGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPP 240
Query: 241 PPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG 300
PPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG
Sbjct: 241 PPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG 300
Query: 301 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTS 360
NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTS
Sbjct: 301 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTS 360
Query: 361 IEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLP 420
IEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLP
Sbjct: 361 IEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLP 420
Query: 421 GAEDVYGGSRDTPPHHGVQTPVQ 443
GAEDVYGGSRDTPPHHGVQTPVQ
Sbjct: 421 GAEDVYGGSRDTPPHHGVQTPVQ 443
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 451 bits (1159), Expect = e-127
Identities = 289/530 (54%), Positives = 311/530 (58%), Gaps = 117/530 (22%)
Query: 1 MATAASNHY---SLLTSSASIVHAEPPG---------------------GMQQGA----- 31
MATAASN Y + L ++ SIVH++ G GMQ G+
Sbjct: 1 MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
Query: 32 GGYREAQS---LVQGDY--GALQSN--GHPLSHAHQWITALSHGGGGGGGGGGGGGGGGG 84
G YR S +VQ D+ GA+ ++ GH LSHAHQW+TAL H
Sbjct: 61 GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEAS- 119
Query: 85 GGGGDGSPWSTSPLG------QPDIKPSVVVQ----QGGRG-DELHGPGALQQQHQQQQQ 133
SPWS S +G QP P Q +GG G D+LH AL +
Sbjct: 120 ------SPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRG----- 168
Query: 134 QQQQQQQQQQQQQQQQRPPHLVHHAANHHPG-PGAW----------RSAAAAAHLPPSMG 182
PPHL H G PG W +AAAAAHLP G
Sbjct: 169 -----------------PPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAG 211
Query: 183 ASNG---GLLYSQPS-FTVNGML-----------GAGGQPAGLHHHGLRDAHDEPHHADH 227
LLYSQP FTVNGML GAGG L H GL D P A+H
Sbjct: 212 GQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRG-DTPELAEH 270
Query: 228 HPHPHSHPHQQPPPPPPPQGPPGHPGA---------HHDPHSDEDTPTSDDLEQFAKQFK 278
H H H H H PP P QGPP H G HDPHSDEDTPTSDDLEQFAKQFK
Sbjct: 271 HHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFK 330
Query: 279 QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS 338
QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS
Sbjct: 331 QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS 390
Query: 339 SGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVV 398
+GSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEIT+LADSLQLEKEVV
Sbjct: 391 TGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVV 450
Query: 399 RVWFCNRRQKEKRMTPPGGTLPGAEDVYGG----SRDT-PPHHGVQTPVQ 443
RVWFCNRRQKEKRMTPPG +DVY S DT PPHHG+QT VQ
Sbjct: 451 RVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHHGLQTSVQ 500
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 391 bits (1004), Expect = e-109
Identities = 246/445 (55%), Positives = 273/445 (61%), Gaps = 96/445 (21%)
Query: 1 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDY-GALQSNGHPLSHAH 59
MATAASN YS+L SS S+VHA+ GMQQG+ +R Q L+Q DY + SNGHPL H
Sbjct: 1 MATAASNPYSIL-SSTSLVHADS-AGMQQGSP-FRNPQKLLQSDYLQGVPSNGHPLGH-- 55
Query: 60 QWITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWS----TSPLGQPDIKPSVVVQQGGRG 115
W+T+LS DG PWS TSPL Q D+KP GR
Sbjct: 56 HWVTSLS----------------------DGGPWSSTLATSPLDQQDVKP-------GRE 86
Query: 116 DELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAA 175
D G R PH+ HH+ H P AW ++ A
Sbjct: 87 DLQLGAII------------------------HHRSPHVAHHSP-HTNHPNAWGASPAPN 121
Query: 176 HLPPSMGASNGGL-LYSQPSFTVNGMLGAGG---QPAGLHHHGLRDAHDEPHHADHHPHP 231
PS+ +S L +YSQP FTV+GML GG PA L
Sbjct: 122 ---PSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSL---------------- 162
Query: 232 HSHPHQQPPPPPPPQGPPGHPGAHH-DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQAD 290
HP + PP G G+HH HSDE+TPTSD+LEQFAKQFKQRRIKLGFTQAD
Sbjct: 163 --HPVLREPPDH------GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQAD 214
Query: 291 VGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAA 350
VGLALGTLYGNVFSQTTICRFE LQLSFKNMCKLKPLLNKWLEEADSS+GSPTSIDKIAA
Sbjct: 215 VGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAA 274
Query: 351 QGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 410
QGRKRKKRTSIEVSVKG LE+HFLKCPKP+AQEI+SLADSLQLEKEVVRVWFCNRRQKEK
Sbjct: 275 QGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK 334
Query: 411 RMTPPGGTLPGAEDVYGGSRDTPPH 435
RMTPPG P + DT H
Sbjct: 335 RMTPPGDQQPHEVYSHTVKTDTSCH 359
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 360 bits (924), Expect = 1e-99
Identities = 228/436 (52%), Positives = 248/436 (56%), Gaps = 89/436 (20%)
Query: 34 YREAQSLVQGDY-GALQSNGHPLSHAH-QWITALSHGGGGGGGGGGGGGGGGGGGGGDGS 91
YRE Q L+ ++ GA GHP+ AH QW+ GGGGGG GG G GG G+
Sbjct: 46 YREVQKLMHHEWLGA--GAGHPVGLAHPQWLPT---GGGGGGDWAGGPHLEHGKAGGGGT 100
Query: 92 PWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRP 151
GR D+ G G +
Sbjct: 101 ---------------------GRADDGGGGGGFHAR------------------------ 115
Query: 152 PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGL---------LYSQPSFT------ 196
LVH A H AW + A HL P+M S G LY+Q ++
Sbjct: 116 --LVHQGAAH--AGAAWAQGSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGGGGGG 171
Query: 197 VNGMLGAGGQPAG--LHHHGLRDAHDE------PHHADHHPHPHSHPHQQPPPPPPPQGP 248
