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Search of human proteins with 50845399
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens] 422 e-119
gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens] 48 5e-06
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 38 0.005
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 38 0.005
gi|19923082 expressed in prostate and testis [Homo sapiens] 36 0.019
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 36 0.019
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 36 0.019
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 36 0.019
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 36 0.019
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 35 0.033
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 35 0.043
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 32 0.28
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 31 0.62
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 31 0.62
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 31 0.62
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 30 1.1
gi|54792787 complement factor H-related 3 [Homo sapiens] 29 2.4
gi|62912472 leucine-rich repeat-containing G protein-coupled rec... 29 2.4
gi|62912470 leucine-rich repeat-containing G protein-coupled rec... 29 2.4
gi|62912474 leucine-rich repeat-containing G protein-coupled rec... 29 2.4
gi|62739188 complement factor H isoform b precursor [Homo sapiens] 28 6.9
gi|62739186 complement factor H isoform a precursor [Homo sapiens] 28 6.9
gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Hom... 28 6.9
gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Hom... 28 6.9
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 28 6.9
gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sap... 28 6.9
gi|4758754 napsin A preproprotein [Homo sapiens] 28 6.9
gi|41349437 bone morphogenetic protein receptor, type IA precurs... 27 9.0
gi|4504141 glutamate receptor, metabotropic 4 [Homo sapiens] 27 9.0
>gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
Length = 201
Score = 422 bits (1086), Expect = e-119
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI 60
MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI
Sbjct: 1 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI 60
Query: 61 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH 120
YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH
Sbjct: 61 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH 120
Query: 121 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL 180
DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL
Sbjct: 121 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL 180
Query: 181 FLNSSGLLVLPQAGLLTPHPS 201
FLNSSGLLVLPQAGLLTPHPS
Sbjct: 181 FLNSSGLLVLPQAGLLTPHPS 201
>gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens]
Length = 147
Score = 48.1 bits (113), Expect = 5e-06
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 5 MLVGVLVMVGFTVGK-----------VPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSS 53
+L+ VLVM+ GK +P P C+ CL+E +GC+ GS+ C + S
Sbjct: 25 VLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCYRCLLETKELGCLLGSDICLTPAGS 84
Query: 54 LCMVITIYYDVKVRFIVRGC-GQYISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
C+ + +V C + C R + + +W +Q C D+CN
Sbjct: 85 SCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSPVSGFWIFSQYCFLDFCN 137
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 38.1 bits (87), Expect = 0.005
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 18 GKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G+ P I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 91 GEQPSGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 146
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 38.1 bits (87), Expect = 0.005
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 18 GKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G+ P I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 161 GEQPSGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 216
>gi|19923082 expressed in prostate and testis [Homo sapiens]
Length = 126
Score = 36.2 bits (82), Expect = 0.019
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 21 PVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIY-YDVKVRFIVRGCGQYISY 79
PV +I C C ++ P C G CT ++ CMV ++ D GC +
Sbjct: 41 PVIEIVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLK---- 96
Query: 80 RCQEKRNTYFAEYWYQAQCCQ-YDYCN 105
C + + ++ Y +CC+ +D CN
Sbjct: 97 NCADVKGIRWSVYLVNFRCCRSHDLCN 123
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 36.2 bits (82), Expect = 0.019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 14 GFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G + I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 121 GAPISSTSTGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 180
