Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SAMD9L Sequence: fasta or formatted (1584aa) NCBI GI: 51339291
Description:

sterile alpha motif domain containing 9-like

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         72           2
 C cysteine            1.9         30           1
 D aspartate           5.1         80           2
 E glutamate           8.5        135           3
 F phenylalanine       4.5         72           2
 G glycine             3.5         55           2
 H histidine           2.5         39           2
 I isoleucine          6.3        100           2
 K lysine              9.8        155           3
 L leucine            10.8        171           3
 M methionine          2.1         34           1
 N asparagine          5.6         89           2
 P proline             3.3         53           2
 Q glutamine           4.4         70           2
 R arginine            4.4         69           2
 S serine              7.8        123           3
 T threonine           4.7         74           2
 V valine              4.7         75           2
 W tryptophan          1.5         24           2
 Y tyrosine            4.0         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 9-like 
SAMD9                 0.578   sterile alpha motif domain containing 9 
POLQ                  0.004   DNA polymerase theta 
DGKH                  0.004   diacylglycerol kinase, eta isoform 2 
MYST4                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
SAMD12                0.003   sterile alpha motif domain containing 12 isoform a ...
SAMD12                0.003   sterile alpha motif domain containing 12 isoform b ...
CCDC18                0.003   sarcoma antigen NY-SAR-41 
ZEB2                  0.003   zinc finger homeobox 1b 
FBXW7                 0.003   F-box and WD repeat domain containing 7 isoform 1 [H...
SMC4                  0.003   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.003   SMC4 structural maintenance of chromosomes 4-like 1 ...
WDR87                 0.003   NYD-SP11 protein 
GTF2F1                0.003   general transcription factor IIF, polypeptide 1, 74...
SMG7                  0.003   SMG-7 homolog isoform 1 
SMG7                  0.003   SMG-7 homolog isoform 4 
SMG7                  0.003   SMG-7 homolog isoform 2 
SFRS12                0.003   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.003   splicing factor, arginine/serine-rich 12 isoform b [...
FGD1                  0.002   faciogenital dysplasia protein 
RTF1                  0.002   Paf1/RNA polymerase II complex component 
SAMD11                0.002   sterile alpha motif domain containing 11 
AHI1                  0.002   Abelson helper integration site 1 isoform b 
AHI1                  0.002   Abelson helper integration site 1 isoform a 
AHI1                  0.002   Abelson helper integration site 1 isoform a 
AHI1                  0.002   Abelson helper integration site 1 isoform a 
ZFYVE26               0.002   zinc finger, FYVE domain containing 26 
ERLIN2                0.002   ER lipid raft associated 2 isoform 1 
NKAP                  0.002   NFKB activating protein 
LOC647286             0.002   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press