+ GML AGG AG LHH D H+ P H H H H H H
Sbjct: 172 LAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHLH 231
Query: 249 PGHPGAHHD--PHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQT 306
PG G HSDED P+SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQT
Sbjct: 232 PGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQT 291
Query: 307 TICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVK 366
TICRFEALQLSFKNMCKLKPLLNKWLEE DSSSGSPT++DKIAAQGRKRKKRTSIEV VK
Sbjct: 292 TICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVK 351
Query: 367 GALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGT-LPGAEDV 425
GALESHFLKCPKPSA EIT LADSLQLEKEVVRVWFCNRRQKEKRMTP G P +DV
Sbjct: 352 GALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDV 411
Query: 426 Y-------GGSRDTPP 434
Y GG +PP
Sbjct: 412 YAPGELGPGGGGASPP 427
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 215 bits (547), Expect = 7e-56
Identities = 145/312 (46%), Positives = 172/312 (55%), Gaps = 49/312 (15%)
Query: 124 LQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPG-------PGAWRSAAAAAH 176
L Q Q Q QQ QQ QQQ QQ LVH N P P + A +
Sbjct: 166 LSQPIQIAQDLQQLQQLQQQNLNLQQFV--LVHPTTNLQPAQFIISQTPQGQQGLLQAQN 223
Query: 177 LPPSMGA-SNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHP 235
L + S LL SQPS T+ QPA P + P
Sbjct: 224 LLTQLPQQSQANLLQSQPSITLTS------QPA------------TPTRTIAATPIQTLP 265
Query: 236 HQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLAL 295
Q P D S E+ ++LEQFAK FKQRRIKLGFTQ DVGLA+
Sbjct: 266 QSQSTPK------------RIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAM 313
Query: 296 GTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEA-----DSSSGSPTSIDKIAA 350
G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A DSS SP++++
Sbjct: 314 GKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGI 373
Query: 351 QG--RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQK 408
+G R+RKKRTSIE +++ ALE FL+ KP+++EIT +AD L +EKEV+RVWFCNRRQK
Sbjct: 374 EGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 433
Query: 409 EKRMTPP--GGT 418
EKR+ PP GGT
Sbjct: 434 EKRINPPSSGGT 445
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 203 bits (516), Expect = 3e-52
Identities = 147/358 (41%), Positives = 174/358 (48%), Gaps = 58/358 (16%)
Query: 91 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
SP+S SP G P K G P Q H Q Q Q QQ +
Sbjct: 50 SPFSVSPTG-PSTKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQ 108
Query: 151 PPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQP-AG 209
LV +H P + A P + N L+ P T +L + QP AG
Sbjct: 109 LQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPN---LFQLPQQTQGALLTS--QPRAG 163
Query: 210 LHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDD 269
L P PP PP HP E+ ++
Sbjct: 164 L----------------------------PTQPPKCLEPPSHP---------EEPSDLEE 186
Query: 270 LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLN 329
LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL
Sbjct: 187 LEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLE 246
Query: 330 KWLEEA-----DSSSGSPTSIDKIA-----AQGRKRKKRTSIEVSVKGALESHFLKCPKP 379
KWL +A DSS SP + + GR+RKKRTSIE +V+ ALE FL KP
Sbjct: 247 KWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKP 306
Query: 380 SAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTP----PGGTLPGAEDVYGGSRDTP 433
+++EI +A+ L +EKEV+RVWFCNRRQKEKR+ P P PG Y TP
Sbjct: 307 TSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPHMVTP 364
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 202 bits (515), Expect = 4e-52
Identities = 121/247 (48%), Positives = 148/247 (59%), Gaps = 37/247 (14%)
Query: 221 EPHHADHHPHPHSHPHQQPPPPPPPQGP---------PGHPGAHHDPHSDE--------- 262
+P P+ P QQ P GP PG PG+ +PH +
Sbjct: 116 QPGQQGLQPNLLPFPQQQSGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKH 175
Query: 263 -------DTPTS-DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEAL 314
D P+ ++LE+FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL
Sbjct: 176 LPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 235
Query: 315 QLSFKNMCKLKPLLNKWLEEADSSSGSPT--------SIDKIAAQGRKRKKRTSIEVSVK 366
LSFKNMCKLKPLL KWL +A+SS P+ S+ ++ GRKRKKRTSIE +++
Sbjct: 236 NLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVF--GRKRKKRTSIETNIR 293
Query: 367 GALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVY 426
LE F PKPS++EI+ +A+ L +EKEVVRVWFCNRRQKEKR+ P T P VY
Sbjct: 294 LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVAT-PIKPPVY 352
Query: 427 GGSRDTP 433
+P
Sbjct: 353 NSRLVSP 359
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 188 bits (477), Expect = 1e-47
Identities = 145/418 (34%), Positives = 189/418 (45%), Gaps = 72/418 (17%)
Query: 41 VQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQ 100
V+ Y AL S P S A +A S GGGGGGGGGGGGGGG S S+S
Sbjct: 22 VEPKYSALHSTS-PGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSG--- 77
Query: 101 PDIKPSVVVQQGGRGDE------LHGP-----GALQQQHQQQQQQQQQQQQQQQQQQQQQ 149
GG G E L P G L + + + Q +
Sbjct: 78 ---------SSGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDIVSQSKSHHH 128
Query: 150 RPPH-------LVHHAANHHPGPGAWRSAAAAAHLPPSMGASN----------------- 185
PPH +H N P A S++ P ++ ++
