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Search of human proteins with 51317353
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51317353 RNA binding motif, single stranded interacting
protein 3 isoform 3 [Homo sapiens]
(419 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51317353 RNA binding motif, single stranded interacting prote... 855 0.0
gi|51317355 RNA binding motif, single stranded interacting prote... 839 0.0
gi|51317351 RNA binding motif, single stranded interacting prote... 795 0.0
gi|4506447 RNA binding motif, single stranded interacting protei... 568 e-162
gi|8400718 RNA binding motif, single stranded interacting protei... 562 e-160
gi|4506449 RNA binding motif, single stranded interacting protei... 516 e-146
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 116 3e-26
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 113 3e-25
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 113 3e-25
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 113 3e-25
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 113 3e-25
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 113 3e-25
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 105 1e-22
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 105 1e-22
gi|38201714 ELAV-like 1 [Homo sapiens] 101 1e-21
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 84 2e-16
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 82 1e-15
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 81 2e-15
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 81 2e-15
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 81 2e-15
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 78 1e-14
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 78 2e-14
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 74 2e-13
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 74 2e-13
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 73 4e-13
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 70 4e-12
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 70 4e-12
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 68 1e-11
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 68 1e-11
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 68 1e-11
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 855 bits (2208), Expect = 0.0
Identities = 419/419 (100%), Positives = 419/419 (100%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKT 60
MGKRLDQPQMYPQYTYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKT
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKT 60
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS
Sbjct: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
Query: 121 LKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRG 180
LKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRG
Sbjct: 121 LKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRG 180
Query: 181 VGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGR 240
VGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGR
Sbjct: 181 VGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGR 240
Query: 241 PWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVIT 300
PWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVIT
Sbjct: 241 PWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVIT 300
Query: 301 PTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTY 360
PTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTY
Sbjct: 301 PTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTY 360
Query: 361 IPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP 419
IPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP
Sbjct: 361 IPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP 419
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 839 bits (2168), Expect = 0.0
Identities = 419/437 (95%), Positives = 419/437 (95%), Gaps = 18/437 (4%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTK-SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 59
MGKRLDQPQMYPQYTYYYPHYLQTK SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 120 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 179
SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR
Sbjct: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
Query: 180 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 239
GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG
Sbjct: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
Query: 240 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ---- 295
RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ
Sbjct: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
Query: 296 -------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL 342
GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL
Sbjct: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL 360
Query: 343 HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 402
HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV
Sbjct: 361 HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 420
Query: 403 DTSNEHAPAYSYQQSKP 419
DTSNEHAPAYSYQQSKP
Sbjct: 421 DTSNEHAPAYSYQQSKP 437
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 795 bits (2053), Expect = 0.0
