Guide to the Human Genome
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Name: LOC647286 Sequence: fasta or formatted (198aa) NCBI GI: 239756177
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          3           1
 C cysteine            1.5          3           1
 D aspartate           7.1         14           1
 E glutamate           7.6         15           1
 F phenylalanine       3.0          6           1
 G glycine             3.5          7           1
 H histidine           2.5          5           1
 I isoleucine          5.1         10           1
 K lysine              7.6         15           2
 L leucine             8.1         16           2
 M methionine          1.5          3           1
 N asparagine          4.0          8           1
 P proline             6.6         13           1
 Q glutamine           5.6         11           1
 R arginine            6.1         12           1
 S serine              9.6         19           3
 T threonine           5.6         11           2
 V valine              6.6         13           1
 W tryptophan          3.0          6           1
 Y tyrosine            4.0          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
RD3                   0.136   retinal degeneration 3 
SAMD9L                0.015   sterile alpha motif domain containing 9-like 
CCDC151               0.015   coiled-coil domain containing 151 
ZNF609                0.013   zinc finger protein 609 
KTN1                  0.013   kinectin 1 isoform b 
KTN1                  0.013   kinectin 1 isoform a 
KTN1                  0.013   kinectin 1 isoform c 
KTN1                  0.013   kinectin 1 isoform a 
CCDC152               0.013   coiled-coil domain containing 152 
WDR87                 0.010   NYD-SP11 protein 
MLLT4                 0.010   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.010   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.010   myeloid/lymphoid or mixed-lineage leukemia (trithora...
RBM28                 0.010   RNA binding motif protein 28 
PLCB3                 0.008   phospholipase C beta 3 
NPC1                  0.008   Niemann-Pick disease, type C1 precursor 
SLK                   0.008   serine/threonine kinase 2 
EXOSC9                0.008   exosome component 9 isoform 1 
EXOSC9                0.008   exosome component 9 isoform 2 
TNIP3                 0.008   TNFAIP3 interacting protein 3 
TNIP3                 0.008   TNFAIP3 interacting protein 3 
MIOS                  0.008   missing oocyte, meiosis regulator, homolog 
PSME4                 0.008   proteasome (prosome, macropain) activator subunit 4...
AP3B1                 0.005   adaptor-related protein complex 3, beta 1 subunit [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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