Sbjct: 129 HPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQAL 188
Query: 186 -GGLL-YSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPP 243
G LL + P + M G G H A P H H+H
Sbjct: 189 EGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAH--------- 239
Query: 244 PPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL----Y 299
G P H G D +D DLE FA++FKQRRIKLG TQADVG AL L
Sbjct: 240 ---GLPSHMGCMSDVDADPR-----DLEAFAERFKQRRIKLGVTQADVGSALANLKIPGV 291
Query: 300 GNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRT 359
G++ SQ+TICRFE+L LS NM LKP+L WLEEA+ S + ++ K++KRT
Sbjct: 292 GSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRT 350
Query: 360 SIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGG 417
SI K +LE++F P+PS+++I ++A+ L L+K VVRVWFCN+RQK+KRM G
Sbjct: 351 SIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAG 408
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 187 bits (475), Expect = 2e-47
Identities = 94/156 (60%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 257 DPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 315
+P +D +LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQTTICRFEALQ
Sbjct: 132 NPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQ 191
Query: 316 LSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLK 375
LSFKNMCKL+PLL KW+EEAD++ +++KRTSIE V+G LE+ FL+
Sbjct: 192 LSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQ 251
Query: 376 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKR 411
CPKP+ Q+I+ +A L LEK+VVRVWFCNRRQK KR
Sbjct: 252 CPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 287
Score = 29.3 bits (64), Expect = 7.5
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 74 GGGGGGGGGGGGGGGDGSPWST--SPLGQPDIKPSVVVQQGGRGDELHG 120
GGGG G GG G D W + P G P I P V G G E+ G
Sbjct: 16 GGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGV-----GPGSEVWG 59
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 187 bits (474), Expect = 2e-47
Identities = 92/143 (64%), Positives = 111/143 (77%)
Query: 269 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 328
+LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQTTICRFEALQLSFKNMCKL+PLL
Sbjct: 50 ELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLL 109
Query: 329 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 388
KW+EEAD++ +++KRTSIE V+G LE+ FL+CPKP+ Q+I+ +A
Sbjct: 110 QKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIA 169
Query: 389 DSLQLEKEVVRVWFCNRRQKEKR 411
L LEK+VVRVWFCNRRQK KR
Sbjct: 170 QQLGLEKDVVRVWFCNRRQKGKR 192
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 182 bits (462), Expect = 5e-46
Identities = 112/250 (44%), Positives = 137/250 (54%), Gaps = 13/250 (5%)
Query: 163 PGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEP 222
PG G PP GG+ Y P +G G P G GL + E
Sbjct: 49 PGVGPGSEVWGIPPCPPPYELC-GGMAYCGPQ------VGVGLVPQG----GLETSQPES 97
Query: 223 HHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPT-SDDLEQFAKQFKQRR 281
+ +P PP +P +D +LEQFAK KQ+R
Sbjct: 98 EAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKR 157
Query: 282 IKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGS 341
I LG+TQADVGL LG L+G VFSQ TICRFEALQLSFKNMCKL+PLL KW+EEAD++
Sbjct: 158 ITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENL 217
Query: 342 PTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVW 401
+++KRTSIE V+G LE+ FL+CPKP+ Q I+ +A L LEK+VVRVW
Sbjct: 218 QEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVW 276
Query: 402 FCNRRQKEKR 411
FCNRRQK KR
Sbjct: 277 FCNRRQKGKR 286
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 182 bits (461), Expect = 7e-46
Identities = 116/249 (46%), Positives = 145/249 (58%), Gaps = 14/249 (5%)
Query: 172 AAAAHLPPSMGASN-----GGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHAD 226
+AA LP S A+N GL YS PS G AG L + P H
Sbjct: 30 SAAECLPVSNHATNVMSTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCL---YKFPDHTL 86
Query: 227 HHPHPHSHPH---QQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIK 283
H P H + P Q +P D D+P +LE+FA +FK RRIK
Sbjct: 87 SHGFPPIHQPLLAEDPTAADFKQELRRKSKLVEEP-IDMDSPEIRELEKFANEFKVRRIK 145
Query: 284 LGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPT 343
LG+TQ +VG AL ++G+ FSQTTICRFE LQLSFKN CKLK +L+KWLEEA+
Sbjct: 146 LGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYN 205
Query: 344 SIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFC 403
+K+ A RKRK+RT+I ++ K ALE HF + KPS+QEI +A+ L LEKEVVRVWFC
Sbjct: 206 --EKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFC 263
Query: 404 NRRQKEKRM 412
NRRQ+EKR+
Sbjct: 264 NRRQREKRV 272
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 181 bits (459), Expect = 1e-45
Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 2/152 (1%)
Query: 261 DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN 320
D D+P +LE+FA +FK RRIKLG+TQ +VG AL ++G+ FSQTTICRFE LQLSFKN
Sbjct: 149 DMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKN 208
Query: 321 MCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 380
CKLK +L+KWLEEA+ +K+ A RKRK+RT+I ++ K ALE HF + KPS
Sbjct: 209 ACKLKAILSKWLEEAEQVGALYN--EKVGANERKRKRRTTISIAAKDALERHFGEQNKPS 266
Query: 381 AQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 412