Identities = 402/436 (92%), Positives = 402/436 (92%), Gaps = 34/436 (7%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTK-SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 59
MGKRLDQPQMYPQYTYYYPHYLQTK SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 120 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 179
SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR
Sbjct: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
Query: 180 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 239
GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG
Sbjct: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
Query: 240 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ---- 295
RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ
Sbjct: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
Query: 296 -------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL 342
GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT
Sbjct: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT---------- 350
Query: 343 HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 402
YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV
Sbjct: 351 ------YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 404
Query: 403 DTSNEHAPAYSYQQSK 418
DTSNEHAPAYSYQQSK
Sbjct: 405 DTSNEHAPAYSYQQSK 420
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 568 bits (1463), Expect = e-162
Identities = 302/439 (68%), Positives = 339/439 (77%), Gaps = 57/439 (12%)
Query: 1 MGKRLDQPQMYPQY-TYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQL 57
MGK Q QMYPQY TYYYP YLQ K HPMAPPSPST SS+NNSS+ NS +QL
Sbjct: 1 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQL 59
Query: 58 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKA 117
SKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSPAAAQKA
Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119
Query: 118 VASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGV 177
V++LKA+GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD++G
Sbjct: 120 VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT 179
Query: 178 SRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQ 237
SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +KY
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIP 239
Query: 238 NGRPWPREGEAGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ- 295
NGRPW REGEAGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASPVS YQ
Sbjct: 240 NGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASPVSAYQV 298
Query: 296 ----------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRI 339
GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 299 QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT------- 351
Query: 340 MILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQ 399
YM A + MQG Y+PQY + TAV +E + SG QQQ
Sbjct: 352 ---------YMPATSAMQGAYLPQYAHMQTTAVPVE----------------EASG-QQQ 385
Query: 400 IAVDTSNEHAPAYSYQQSK 418
+AV+TSN+H+P Y++Q +K
Sbjct: 386 VAVETSNDHSP-YTFQPNK 403
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 562 bits (1449), Expect = e-160
Identities = 302/442 (68%), Positives = 339/442 (76%), Gaps = 60/442 (13%)
Query: 1 MGKRLDQPQMYPQY-TYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQL 57
MGK Q QMYPQY TYYYP YLQ K HPMAPPSPST SS+NNSS+ NS +QL
Sbjct: 1 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQL 59
Query: 58 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKA 117
SKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSPAAAQKA
Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119
Query: 118 VASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGV 177
V++LKA+GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD++G
Sbjct: 120 VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT 179
Query: 178 SRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQ 237
SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +KY
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIP 239
Query: 238 NGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVST 293
NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASPVS
Sbjct: 240 NGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASPVSA 298
Query: 294 YQ-----------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQ 336
YQ GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 299 YQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT---- 354
Query: 337 DRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQ 396
YM A + MQG Y+PQY + TAV +E + SG
Sbjct: 355 ------------YMPATSAMQGAYLPQYAHMQTTAVPVE----------------EASG- 385
Query: 397 QQQIAVDTSNEHAPAYSYQQSK 418
QQQ+AV+TSN+H+P Y++Q +K
Sbjct: 386 QQQVAVETSNDHSP-YTFQPNK 406
>gi|4506449 RNA binding motif, single stranded interacting protein 2
[Homo sapiens]
Length = 407
Score = 516 bits (1330), Expect = e-146
Identities = 266/421 (63%), Positives = 312/421 (74%), Gaps = 62/421 (14%)
Query: 25 KSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYG 84
K Y MAPPSPS NS+ N+SS ++ +QLSKTNLYIRGL PGTTDQDL+KLCQPYG
Sbjct: 22 KPYVSLAQQMAPPSPS-NSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYG 80
Query: 85 KIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYIS 144
KIVSTKAILDK TN+CKGYGFVDFDSP+AAQKAV +LKA+GVQAQMAKQQEQDPTNLYIS
Sbjct: 81 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYIS 140
Query: 145 NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
