Guide to the Human Genome
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Name: SAMD12 Sequence: fasta or formatted (201aa) NCBI GI: 156119595
Description:

sterile alpha motif domain containing 12 isoform b

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [161aa] sterile alpha motif domain containing 12 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         11           1
 C cysteine            1.5          3           1
 D aspartate           3.5          7           1
 E glutamate           7.5         15           2
 F phenylalanine       1.5          3           1
 G glycine             6.5         13           1
 H histidine           3.5          7           1
 I isoleucine          7.0         14           2
 K lysine              8.5         17           2
 L leucine            13.9         28           3
 M methionine          1.5          3           1
 N asparagine          4.0          8           1
 P proline             3.5          7           1
 Q glutamine           9.5         19           2
 R arginine            6.0         12           2
 S serine              4.0          8           1
 T threonine           5.5         11           2
 V valine              5.0         10           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 12 isoform b ... 
SAMD12                0.759   sterile alpha motif domain containing 12 isoform a ...
SAMD10                0.271   sterile alpha motif domain containing 10 
CNKSR2                0.053   connector enhancer of kinase suppressor of Ras 2 [Ho...
DGKD                  0.042   diacylglycerol kinase, delta 130kDa isoform 1 
DGKD                  0.042   diacylglycerol kinase, delta 130kDa isoform 2 
ZAK                   0.040   MLK-related kinase isoform 1 
BFAR                  0.037   bifunctional apoptosis regulator 
CNKSR1                0.037   connector enhancer of kinase suppressor of Ras 1 [H...
DGKH                  0.037   diacylglycerol kinase, eta isoform 2 
SHANK2                0.034   SH3 and multiple ankyrin repeat domains 2 isoform 1...
PPFIBP1               0.032   PTPRF interacting protein binding protein 1 isoform ...
SARM1                 0.032   sterile alpha and TIR motif containing 1 
ANKS6                 0.032   ankyrin repeat and sterile alpha motif domain contai...
SHANK3                0.027   SH3 and multiple ankyrin repeat domains 3 
SAMD14                0.027   sterile alpha motif domain containing 14 
ETV6                  0.027   ets variant 6 
SAMD9L                0.027   sterile alpha motif domain containing 9-like 
PPFIBP2               0.027   PTPRF interacting protein, binding protein 2 (lipri...
SCML4                 0.024   sex comb on midleg-like 4 
SCMH1                 0.024   sex comb on midleg 1 isoform 1 
SCMH1                 0.021   sex comb on midleg 1 isoform 2 
SAMHD1                0.021   SAM domain- and HD domain-containing protein 1 [Homo...
CARS                  0.019   cysteinyl-tRNA synthetase isoform d 
CARS                  0.019   cysteinyl-tRNA synthetase isoform c 
CARS                  0.019   cysteinyl-tRNA synthetase isoform b 
SCML2                 0.019   sex comb on midleg-like 2 
SAMD9                 0.019   sterile alpha motif domain containing 9 
CCDC41                0.016   NY-REN-58 antigen 
CCDC41                0.016   NY-REN-58 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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