+QEI +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 267 SQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 298
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 159 bits (402), Expect = 5e-39
Identities = 100/246 (40%), Positives = 135/246 (54%), Gaps = 30/246 (12%)
Query: 176 HLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPH--- 232
H G L + P+ +V+G+ G H + A PHH H H
Sbjct: 108 HHAVHQGLEGDLLEHISPTLSVSGL--------GAPEHSVMPAQIHPHHLGAMGHLHQAM 159
Query: 233 --SHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQAD 290
SHPH P P D SD +LE FA++FKQRRIKLG TQAD
Sbjct: 160 GMSHPHTVAPHS-------AMPACLSDVESDPR-----ELEAFAERFKQRRIKLGVTQAD 207
Query: 291 VGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSID 346
VG AL L G++ SQ+TICRFE+L LS NM LKP+L WLEEA+++ S
Sbjct: 208 VGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKP 266
Query: 347 KIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRR 406
++ +++KRTSI K +LE++F P+PS+++I ++A+ L L+K VVRVWFCN+R
Sbjct: 267 ELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQR 326
Query: 407 QKEKRM 412
QK+KRM
Sbjct: 327 QKQKRM 332
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 158 bits (400), Expect = 8e-39
Identities = 111/292 (38%), Positives = 140/292 (47%), Gaps = 63/292 (21%)
Query: 162 HPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDE 221
H GPG G GG G G GG P G GL
Sbjct: 144 HDGPGGGGGPGGGGGPGGGPGGGGGG-----------GPGGGGGGPGG----GLLGGSAH 188
Query: 222 PHHADHHPHPHSHPHQQPPPPPPPQGPPG---HPG-----AHHDPHS------------- 260
PH PH HS H P P HPG AHH +
Sbjct: 189 PH-----PHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
Query: 261 ----------------DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL----YG 300
D DT + LE FA++FKQRRIKLG TQADVG AL L G
Sbjct: 244 SAAAAVVGAAGLASICDSDTDPRE-LEAFAERFKQRRIKLGVTQADVGSALANLKIPGVG 302
Query: 301 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTS 360
++ SQ+TICRFE+L LS NM LKP+L WLEEA+ + + ++ G K++KRTS
Sbjct: 303 SL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTS 361
Query: 361 IEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 412
I K +LE++F P+PS+++I ++A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 362 IAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/117 (34%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 69 GGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQH 128
GGGGG GGGGG GGG GGGG G P GG G L G A H
Sbjct: 148 GGGGGPGGGGGPGGGPGGGGGGGPGGGG---------------GGPGGGLLGGSAHPHPH 192
Query: 129 QQQQQQQQQQQQQQQQQQQQQRP-PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGAS 184
P P LV AA+H G A +AAAA + + A+
Sbjct: 193 MHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHH--GAAAAAAAAAAGQVAAASAAA 247
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 68 GGGGGGGGGGGGGGGGGGGGGDGSP 92
GGGGG GGG GGGGGGG GGG G P
Sbjct: 154 GGGGGPGGGPGGGGGGGPGGGGGGP 178
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 141 bits (356), Expect = 1e-33
Identities = 70/145 (48%), Positives = 100/145 (68%)
Query: 269 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 328
+L+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFEA QLS NM KL+PLL
Sbjct: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
Query: 329 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 388
KWL+E ++ + ++ Q + +R S E + +LE F +CPKP+ Q+I+ +A
Sbjct: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
Query: 389 DSLQLEKEVVRVWFCNRRQKEKRMT 413
LQL+K+VVRVWF NR + R T
Sbjct: 245 GCLQLQKDVVRVWFYNRSKMGSRPT 269
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 135 bits (341), Expect = 6e-32
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 256 HDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 315
H P DED +++ +FAK FK RR+ LG TQ VG AL G +SQ+ ICRFE L
Sbjct: 133 HTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLD 192
Query: 316 LSFKNMCKLKPLLNKWLEEAD--SSSGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESH 372
++ K+ KLKP+L KWL EA+ + G ++ + + +KRK+RTS AL ++
Sbjct: 193 ITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAY 252
Query: 373 FLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 410
F K P P+ QEIT +A L ++EVVRVWFCNRRQ K
Sbjct: 253 FEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 104 bits (260), Expect = 1e-22
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 39/182 (21%)
Query: 268 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR----------------- 310
+++ +FAK FK RR+ LG TQ VG AL G +SQ+ ICR
Sbjct: 482 EEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQEN 541
Query: 311 -------------------FEALQLSFKNMCKLKPLLNKWLEEADSS--SGSPTSIDKIA 349
FE L ++ K+ K+KP+L +W+ EA++ +G + I
Sbjct: 542 TIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFIG 601
Query: 350 AQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQK 408
++ +KRK+RTS L +HF K PS QE+T +A+ L ++EVVRVWFCN+RQ
Sbjct: 602 SEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQA 661
Query: 409 EK 410
K
Sbjct: 662 LK 663
Score = 48.9 bits (115), Expect = 9e-06
Identities = 43/127 (33%), Positives = 45/127 (35%), Gaps = 27/127 (21%)
Query: 131 QQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLY 190
Q QQ Q Q QQQQQQQQQQ PP + N HP P P + S L