NLP+SMDEQELE MLKPFG VISTRILRD +G SRGVGFARMESTEKCE +I HFNGKY+
Sbjct: 141 NLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 200
Query: 205 KTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAG-MALTYDPTAAIQNG 263
KTPPG+PAPS+PLLCKFADGG KKRQNQ K+ QNGR WPR + G MALTYDPT A+QNG
Sbjct: 201 KTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMALTYDPTTALQNG 260
Query: 264 FYSSPYSIATNRMIPQTSITPFIAASPVSTYQ--------------------------GA 297
FY +PY+I NRM+ Q++++P++ +SPVS+YQ G+
Sbjct: 261 FYPAPYNITPNRMLAQSALSPYL-SSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGS 319
Query: 298 VITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQ 357
V+TP MDHP+S+QPA+MMGPLTQQ+ HLSL +TGT YM AA MQ
Sbjct: 320 VLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGT----------------YMPTAAAMQ 363
Query: 358 GTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQS 417
G YI QYTPVP ++VS+E ++SGQQ Q+AVD +EH YS+Q +
Sbjct: 364 GAYISQYTPVPSSSVSVE----------------ESSGQQNQVAVDAPSEHG-VYSFQFN 406
Query: 418 K 418
K
Sbjct: 407 K 407
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 116 bits (291), Expect = 3e-26
Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 15/207 (7%)
Query: 39 PSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN 98
P+T +++ +S +S + SKTNL + LP T ++L L G+I S K + DK T
Sbjct: 18 PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG 77
Query: 99 QCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMD 151
Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP +M
Sbjct: 78 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMT 137
Query: 152 EQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGI 210
++ELE + +G +I++RIL D G+SRGVGF R + + E I+ NG + PPG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPG- 193
Query: 211 PAPSEPLLCKFADGGQKKRQNQSKYTQ 237
+EP+ KFA+ +K NQ+ +Q
Sbjct: 194 --ATEPITVKFANNPSQK-TNQAILSQ 217
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + L ++ P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Score = 38.9 bits (89), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L M PFG V + +++RD N +G GF M + ++ + I
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 200 NG 201
NG
Sbjct: 338 NG 339
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 33 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 83
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 84 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 139
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 140 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 195
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 196 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 228
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 29 PAPHPMAPP--SPST-NSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGK 85
P P PP SP T + ++ N G + +++ L P + + L +L P+G
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 86 IVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+ + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 200 NG 201
NG
Sbjct: 359 NG 360
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 33 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 83
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 13 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 72
Query: 84 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 139
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 73 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 132
Query: 140 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 195
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 133 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 192
Query: 196 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 228
I+ NG + P G +EP+ KFA+ +K
Sbjct: 193 IKGLNG---QKPSG---ATEPITVKFANNPSQK 219
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 200 NG 201
NG
Sbjct: 348 NG 349
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 33 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 83
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 84 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 139
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 140 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 195
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 196 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 228
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 200 NG 201
NG
Sbjct: 345 NG 346
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 33 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 83
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 27 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 86
Query: 84 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 139
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 87 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 146
Query: 140 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 195
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 147 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 206
Query: 196 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 228
I+ NG + P G +EP+ KFA+ +K
Sbjct: 207 IKGLNG---QKPSG---ATEPITVKFANNPSQK 233
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 200 NG 201
NG
Sbjct: 362 NG 363
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 33 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 83