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 36.2 bits (82), Expect = 0.019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 14 GFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G + I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 176 GAPISSTSTGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 235
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 36.2 bits (82), Expect = 0.019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 14 GFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G + I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 81 GAPISSTSTGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 140
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 36.2 bits (82), Expect = 0.019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 14 GFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
G + I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 106 GAPISSTSTGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 165
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 35.4 bits (80), Expect = 0.033
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 25 IRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC 73
I C+ C + C+ G C +S CM+ I+ K++F+V+GC
Sbjct: 43 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC 91
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 35.0 bits (79), Expect = 0.043
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 28 CHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGCGQYISYRCQEKRNT 87
C C + + C G CT CM++ IY ++ C ++ + RN
Sbjct: 23 CITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMTFDLRNR 82
Query: 88 YFAEYWYQAQCCQYDYCN 105
Y CC Y+YCN
Sbjct: 83 -----TYVHTCCNYNYCN 95
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 32.3 bits (72), Expect = 0.28
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 1 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI 60
MK ML+ + V++ + DIR CH C + P +GC+ + C + C+
Sbjct: 1 MKALMLLTLSVLLCWVSA-----DIR-CHSCY-KVPVLGCVD-RQSCRLEPGQQCLTTHA 52
Query: 61 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYW--YQAQCCQYDYCNS 106
Y F CG CQE N + Y CC D CNS
Sbjct: 53 YLGKMWVFSNLRCGTP-EEPCQEAFNQTNRKLGLTYNTTCCNKDNCNS 99
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 31.2 bits (69), Expect = 0.62
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 9 VLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRF 68
+L ++ + +P+ CH C + C + +C + + CM YY
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPM-RCP-AMVAYCMTTRTYYTPTRMK 59
Query: 69 IVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
+ + C RC E ++++ CCQYD CN
Sbjct: 60 VSKSCVP----RCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 31.2 bits (69), Expect = 0.62
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 9 VLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRF 68
+L ++ + +P+ CH C + C + +C + + CM YY
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPM-RCP-AMVAYCMTTRTYYTPTRMK 59
Query: 69 IVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
+ + C RC E ++++ CCQYD CN
Sbjct: 60 VSKSCVP----RCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 31.2 bits (69), Expect = 0.62
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 9 VLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRF 68
+L ++ + +P+ CH C + C + +C + + CM YY
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPM-RCP-AMVAYCMTTRTYYTPTRMK 59
Query: 69 IVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
+ + C RC E ++++ CCQYD CN
Sbjct: 60 VSKSCVP----RCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
Length = 4655
Score = 30.4 bits (67), Expect = 1.1
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 24 DIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGCGQYISYRCQE 83
++RTCH + S C+ KC S+ C+ + D RF Q + C
Sbjct: 3794 EMRTCHPEYFQCTSGHCVHSELKC--DGSADCLDASDEADCPTRFPDGAYCQATMFEC-- 3849
Query: 84 KRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPHDRPLALPLSDSQIQWFYQALN 141
K + YW +C D C S +L L P + P +++ + ++ N
Sbjct: 3850 KNHVCIPPYW---KCDGDDDCGDGSDEELHLCLDVPCNSPNRFRCDNNRCIYSHEVCN 3904
>gi|54792787 complement factor H-related 3 [Homo sapiens]
Length = 330
Score = 29.3 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 74 GQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWS 108
G+Y SY C E T YW C Q N WS
Sbjct: 48 GKYYSYYCDEHFETPSGSYWDYIHCTQ----NGWS 78
>gi|62912472 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 2 [Homo sapiens]
Length = 915
Score = 29.3 bits (64), Expect = 2.4
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 94 YQAQCCQYDYCNS-------WSSPQLQSSLPEPHDRPLALPLS------DSQIQWFYQAL 140