Sbjct: 178 QLQQLQLQLQQQQQQQQQQPPP-----STNQHPQPA-----------PQAPSQSQQQPLQ 221
Query: 191 SQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPP----PPPPQ 246
P A QP P H PH HS QP P PPQ
Sbjct: 222 PTPP---QQPPPASQQPPA----PTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQ 274
Query: 247 GPPGHPG 253
P PG
Sbjct: 275 KPSQSPG 281
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 67.4 bits (163), Expect = 2e-11
Identities = 64/228 (28%), Positives = 79/228 (34%), Gaps = 46/228 (20%)
Query: 47 ALQSNGHPLSHAHQWITALSHGGGGGGGGGGG-GGGGGGGGGGDGSP------------- 92
+L G+P + S+ G G GG G G +G P
Sbjct: 184 SLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGASGRESAEGPPPLYNTNHDFKFSY 243
Query: 93 ---------WSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQ 143
WS L + ++ S Q G L + QQQQ QQQQQ
Sbjct: 244 SEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSNNYYMYQQQQPPPPQQQQQ 303
Query: 144 QQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGA 203
QQQ Q PP P G +A PP S +G
Sbjct: 304 QQQPPQPPPQQSQPQQQQAPAQGP----SAVGGAPPLHTPST------------DGCTPP 347
Query: 204 GGQPAGLHHHG---LRDAHDEP-HHADHHP---HPHSHPHQQPPPPPP 244
GG+ AG +G + H P H +HP HPHSHP QQPPPP P
Sbjct: 348 GGKQAGAEGYGPPPVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQP 395
Score = 29.6 bits (65), Expect = 5.7
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 14/51 (27%)
Query: 229 PHPHSHPHQQPPPPPPP------------QGPPGHPGAH--HDPHSDEDTP 265
P P QQ PP PPP QGP GA H P +D TP
Sbjct: 296 PPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTP 346
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 65.5 bits (158), Expect = 9e-11
Identities = 79/244 (32%), Positives = 96/244 (39%), Gaps = 45/244 (18%)
Query: 2 ATAASNHYSLLTSSASIVHAEPPG-------GMQQGAGGYREAQSLVQGDYGALQSNGHP 54
A AA ++ T S A PG + G GG A G P
Sbjct: 4 AAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGPGPP 63
Query: 55 LSHAHQWITALSHGGGGGGGGGGGGGG-----GGGG---------------GGGDGSPWS 94
S +A G G GGG G G GG G +P
Sbjct: 64 PSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAAPTR 123
Query: 95 TSPLGQPDIKP--SVVVQQGGRG------DELHGP--GALQQQHQQQQQQQQQQQQQQQQ 144
SPLG P V + + G + ++GP +L+ Q QQQQQQQQQQQQQQQQ
Sbjct: 124 ASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQQQQ 183
Query: 145 QQQQQRPPHLVHHAAN-HHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGA 203
QQQQQ PP AAN PG ++ AAA P S S+ + PS V G
Sbjct: 184 QQQQQPPP----AAANVRKPGGSGLLASPAAAPSPSSSSVSSSSA--TAPSSVVAATSG- 236
Query: 204 GGQP 207
GG+P
Sbjct: 237 GGRP 240
Score = 35.0 bits (79), Expect = 0.14
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 22/148 (14%)
Query: 130 QQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPG-------AWRSAAAAAHLPPSMG 182
+ + ++++ Q+ +R H ++ N + PG +W S + P MG
Sbjct: 461 ENDDRSEEEKYTAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNS---PRMG 517
Query: 183 ASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPH-SHPHQQPP- 240
G + S+ + + G + + G+ P + P + S P+ PP
Sbjct: 518 QPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPR 577
Query: 241 ----------PPPPPQGPPGHPGAHHDP 258
PP P PP HP AH P
Sbjct: 578 AATPTRPPSRPPSRPSRPPSHPSAHGSP 605
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/164 (25%), Positives = 49/164 (29%), Gaps = 26/164 (15%)
Query: 109 VQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAW 168
+ G + P A H Q QQQ Q P HH
Sbjct: 1124 ISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHP---APSPVQHHQ----- 1175
Query: 169 RSAAAAAHLPPSMGAS---NGGLLYSQPSFTV--------NGMLGAGGQPAGLHHHGLRD 217
AA A HL S + GL + PS T N A +H ++
Sbjct: 1176 HQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQP 1235
Query: 218 AHDEPHHADHHPHPH-------SHPHQQPPPPPPPQGPPGHPGA 254
A+ P H H P H SHP P PPG P A
Sbjct: 1236 AYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQA 1279
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 224 HADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDP 258
H + HPH+ PH QP P Q H G+H P
Sbjct: 1135 HPNATLHPHT-PHPQPSATPTGQQQSQHGGSHPAP 1168
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 64.7 bits (156), Expect = 2e-10
Identities = 53/179 (29%), Positives = 67/179 (37%), Gaps = 40/179 (22%)
Query: 93 WSTSP---------LGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQ 143
WS P L + P G H P + H QQQQQQQQQQQQQQ
Sbjct: 438 WSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQ 497
Query: 144 QQQQQQRP----------PHLVHHAANHHPGPGAWRSAAAA--------AHLPPSMGASN 185
QQQQQ PH + ++HH P A + + AHLPP
Sbjct: 498 QQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP----- 552
Query: 186 GGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
+SQ S++ G G P + + + + HP P P P P PP
Sbjct: 553 ----HSQVSYS---QAGPNGPPVSSSSNS-SSSTSQGSYPCSHPSPSQGPQGAPYPFPP 603
Score = 34.7 bits (78), Expect = 0.18
Identities = 51/186 (27%), Positives = 57/186 (30%), Gaps = 53/186 (28%)
Query: 72 GGGGGGGGGGGGGGGGGDGSPWSTSPL--------GQPDIKPSVVVQQGGRGDELHGPGA 123
G GGG GG GG P T+P+ G P KP GG + P A
Sbjct: 234 GPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGG-----NLPSA 288
Query: 124 LQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGA 183
PP H + P P A R A+ PP +GA
Sbjct: 289 --------------------------PPPANFPHVTPNLPPPPALRPLNNASASPPGLGA 322