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 84 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 139
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 140 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 195
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 196 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 228
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 200 NG 201
NG
Sbjct: 345 NG 346
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 105 bits (261), Expect = 1e-22
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 36 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 149 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
Query: 208 PGIPAPSEPLLCKFADGGQKK 228
G +EP+ KFA+ +K
Sbjct: 192 LG---AAEPITVKFANNPSQK 209
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 200 NG 201
NG
Sbjct: 346 NG 347
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 105 bits (261), Expect = 1e-22
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 36 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 149 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
Query: 208 PGIPAPSEPLLCKFADGGQKK 228
G +EP+ KFA+ +K
Sbjct: 192 LG---AAEPITVKFANNPSQK 209
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 199
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 200 NG 201
NG
Sbjct: 339 NG 340
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 101 bits (252), Expect = 1e-21
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 41 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQC 100
+N ++ + + G+ + +TNL + LP T +L L G++ S K I DK
Sbjct: 2 SNGYEDHMAEDCRGD-IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 101 KGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMDEQ 153
GYGFV++ + A++A+ +L +Q++ K P+ NLYIS LP +M ++
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Query: 154 ELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 212
++E+M FG +I++R+L D G+SRGV F R + + E I FNG PPG
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPG--- 174
Query: 213 PSEPLLCKFA 222
SEP+ KFA
Sbjct: 175 SSEPITVKFA 184
Score = 47.0 bits (110), Expect = 3e-05
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 33 PMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAI 92
PM S S N N SSG ++I L + L ++ P+G + + K I
Sbjct: 222 PMGVDHMSGLSGVNVPGNASSG-----WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVI 276
Query: 93 LDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
D NTN+CKG+GFV + A A+ASL
Sbjct: 277 RDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 60/209 (28%)
Query: 53 SGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK----------------- 95
S E + NLYI GLP T +D+ + +G+I++++ ++D+
Sbjct: 99 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158
Query: 96 ---------------------------NTNQCKGYGFVD---------FDSPAAAQKAVA 119
N NQ K + F P Q
Sbjct: 159 EAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRF 218
Query: 120 SLKANGVQAQMAKQQEQDPTN------LYISNLPISMDEQELENMLKPFGHVISTRILRD 173
GV P N ++I NL DE L M PFG V + +++RD
Sbjct: 219 RFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 278
Query: 174 AN-GVSRGVGFARMESTEKCEVVIQHFNG 201
N +G GF M + E+ + I NG
Sbjct: 279 FNTNKCKGFGFVTMTNYEEAAMAIASLNG 307
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 21/159 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L +G I+S K D++ + +G+GFV F++ AAQ+A+ +
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHEAAQQAINT 157
Query: 121 LKANGVQAQMAK--------QQEQDP---------TNLYISNLPISMDEQELENMLKPFG 163
+ NG+ K ++E++ TN+Y+ NLP+ +DEQ L+++ FG
Sbjct: 158 M--NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG 215
Query: 164 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
++S +++RD +G SR GF E E+ + + H NGK
Sbjct: 216 KMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
Score = 79.3 bits (194), Expect = 6e-15
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 57 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 116
L TN+Y++ LP +Q L L +GK++S K + D N+ + +GFV+F+ AQK
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQK 246
Query: 117 AVASLKANGVQAQMA-------------------KQQEQDP------TNLYISNLPISMD 151
AV + V ++ +Q +QD NLY+ NL S+D
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306
Query: 152 EQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 208
+ +L P+G + S +++ + G S+G GF S E+ + NG+ + T P
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Score = 78.6 bits (192), Expect = 1e-14
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N+SG +LY+ L P T+ L + P G I+S + D T + GY +++F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDP-------TNLYISNLPISMDEQELENMLKP 161
PA A++A+ ++ ++ Q + ++DP N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
FG+++S ++ D +G SRG GF E+ E + I NG L
Sbjct: 122 FGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLL 163
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 81.6 bits (200), Expect = 1e-15
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N S +LY+ L P T+ L + P G I+S + D T + GY +V+F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 161
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
FG+++S +++ D NG S+G GF E+ E E I+ NG L
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 80.5 bits (197), Expect = 3e-15