Y QCC Y C S W + L E RPL L D + +
Sbjct: 423 YAYQCCPYGMCASFFKASGQWEAEDLHLDDEESSKRPLGLLARQAENHYDQDLDELQLEM 482
Query: 141 NLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYLFLNSSGLLVL 190
S P P+ P P L + G+ A + L + +GL++L
Sbjct: 483 EDSKPHPSVQCSPTPGPFKPCEYLFESWGIRLAVWAIVLLSVLCNGLVLL 532
>gi|62912470 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 1 [Homo sapiens]
Length = 967
Score = 29.3 bits (64), Expect = 2.4
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 94 YQAQCCQYDYCNS-------WSSPQLQSSLPEPHDRPLALPLS------DSQIQWFYQAL 140
Y QCC Y C S W + L E RPL L D + +
Sbjct: 475 YAYQCCPYGMCASFFKASGQWEAEDLHLDDEESSKRPLGLLARQAENHYDQDLDELQLEM 534
Query: 141 NLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYLFLNSSGLLVL 190
S P P+ P P L + G+ A + L + +GL++L
Sbjct: 535 EDSKPHPSVQCSPTPGPFKPCEYLFESWGIRLAVWAIVLLSVLCNGLVLL 584
>gi|62912474 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 3 [Homo sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 2.4
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 94 YQAQCCQYDYCNS-------WSSPQLQSSLPEPHDRPLALPLS------DSQIQWFYQAL 140
Y QCC Y C S W + L E RPL L D + +
Sbjct: 336 YAYQCCPYGMCASFFKASGQWEAEDLHLDDEESSKRPLGLLARQAENHYDQDLDELQLEM 395
Query: 141 NLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYLFLNSSGLLVL 190
S P P+ P P L + G+ A + L + +GL++L
Sbjct: 396 EDSKPHPSVQCSPTPGPFKPCEYLFESWGIRLAVWAIVLLSVLCNGLVLL 445
>gi|62739188 complement factor H isoform b precursor [Homo sapiens]
Length = 449
Score = 27.7 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 74 GQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWS 108
G+Y SY C E T YW C Q + WS
Sbjct: 350 GKYYSYYCDEHFETPSGSYWDHIHCTQ----DGWS 380
>gi|62739186 complement factor H isoform a precursor [Homo sapiens]
Length = 1231
Score = 27.7 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 74 GQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWS 108
G+Y SY C E T YW C Q + WS
Sbjct: 350 GKYYSYYCDEHFETPSGSYWDHIHCTQ----DGWS 380
>gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 87 TYFAEYW------YQAQCCQYDYCNSWSSPQLQS-SLPEPHD-RPLALPLSDSQI--QWF 136
TYF Y Y A C ++D C W +P S S PE + +P P QWF
Sbjct: 1667 TYFWNYECDALSAYVALCNKFDICIQWRTPDYCSLSCPEGKEYQPCVRPCEARTCLNQWF 1726
Query: 137 Y 137
Y
Sbjct: 1727 Y 1727
>gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 87 TYFAEYW------YQAQCCQYDYCNSWSSPQLQS-SLPEPHD-RPLALPLSDSQI--QWF 136
TYF Y Y A C ++D C W +P S S PE + +P P QWF
Sbjct: 1667 TYFWNYECDALSAYVALCNKFDICIQWRTPDYCSLSCPEGKEYQPCVRPCEARTCLNQWF 1726
Query: 137 Y 137
Y
Sbjct: 1727 Y 1727
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 27.7 bits (60), Expect = 6.9
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 105 NSWSSPQLQSSLPEPHD-RPLALPLSDSQIQWFYQALNLS-------LPLPNFHAGTEPD 156
N +P Q L P + L PL+D QW Q L NF EP
Sbjct: 148 NLRETPISQKPLLNPSSTQGLTKPLADGTAQWNGQETECQDDCFLGKSDLQNFEELREPA 207
Query: 157 GLDPMVTLSLNLGLSFAELRRMYLFLNSSGLLVLPQAGLLTPHP 200
G P++ L L +L +L S+ L + AG++T P
Sbjct: 208 GTGPLLGHLLELAKDALKLPDDHLHALSNPLPLTTTAGVVTGLP 251
>gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sapiens]
Length = 2250
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 87 TYFAEYW------YQAQCCQYDYCNSWSSPQLQS-SLPEPHD-RPLALPLSDSQI--QWF 136
TYF Y Y A C ++D C W +P S S PE + +P P QWF
Sbjct: 1667 TYFWNYECDALSAYVALCNKFDICIQWRTPDYCSLSCPEGKEYQPCVRPCEARTCLNQWF 1726
Query: 137 Y 137
Y
Sbjct: 1727 Y 1727
>gi|4758754 napsin A preproprotein [Homo sapiens]
Length = 420
Score = 27.7 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 107 WSSPQLQSSL--PEPHDRPLALPLSDSQIQWFYQALNLSLPLPNF 149
W P L P P D+P+ +PLS+ + ++ + L P NF
Sbjct: 47 WREPAELPKLGAPSPGDKPIFVPLSNYRDVQYFGEIGLGTPPQNF 91
>gi|41349437 bone morphogenetic protein receptor, type IA precursor
[Homo sapiens]
Length = 532
Score = 27.3 bits (59), Expect = 9.0
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 48 TISSSSLCMVITIYYDVKVRFIVRGCGQY--ISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
T ++ C I D + GC +Y ++C++ A+ +CC+ + CN
Sbjct: 75 TCITNGHCFAIIEEDDQGETTLASGCMKYEGSDFQCKDSPK---AQLRRTIECCRTNLCN 131
Query: 106 SWSSPQLQSSLPEPHDRPLAL-PLSDSQIQWFYQALNLSL 144
+ LQ +LP P+ + P D I+W +++++
Sbjct: 132 QY----LQPTLP-----PVVIGPFFDGSIRWLVLLISMAV 162
>gi|4504141 glutamate receptor, metabotropic 4 [Homo sapiens]
Length = 912
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 67 RFIVRGCGQYISYRCQE--KRNTYFAEYW 93
R VRG +Y S R + +RN +FAE+W
Sbjct: 338 RMSVRGFDRYFSSRTLDNNRRNIWFAEFW 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,742,158
Number of Sequences: 37866
Number of extensions: 415135
Number of successful extensions: 1108
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 32
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.