Query: 184 SNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPP 243
L PS G G GG P G P A P PHS P P
Sbjct: 323 Q--PLPGHLPSPHAMGQ-GMGGLPPG--------PEKGPTLA---PSPHSLPPASSSAPA 368
Query: 244 PPQGPP 249
PP P
Sbjct: 369 PPMRFP 374
Score = 33.9 bits (76), Expect = 0.30
Identities = 34/155 (21%), Positives = 47/155 (30%), Gaps = 29/155 (18%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANH--HPGPGAWRSAAAAAHLP 178
P +L +Q + Q Q Q PP AN HPGP P
Sbjct: 415 PTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGP-----------FP 463
Query: 179 PSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQ 238
PS GA + + P + + HHH + + H
Sbjct: 464 PSTGAQST----AHPPVSTH------------HHHHQQQQQQQQQQQQQQQQQQQHHGNS 507
Query: 239 PPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQF 273
PPPP P G+ H H +P+ L +
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPY 542
Score = 31.2 bits (69), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 231 PHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPT 266
P+ P PP P PP P P A +PH TPT
Sbjct: 158 PYHPPPLFPPSPQPPDSTPRQPEASFEPHPSV-TPT 192
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 64.7 bits (156), Expect = 2e-10
Identities = 53/179 (29%), Positives = 67/179 (37%), Gaps = 40/179 (22%)
Query: 93 WSTSP---------LGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQ 143
WS P L + P G H P + H QQQQQQQQQQQQQQ
Sbjct: 438 WSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQ 497
Query: 144 QQQQQQRP----------PHLVHHAANHHPGPGAWRSAAAA--------AHLPPSMGASN 185
QQQQQ PH + ++HH P A + + AHLPP
Sbjct: 498 QQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP----- 552
Query: 186 GGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
+SQ S++ G G P + + + + HP P P P P PP
Sbjct: 553 ----HSQVSYS---QAGPNGPPVSSSSNS-SSSTSQGSYPCSHPSPSQGPQGAPYPFPP 603
Score = 34.7 bits (78), Expect = 0.18
Identities = 51/186 (27%), Positives = 57/186 (30%), Gaps = 53/186 (28%)
Query: 72 GGGGGGGGGGGGGGGGGDGSPWSTSPL--------GQPDIKPSVVVQQGGRGDELHGPGA 123
G GGG GG GG P T+P+ G P KP GG + P A
Sbjct: 234 GPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGG-----NLPSA 288
Query: 124 LQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGA 183
PP H + P P A R A+ PP +GA
Sbjct: 289 --------------------------PPPANFPHVTPNLPPPPALRPLNNASASPPGLGA 322
Query: 184 SNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPP 243
L PS G G GG P G P A P PHS P P
Sbjct: 323 Q--PLPGHLPSPHAMGQ-GMGGLPPG--------PEKGPTLA---PSPHSLPPASSSAPA 368
Query: 244 PPQGPP 249
PP P
Sbjct: 369 PPMRFP 374
Score = 33.9 bits (76), Expect = 0.30
Identities = 34/155 (21%), Positives = 47/155 (30%), Gaps = 29/155 (18%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANH--HPGPGAWRSAAAAAHLP 178
P +L +Q + Q Q Q PP AN HPGP P
Sbjct: 415 PTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGP-----------FP 463
Query: 179 PSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQ 238
PS GA + + P + + HHH + + H
Sbjct: 464 PSTGAQST----AHPPVSTH------------HHHHQQQQQQQQQQQQQQQQQQQHHGNS 507
Query: 239 PPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQF 273
PPPP P G+ H H +P+ L +
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPY 542
Score = 31.2 bits (69), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 231 PHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPT 266
P+ P PP P PP P P A +PH TPT
Sbjct: 158 PYHPPPLFPPSPQPPDSTPRQPEASFEPHPSV-TPT 192
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 62.8 bits (151), Expect = 6e-10
Identities = 73/252 (28%), Positives = 96/252 (38%), Gaps = 53/252 (21%)
Query: 69 GGGGGGGGGGGGGGGGGGGGDGSP-WSTSPLGQPDIKPSVVVQQGGRGDELH-GPGALQQ 126
G GGGGG GGGGG GG G P +G KP++ G + H P AL
Sbjct: 74 GTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYWMSGYQHHLNPEALNL 133
Query: 127 QHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNG 186
+ + H HH A HHP +AAAA G + G
Sbjct: 134 TPEDAVEALIGSGH------------HGAHHGA-HHP------AAAAAYEAFRGPGFAGG 174
Query: 187 GLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQ 246
G GA AG HHHG A HHA HH H H H H
Sbjct: 175 G--------------GADDMGAG-HHHGAHHAAHH-HHAAHHHHHHHHHH---------- 208
Query: 247 GPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADV---GLALGTLYGNVF 303
G GH G E+ + D L + + R+++ GF++ +V TL +
Sbjct: 209 GGAGHGGGAGHHVRLEERFSDDQLVSMSVRELNRQLR-GFSKEEVIRLKQKRRTLKNRGY 267
Query: 304 SQTTICRFEALQ 315
+Q+ CRF+ +Q
Sbjct: 268 AQS--CRFKRVQ 277
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 61.2 bits (147), Expect = 2e-09
Identities = 54/175 (30%), Positives = 69/175 (39%), Gaps = 41/175 (23%)
Query: 123 ALQQQHQQQQQQQQQQQQQQQQQQQQQRPPH-----LVHHAANHHPGPGAWRSAAAAAHL 177
+LQQQ QQQQQQQQQQQQQQQQQQQQQ+ ++ A+ + + A
Sbjct: 521 SLQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGH 580
Query: 178 PPSMGASNGGLLY-------SQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPH 230
P +G GGL++ +QP+F G G+ A + + HP
Sbjct: 581 PGDVG--QGGLVHGGPVGGLAQPNFEREGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPP 638
Query: 231 PHS------------------HPHQQPPPPP---------PPQGPPGHPGAHHDP 258
P P PPPPP P Q P PG H P
Sbjct: 639 PGDLLPRRMGGSGLPADCGPHDPSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVP 693
Score = 42.7 bits (99), Expect = 7e-04
Identities = 40/134 (29%), Positives = 45/134 (33%), Gaps = 48/134 (35%)