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L +G I+S K + D+N + KGYGFV F++ AA++A+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIE- 156
Query: 121 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 163
K NG+ + + K++E ++ TN+YI N MD++ L+++ FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 164 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
+S +++ D +G S+G GF E E + + NGK L
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Score = 75.9 bits (185), Expect = 6e-14
Identities = 73/288 (25%), Positives = 119/288 (41%), Gaps = 42/288 (14%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN+YI+ D+ L L +G +S K + D++ + KG+GFV F+ AQKAV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 120 SLKA---NGVQAQMAKQQEQ----------------------DPTNLYISNLPISMDEQE 154
+ NG Q + + Q++ NLY+ NL +D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 214
L PFG + S +++ + G S+G GF S E+ + NG+ + T
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-------- 360
Query: 215 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDP-TAAIQNGFYSSPYSIAT 273
+PL A Q+K + Q+ T A +P A +G++ +
Sbjct: 361 KPLYVALA---QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 274 NR--MIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLT 319
NR P + I + SP T QGA P + P +++PA P +
Sbjct: 418 NRAAYYPPSQIAQ-LRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS 464
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 121 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 163
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 164 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 78.6 bits (192), Expect = 1e-14
Identities = 90/385 (23%), Positives = 146/385 (37%), Gaps = 60/385 (15%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 120 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 154
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 214
L PFG + S +++ + +G S+G GF S E+ + NG+ + S
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 215 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 274
+PL A Q+K + ++ T + AGM P AI N F +
Sbjct: 361 KPLYVALA---QRKEERKAHLTNQ----YMQRVAGMRAL--PANAILNQFQPAAGGY--- 408
Query: 275 RMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQ 334
F+ A P + + TP M P G Q + + Q
Sbjct: 409 ----------FVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGM---PSAIRQ 455
Query: 335 SQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTS 394
S R + H A+ + T P ++ VA +P+ VAP +S
Sbjct: 456 SGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS 515
Query: 395 GQQQQIAVDTSNEHAPAYSYQQSKP 419
+ A+ PA Q +P
Sbjct: 516 VRSPHPAIQPLQAPQPAVHVQGQEP 540
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 161
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 221
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 222 ADGGQKKRQNQSKYTQN 238
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 121 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 163
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 164 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 80.1 bits (196), Expect = 3e-15
Identities = 96/398 (24%), Positives = 152/398 (38%), Gaps = 73/398 (18%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 120 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 154
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 214
L PFG + S +++ + +G S+G GF S E+ + NG+ + S
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 215 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 274
+PL A Q+K + ++ T + AGM P AI N F +
Sbjct: 361 KPLYVALA---QRKEERKAHLTNQ----YMQRVAGMRAL--PANAILNQFQPAAGGY--- 408
Query: 275 RMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQ 334
F+ A P + + TP M P G Q + + Q
Sbjct: 409 ----------FVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGM---PSAIRQ 455
Query: 335 SQDRIMILH----------QLLCQYMTAAAPMQGTYIPQYTPVPPTAV---SIEGVVADT 381
S R + H +L + A A QG + PTAV + VA
Sbjct: 456 SGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAA 515
Query: 382 SPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP 419
+P+ VAP +S + A+ PA Q +P
Sbjct: 516 APRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEP 553
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 161
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 221
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 222 ADGGQKKRQNQSKYTQN 238
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 121 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 163
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 164 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 79.0 bits (193), Expect = 8e-15
Identities = 103/412 (25%), Positives = 160/412 (38%), Gaps = 85/412 (20%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 120 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 154
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 214
L PFG + S +++ + +G S+G GF S E+ + NG+ + S
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 215 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGF---------- 264
+PL A Q+K + ++ T + AGM P AI N F
Sbjct: 361 KPLYVALA---QRKEERKAHLTNQ----YMQRVAGMRAL--PANAILNQFQPAAGGYFVP 411
Query: 265 ----------YSSPYSIATNRMIP--QTSITPFIAASPVSTYQGAVITPTMDH--PMSMQ 310
Y +P +A R P Q P S + + PT+ H P
Sbjct: 412 AVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNA 471
Query: 311 PANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPT 370
