Guide to the Human Genome
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Name: CFHR3 Sequence: fasta or formatted (330aa) NCBI GI: 54792787
Description:

complement factor H-related 3

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         11           1
 C cysteine            6.4         21           1
 D aspartate           2.7          9           1
 E glutamate           6.4         21           2
 F phenylalanine       3.0         10           1
 G glycine             7.6         25           2
 H histidine           1.8          6           1
 I isoleucine          6.7         22           2
 K lysine              5.8         19           1
 L leucine             5.2         17           3
 M methionine          1.2          4           1
 N asparagine          6.7         22           2
 P proline             7.3         24           4
 Q glutamine           3.9         13           1
 R arginine            3.9         13           2
 S serine              8.5         28           3
 T threonine           5.8         19           2
 V valine              4.8         16           1
 W tryptophan          1.8          6           1
 Y tyrosine            7.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement factor H-related 3 
CFHR4                 0.648   complement factor H-related 4 
CFH                   0.501   complement factor H isoform a precursor 
CFHR1                 0.402   complement factor H-related 1 
LOC100293069          0.402   PREDICTED: similar to complement factor H-related 1...
CFH                   0.352   complement factor H isoform b precursor 
CFHR2                 0.288   H factor (complement)-like 3 
LOC100293069          0.268   PREDICTED: similar to complement factor H-related 1...
CFHR5                 0.249   complement factor H-related 5 
F13B                  0.197   coagulation factor XIII B subunit precursor 
CR1                   0.085   complement receptor 1 isoform S precursor 
CR1                   0.085   complement receptor 1 isoform F precursor 
SVEP1                 0.082   polydom 
CSMD3                 0.078   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.078   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.078   CUB and Sushi multiple domains 3 isoform 1 
CR1L                  0.076   complement component (3b/4b) receptor 1-like 
CR2                   0.066   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.066   complement component (3d/Epstein Barr virus) recepto...
CSMD1                 0.066   CUB and Sushi multiple domains 1 
SUSD4                 0.063   sushi domain containing 4 isoform a 
SEZ6L2                0.053   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.053   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.053   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
SEZ6L2                0.053   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
SEZ6L                 0.052   seizure related 6 homolog (mouse)-like precursor [Ho...
C4BPA                 0.049   complement component 4 binding protein, alpha chain p...
APOH                  0.042   apolipoprotein H precursor 
C4BPB                 0.040   complement component 4 binding protein, beta chain i...
C4BPB                 0.040   complement component 4 binding protein, beta chain i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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