Query: 120 GPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPP 179
G L + H Q QQQ QQQQQ QQQQQQ
Sbjct: 281 GMVGLSKMHAQPPQQQPQQQQQPQQQQQQH------------------------------ 310
Query: 180 SMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQP 239
G+ + + S GA P GL + H P P P QQP
Sbjct: 311 -------GVFFERFS-------GARKMPVGLEP-SVGSRHPLMQPPQQAPPP---PQQQP 352
Query: 240 PPPPPPQGPPGHPG 253
P PP Q PP PG
Sbjct: 353 PQQPPQQQPPPPPG 366
Score = 36.2 bits (82), Expect = 0.061
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 52 GHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPS 106
G P A + T S G GGGGG GGGGG G + P QPD +PS
Sbjct: 745 GFPFGAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGGGGG---AYPP--QPDFQPS 794
Score = 32.3 bits (72), Expect = 0.89
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 31/86 (36%)
Query: 165 PGAWRSAAAAAHLPPSMGAS--------------NGGLLYSQPSFTVNGMLGAGGQPAGL 210
PG A +A PP +G + + G L +QP V+G G G QP
Sbjct: 45 PGPVDPAMSALGEPPILGMNMEPYGFHARGHSELHAGGLQAQP---VHGFFG-GQQP--- 97
Query: 211 HHHGLRDAHDEPHHADHHPHPHSHPH 236
HHG H HHPH H HPH
Sbjct: 98 -HHG--------HPGSHHPHQH-HPH 113
Score = 30.4 bits (67), Expect = 3.4
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 200 MLGAGGQPAGLHHHGLRDAHD-----EPHHA------DHHPHPHS-HPHQQPP 240
+LG +P G H G + H +P H HH HP S HPHQ P
Sbjct: 60 ILGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHP 112
Score = 29.6 bits (65), Expect = 5.7
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 81 GGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQ 140
GGGGG G G+P G ++ DE+H LQ Q Q Q+QQ +
Sbjct: 1119 GGGGGPGHPGTP------GLEQVRTPTSSSGAPPPDEIHPLEILQAQIQLQRQQFSISED 1172
Query: 141 Q 141
Q
Sbjct: 1173 Q 1173
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 60.5 bits (145), Expect = 3e-09
Identities = 29/53 (54%), Positives = 33/53 (62%)
Query: 47 ALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLG 99
A S+ H L A + GGGGGGGGGGGGGGGGGGGGG G + +P G
Sbjct: 430 AASSSWHTLFTAEEGQLYGPCGGGGGGGGGGGGGGGGGGGGGGGEAGAVAPYG 482
Score = 52.8 bits (125), Expect = 6e-07
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 121 PGA---LQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWR 169
PGA L QQ QQQQQQQQQQQQQQQQQQQQ+ P P A R
Sbjct: 50 PGASLLLLQQQQQQQQQQQQQQQQQQQQQQQETSPRQQQQQQGEDGSPQAHR 101
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 68 GGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLG 99
GGGGGGGGGGGGGGGG G ++ P G
Sbjct: 458 GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQG 489
Score = 30.0 bits (66), Expect = 4.4
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 125 QQQHQQQQQ-----QQQQQQQQQQQQQQQQRPP 152
QQQ QQQQQ QQQQQQ + Q +R P
Sbjct: 72 QQQQQQQQQETSPRQQQQQQGEDGSPQAHRRGP 104
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 59.3 bits (142), Expect = 7e-09
Identities = 64/217 (29%), Positives = 73/217 (33%), Gaps = 46/217 (21%)
Query: 66 SHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQ 125
S GGGGGG GGGGG GG SP L Q RG GPG
Sbjct: 8 SRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQ------------NRGPMGPGPGQSG 55
Query: 126 QQ--------HQQQQQQQQQQQQQQQ----------QQQQQQRPPHLVHH------AANH 161
+ HQQQQQ QQ QQ Q QQQ+PP A
Sbjct: 56 PKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGP 115
Query: 162 HPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDE 221
P PG + A++ PP+ ++G S P T P G
Sbjct: 116 GPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGA----------P 165
Query: 222 PHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDP 258
P P + P PPPPP P PG P
Sbjct: 166 PPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP 202
Score = 43.1 bits (100), Expect = 5e-04
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 229 PHPHSHPHQQPPPPPPPQGPPGH-PGAHHDPHSDEDTP 265
P PH Q PP PPPQ PP H P H PH + P
Sbjct: 63 PPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP 100
Score = 42.4 bits (98), Expect = 9e-04
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 227 HHPHPHSHPHQQPPPPPPP---------QGPPGHPGAHHDPHSDEDTP 265
H P PH PHQQ PPPPP QGP PG P + P
Sbjct: 85 HQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132
Score = 32.7 bits (73), Expect = 0.68
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 71 GGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGG---RGDELHGPGALQQQ 127
G G GG GG GG G P ++P G P KP +GG RG H P QQ
Sbjct: 201 GPGPGGPKGGKMPGGPKPGGGPGLSTPGGHP--KPP---HRGGGEPRGGRQHHPPYHQQH 255
Query: 128 HQ 129
HQ
Sbjct: 256 HQ 257
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 58.9 bits (141), Expect = 9e-09
Identities = 32/55 (58%), Positives = 35/55 (63%), Gaps = 10/55 (18%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPH----------LVHHAANHHPGP 165
PG QQQ QQQQQQQQQQQQQQQQQQ QQ+PP LV++ PGP
Sbjct: 213 PGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGP 267
Score = 36.2 bits (82), Expect = 0.061
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 123 ALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
A+Q + QQQQQQQQQQQQQQQQ+
Sbjct: 205 AVQGKRTLPGLQQQQQQQQQQQQQQQQQ 232
Score = 32.7 bits (73), Expect = 0.68
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 114 RGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