PA+ P T Q +G+ + DR L + A A QG + PT
Sbjct: 472 PASRGLPTTTQ----RVGS----ECPDR------LAMDFGGAGAAQQGLTDSCQSGGVPT 517
Query: 371 AV---SIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP 419
AV + VA +P+ VAP +S + A+ PA Q +P
Sbjct: 518 AVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEP 569
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 161
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 221
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 222 ADGGQKKRQNQSKYTQN 238
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 78.2 bits (191), Expect = 1e-14
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 23/162 (14%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++++ L ++ L +G I+S + D+N + KGYGFV F++ AA++A+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS--KGYGFVHFETHEAAERAIK- 156
Query: 121 LKANGV------------------QAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPF 162
K NG+ +A++ + ++ P N+YI N MD++ L+++ F
Sbjct: 157 -KMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP-NVYIKNFGEDMDDERLKDLFGKF 214
Query: 163 GHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
G +S +++ D +G S+G GF E E + + NGK L
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Score = 73.2 bits (178), Expect = 4e-13
Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 60/285 (21%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N+YI+ D+ L L +G +S K + D++ + KG+GFV F+ AQKAV
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 121 LKA---NGVQAQMAKQQEQ----------------------DPTNLYISNLPISMDEQEL 155
+ NG Q + + Q++ NLY+ NL +D++ L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310
Query: 156 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 215
PFG + S +++ + G S+G GF S E+ + NG+ + T +
Sbjct: 311 RKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT--------K 361
Query: 216 PLLCKFADGGQKKRQNQSKYTQ---------NGRPWPREGEAGMALTYDPTAAIQNGFYS 266
PL A Q+K + Q+ T P R +G +T P +Y
Sbjct: 362 PLYVALA---QRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY- 417
Query: 267 SPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQP 311
P IA R SP T QGA P + P +++P
Sbjct: 418 PPSQIARLR------------PSPRWTAQGARPHPFQNKPSAIRP 450
Score = 67.8 bits (164), Expect = 2e-11
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 51 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 110
N S +LY+ L P T+ L + P G I+S + D T+ Y +V+F
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 111 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 161
A+ A+ ++ + ++ + + ++DP+ N+++ NL S++ + L + +
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSA 121
Query: 162 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
FG+++S ++ D NG S+G GF E+ E E I+ NG L
Sbjct: 122 FGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLL 163
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 77.8 bits (190), Expect = 2e-14
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L L +G I+S K + D N + KGY +V FDS AAA +A+
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWH 164
Query: 121 LKANGVQ------------------AQMAKQQEQDPTNLYISNLPISMDEQELENMLKPF 162
+ NGV+ A++ + TN+++ N+ +D+++L+ + +
Sbjct: 165 M--NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222
Query: 163 GHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
G S +++RDA+G S+G GF R E+ E + + +GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 69.3 bits (168), Expect = 6e-12
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 59 KTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV 118
K LY+ L P T+ L K +P G + T+ D T GYG+V+F PA A+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 119 ASLK---ANGVQAQMAKQQEQDPT------NLYISNLPISMDEQELENMLKPFGHVISTR 169
++ NG ++ Q D N++I NL S+D + L + FG+++S +
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 170 ILRDANGVSRGVGFARMESTEKCEVVIQHFNG 201
++ D NG S+G + +S I H NG
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 59.3 bits (142), Expect = 6e-09
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN++++ + D+ L +L YG S K I D + + KG+GFV +++ AAQKAV
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVL 257
Query: 120 SLKANGVQAQM------------------------AKQQEQDP-TNLYISNLPISMDEQE 154
L + ++ K++ + P +YI NL ++++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 208
L+ FG + +++ + G +G G S E+ + NG+ + + P
Sbjct: 318 LKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
+LY+ L P T+ L + P G I+S + DK T + GY +V++ P A++A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 121 LKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRIL 171
L + ++ + + ++DP+ N++I NL ++D + L N+ FG+++S ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 172 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
D G +G GF + E E I NG +L
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
+LY+ L P T+ L + P G I+S + DK T + GY +V++ P A++A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 121 LKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRIL 171
L + ++ + + ++DP+ N++I NL ++D + L N+ FG+++S ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 172 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
D G +G GF + E E I NG +L
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 73.2 bits (178), Expect = 4e-13
Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 17/157 (10%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
