Guide to the Human Genome
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Name: CFH Sequence: fasta or formatted (449aa) NCBI GI: 62739188
Description:

complement factor H isoform b precursor

Referenced in:

Complement

Other entries for this name:
alt prot [1231aa] complement factor H isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         18           1
 C cysteine            6.7         30           1
 D aspartate           4.7         21           2
 E glutamate           6.9         31           2
 F phenylalanine       2.9         13           1
 G glycine             8.5         38           2
 H histidine           2.4         11           1
 I isoleucine          5.3         24           2
 K lysine              5.8         26           1
 L leucine             4.7         21           2
 M methionine          1.8          8           1
 N asparagine          4.9         22           1
 P proline             7.8         35           2
 Q glutamine           2.7         12           1
 R arginine            5.6         25           2
 S serine              5.6         25           2
 T threonine           6.0         27           2
 V valine              5.1         23           2
 W tryptophan          2.2         10           1
 Y tyrosine            6.5         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement factor H isoform b precursor 
CFH                   0.992   complement factor H isoform a precursor 
CFHR3                 0.252   complement factor H-related 3 
CFHR4                 0.139   complement factor H-related 4 
C4BPA                 0.125   complement component 4 binding protein, alpha chain p...
CR1                   0.121   complement receptor 1 isoform S precursor 
CR1                   0.121   complement receptor 1 isoform F precursor 
SVEP1                 0.119   polydom 
CSMD3                 0.112   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.112   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.112   CUB and Sushi multiple domains 3 isoform 1 
CFHR1                 0.108   complement factor H-related 1 
LOC100293069          0.108   PREDICTED: similar to complement factor H-related 1...
LOC100293069          0.108   PREDICTED: similar to complement factor H-related 1...
CSMD1                 0.107   CUB and Sushi multiple domains 1 
CFHR2                 0.106   H factor (complement)-like 3 
CR1L                  0.105   complement component (3b/4b) receptor 1-like 
CFHR5                 0.100   complement factor H-related 5 
CSMD2                 0.098   CUB and Sushi multiple domains 2 
CR2                   0.097   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.087   complement component (3d/Epstein Barr virus) recepto...
F13B                  0.086   coagulation factor XIII B subunit precursor 
SELP                  0.080   selectin P precursor 
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.078   CD46 antigen, complement regulatory protein isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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