RG L L Q ++ QQQQQQQQQQQQQQ+
Sbjct: 194 RGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQ 230
Score = 30.4 bits (67), Expect = 3.4
Identities = 34/134 (25%), Positives = 43/134 (32%), Gaps = 46/134 (34%)
Query: 152 PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLH 211
P VH PGP + +H P+MG+++ F GM G+H
Sbjct: 37 PGSVHSMMGPSPGP------PSVSHPMPTMGSTD---------FPQEGMHQMHKPIDGIH 81
Query: 212 HHGL-RDAH---------DEPHHA--------DHHPHPHSHPHQQP-------------P 240
G+ D H PH D H + PH P
Sbjct: 82 DKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGG 141
Query: 241 PPPPPQGPPGHPGA 254
P PPQ PP PGA
Sbjct: 142 GPTPPQMPPSQPGA 155
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 58.9 bits (141), Expect = 9e-09
Identities = 32/55 (58%), Positives = 35/55 (63%), Gaps = 10/55 (18%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPH----------LVHHAANHHPGP 165
PG QQQ QQQQQQQQQQQQQQQQQQ QQ+PP LV++ PGP
Sbjct: 213 PGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGP 267
Score = 36.2 bits (82), Expect = 0.061
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 123 ALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
A+Q + QQQQQQQQQQQQQQQQ+
Sbjct: 205 AVQGKRTLPGLQQQQQQQQQQQQQQQQQ 232
Score = 32.7 bits (73), Expect = 0.68
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 114 RGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
RG L L Q ++ QQQQQQQQQQQQQQ+
Sbjct: 194 RGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQ 230
Score = 30.4 bits (67), Expect = 3.4
Identities = 34/134 (25%), Positives = 43/134 (32%), Gaps = 46/134 (34%)
Query: 152 PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLH 211
P VH PGP + +H P+MG+++ F GM G+H
Sbjct: 37 PGSVHSMMGPSPGP------PSVSHPMPTMGSTD---------FPQEGMHQMHKPIDGIH 81
Query: 212 HHGL-RDAH---------DEPHHA--------DHHPHPHSHPHQQP-------------P 240
G+ D H PH D H + PH P
Sbjct: 82 DKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGG 141
Query: 241 PPPPPQGPPGHPGA 254
P PPQ PP PGA
Sbjct: 142 GPTPPQMPPSQPGA 155
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 58.9 bits (141), Expect = 9e-09
Identities = 48/127 (37%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQ--QQRPPHLVHHAANHHPGPGAWRSAAAAAHLP 178
P QQQ QQQQQQQQQQQQQQQQQQQ Q RPP H G +A +P
Sbjct: 258 PQLQQQQQQQQQQQQQQQQQQQQQQQQQLQARPPQ--QHQQQQPQGIRPQFTAPTQVPVP 315
Query: 179 PSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQ 238
P G L P+ G LG G L P P Q
Sbjct: 316 PGWNQLPSGALQPPPA---QGSLGTMTANQGWKKAPL----PGPMQQQLQARPSLATVQT 368
Query: 239 PPPPPPP 245
P PPPP
Sbjct: 369 PSHPPPP 375
Score = 43.9 bits (102), Expect = 3e-04
Identities = 47/164 (28%), Positives = 57/164 (34%), Gaps = 21/164 (12%)
Query: 92 PWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRP 151
P S + P P + QQ + + QQQ QQQQ Q + QQ QQQQ Q RP
Sbjct: 245 PVSVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQQQQQQLQARPPQQHQQQQPQGIRP 304
Query: 152 PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLH 211
A P P W + A PP S G + +Q G + A L
Sbjct: 305 QFT---APTQVPVPPGWNQLPSGALQPPPAQGSLGTMTANQ-----------GWKKAPLP 350
Query: 212 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAH 255
+ P A H PPPP P G AH
Sbjct: 351 GPMQQQLQARPSLATVQTPSH-------PPPPYPFGSQQASQAH 387
Score = 33.1 bits (74), Expect = 0.52
Identities = 20/35 (57%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 121 PGALQQQHQQQQQQQQQ-----QQQQQQQQQQQQR 150
P QQQ Q Q QQQQ Q Q QQQQQQQQ+
Sbjct: 998 PQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQ 1032
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 127 QHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPG 166
Q Q QQQQQQQQQ QQ + + N HP G
Sbjct: 1020 QPQSQQQQQQQQQMMMMLMMQQDPKSVRLPVSQNVHPPRG 1059
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLV 155
P Q Q Q QQQQ Q Q QQQQQ+ ++
Sbjct: 1000 PPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQMM 1034
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 121 PGALQQQHQQQQQQQQQQQQQQQQQQ 146
P Q Q QQQQQQQQQ QQ
Sbjct: 1016 PPPSQPQSQQQQQQQQQMMMMLMMQQ 1041
>gi|122937189 family with sequence similarity 155, member A [Homo
sapiens]
Length = 458
Score = 58.5 bits (140), Expect = 1e-08
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 125 QQQHQQQQQQQQQQQQQQQQQQQQQRP--PHLVHHAANHHPGPGAWR--SAAAAAHLPPS 180
QQ+ QQQQQQQQ+Q+QQQQQQ++QQ P P L+ P A R SA+++ LPPS
Sbjct: 75 QQRQQQQQQQQQRQRQQQQQQRRQQEPSWPALLASMGESSPAAQAHRLLSASSSPTLPPS 134
Query: 181 MGASNGG 187
G GG
Sbjct: 135 PGDGGGG 141
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 47 ALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGD 89
A P + AH+ ++A S G GGGGGG G G D
Sbjct: 108 ASMGESSPAAQAHRLLSASSSPTLPPSPGDGGGGGGKGNRGKD 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,242,256
Number of Sequences: 37866
Number of extensions: 1708678
Number of successful extensions: 64847
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 21893
Number of HSP's gapped (non-prelim): 19507
length of query: 443
length of database: 18,247,518
effective HSP length: 105
effective length of query: 338
effective length of database: 14,271,588
effective search space: 4823796744
effective search space used: 4823796744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.