N++I+ L ++ L + +GKI+S+K + D + KGY FV F + +AA +A+
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEE 156
Query: 121 LKANGVQAQMA---------------KQQEQDPTNLYISNLPISMDEQELENMLKPFGHV 165
+ ++ + + + TN+YI N MD++ L+++ +G
Sbjct: 157 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 166 ISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
+S +++ D++G S+G GF +S E + ++ NG+
Sbjct: 217 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
Score = 72.8 bits (177), Expect = 5e-13
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
TN+YI+ D+ L + YGK +S K + D ++ + KG+GFV FDS AA+KAV
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 120 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 154
+ + QA++ + EQ LYI NL ++D+++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 155 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 208
L N FG + +++++ G S+G G S E + NG+ L + P
Sbjct: 309 LRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Score = 62.8 bits (151), Expect = 6e-10
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 120
+LY+ L T+ L + G ++S + D+ T + GY +V+F A AQKA+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 121 LKANGVQAQM---------AKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRIL 171
+ + ++ + A + N++I NL S+D + L FG ++S++++
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 172 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYLK 205
D G S+G F ++ + I+ NGK LK
Sbjct: 131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLK 163
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 70.1 bits (170), Expect = 4e-12
Identities = 88/387 (22%), Positives = 148/387 (38%), Gaps = 56/387 (14%)
Query: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF---DSPAAAQKAV 118
L++ +P ++DL + + +G+I I DK T KG F+ + DS AQ A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 119 ASLKA-----NGVQAQMAKQQEQ-DPTNLYISNLPISMDEQELENMLKPFGHVISTRILR 172
K +Q + A + + + L++ L ++++ M +PFG + +LR
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128
Query: 173 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQ 230
+G S+G F + ++ + + I L + +P S L+ KFAD +++ R+
Sbjct: 129 GPDGTSKGCAFVKFQTHAEAQAAI-----NTLHSSRTLPGASSSLVVKFADTEKERGLRR 183
Query: 231 NQSKYTQNGRPWPREGEAGMALTYDPT----------------------AAIQ------- 261
Q TQ G P + G Y AA+Q
Sbjct: 184 MQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAI 243
Query: 262 --NGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLT 319
NG ++P + ++ TS P IAA+PVS A+ P+ QP P
Sbjct: 244 NANGLIATPITPSSG-----TSTPPAIAATPVSAIPAALGVNGYS-PVPTQPTGQPAPDA 297
Query: 320 QQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVA 379
N + + + + Q+ TAA P + + P PP V+ +
Sbjct: 298 LYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQ---P 354
Query: 380 DTSPQTVAPSSQDTSGQQQQIAVDTSN 406
PQ Q QQQ+ D N
Sbjct: 355 PPPPQQQQQQQQQQQQQQQREGPDGCN 381
Score = 68.2 bits (165), Expect = 1e-11
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 14 YTYYYPHYLQTKSYAPA-PHPMA-------PPSPSTNSSSNNSSNNSSGEQLSKTNLYIR 65
YT YP APA P P A PP E N++I
Sbjct: 328 YTAAYPAAYSL--VAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIY 385
Query: 66 GLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANG 125
LP TD +++++ P+G ++S K +D+ TNQ K +GFV FD+PA+AQ A+ ++ NG
Sbjct: 386 HLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM--NG 443
Query: 126 VQAQMAKQQEQ 136
Q M + + Q
Sbjct: 444 FQIGMKRLKVQ 454
Score = 49.3 bits (116), Expect = 7e-06
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 127 QAQMAKQQEQ----DPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGV 181
Q Q +QQ+Q D N++I +LP + E+ M PFGHVIS ++ D A S+
Sbjct: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423
Query: 182 GFARMESTEKCEVVIQHFNG 201
GF ++ + IQ NG
Sbjct: 424 GFVSFDNPASAQAAIQAMNG 443
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 70.1 bits (170), Expect = 4e-12
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 13 QYTYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTT 72
QYT YP T + P H + P P NL+I LP
Sbjct: 365 QYTAMYP----TAAITPIAHSVPQPPPLLQQQQREGPEGC--------NLFIYHLPQEFG 412
Query: 73 DQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK 132
D +L ++ P+G I+S+K +D+ TNQ K +GFV FD+PA+AQ A+ ++ NG Q M +
Sbjct: 413 DTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMKR 470
Query: 133 QQEQ 136
+ Q
Sbjct: 471 LKVQ 474
Score = 68.6 bits (166), Expect = 1e-11
Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 34/308 (11%)
Query: 37 PSPSTNSSSNNSSNNSSG-EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95
PSP +S G + L L++ +P ++DL L + +G+I + D
Sbjct: 21 PSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDP 80
Query: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTN----------LYISN 145
T KG F+ + + +A KA +L MA+ + P + L++
Sbjct: 81 YTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGM 140
Query: 146 LPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLK 205
L E+++ + +PFG + +LR +G S+G F + S + + I +G
Sbjct: 141 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT- 199
Query: 206 TPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNG 263
+P S L+ KFAD +++ R+ Q Q G P + L + P +A
Sbjct: 200 ----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYSAYAQA 250
Query: 264 FYSSPYSIATNRMIPQTSITPFIAASPVSTYQ-GAVITPTMDHPMSMQPANMMGPLTQQM 322
++ + + ++P +A SP Q GAV ++ PA + P +
