Guide to the Human Genome
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Name: LY6G5B Sequence: fasta or formatted (201aa) NCBI GI: 50845399
Description:

lymphocyte antigen 6 complex G5B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          7           1
 C cysteine            5.0         10           2
 D aspartate           4.0          8           1
 E glutamate           3.5          7           1
 F phenylalanine       4.0          8           1
 G glycine             6.0         12           1
 H histidine           2.5          5           1
 I isoleucine          4.0          8           1
 K lysine              2.5          5           1
 L leucine            12.9         26           2
 M methionine          3.0          6           1
 N asparagine          3.0          6           1
 P proline             7.5         15           1
 Q glutamine           5.5         11           1
 R arginine            4.0          8           2
 S serine             10.4         21           4
 T threonine           4.0          8           1
 V valine              8.0         16           1
 W tryptophan          1.5          3           1
 Y tyrosine            5.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte antigen 6 complex G5B 
LY6G5C                0.058   lymphocyte antigen 6 complex G5C 
ACRV1                 0.033   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.033   acrosomal vesicle protein 1 isoform b precursor [Homo...
PATE1                 0.028   expressed in prostate and testis 
ACRV1                 0.028   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.028   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.028   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.028   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.025   acrosomal vesicle protein 1 isoform j precursor [Homo...
PATE3                 0.025   prostate and testis expressed 3 
LY6G6C                0.018   lymphocyte antigen 6 complex G6C 
LYNX1                 0.015   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.015   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.015   Ly-6 neurotoxin-like protein 1 isoform c 
LRP2                  0.013   low density lipoprotein-related protein 2 
CFHR3                 0.010   complement factor H-related 3 
LGR6                  0.010   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.010   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.010   leucine-rich repeat-containing G protein-coupled rec...
CFH                   0.008   complement factor H isoform b precursor 
CFH                   0.008   complement factor H isoform a precursor 
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
LOC100287587          0.008   PREDICTED: hypothetical protein XP_002343392 
C12orf64              0.008   PREDICTED: hypothetical protein LOC283310 
NAPSA                 0.008   napsin A preproprotein 
BMPR1A                0.005   bone morphogenetic protein receptor, type IA precurs...
GRM4                  0.005   glutamate receptor, metabotropic 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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