Sbjct: 251 LMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAV-------SLNGLPATPIAPASGLH 300
Query: 323 NHLSLGTT 330
+ LGTT
Sbjct: 301 SPPLLGTT 308
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 130 MAKQQEQDPT--NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARM 186
+ +QQ + P NL+I +LP + EL M PFG++IS+++ D A S+ GF
Sbjct: 389 LQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 448
Query: 187 ESTEKCEVVIQHFNG 201
++ + IQ NG
Sbjct: 449 DNPASAQAAIQAMNG 463
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 364 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 423
Query: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 424 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 477
Score = 65.5 bits (158), Expect = 9e-11
Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 35/300 (11%)
Query: 46 NNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN--QCKGY 103
N + ++S +++ +P ++++L +L +PYG + + D++ N Q KG
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 104 GFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLPISMDE 152
FV F + AA Q A+ ++K + +Q + A ++ + L+I + +E
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
Query: 153 QELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 212
++ M PFG + RILR +G+SRG F + + I K + +
Sbjct: 122 NDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQSQTMEG 176
Query: 213 PSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTYDPTAA 259
S P++ KFAD + K Q Q N W G +AL T++
Sbjct: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSS 236
Query: 260 IQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLT 319
G +S +A + ++ AA+ + T T +P+S ++ +G LT
Sbjct: 237 SNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TTSSALGALT 292
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Query: 184 ARMESTEKCEVVIQHFNG 201
++ + IQ NG
Sbjct: 449 VSYDNPVSAQAAIQAMNG 466
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 366 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 425
Query: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 426 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 479
Score = 65.5 bits (158), Expect = 9e-11
Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 35/300 (11%)
Query: 46 NNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN--QCKGY 103
N + ++S +++ +P ++++L +L +PYG + + D++ N Q KG
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 104 GFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLPISMDE 152
FV F + AA Q A+ ++K + +Q + A ++ + L+I + +E
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
Query: 153 QELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 212
++ M PFG + RILR +G+SRG F + + I K + +
Sbjct: 122 NDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQSQTMEG 176
Query: 213 PSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTYDPTAA 259
S P++ KFAD + K Q Q N W G +AL T++
Sbjct: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSS 236
Query: 260 IQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLT 319
G +S +A + ++ AA+ + T T +P+S ++ +G LT
Sbjct: 237 SNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TTSSALGALT 292
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 391 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 450
Query: 184 ARMESTEKCEVVIQHFNG 201
++ + IQ NG
Sbjct: 451 VSYDNPVSAQAAIQAMNG 468
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 397 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 456
Query: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 457 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 510
Score = 66.6 bits (161), Expect = 4e-11
Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 35/305 (11%)
Query: 41 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-- 98
T + N + ++S +++ +P ++++L +L +PYG + + D++ N
Sbjct: 28 TANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPP 87
Query: 99 QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLP 147
Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I +
Sbjct: 88 QSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS 147
Query: 148 ISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
+E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 148 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQS 202
Query: 208 PGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTY 254
+ S P++ KFAD + K Q Q N W G +AL
Sbjct: 203 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQ 262
Query: 255 DPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANM 314
T++ G +S +A + ++ AA+ + T T +P+S ++
Sbjct: 263 QATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TTSSA 318
Query: 315 MGPLT 319
+G LT
Sbjct: 319 LGALT 323
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Query: 184 ARMESTEKCEVVIQHFNG 201
++ + IQ NG
Sbjct: 482 VSYDNPVSAQAAIQAMNG 499
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,744,793
Number of Sequences: 37866
Number of extensions: 898060
Number of successful extensions: 4901
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 4030
Number of HSP's gapped (non-prelim): 667
length of query: 419
length of database: 18,247,518
effective HSP length: 105
effective length of query: 314
effective length of database: 14,271,588
effective search space: 4481278632
effective search space used: 4481278632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.