Guide to the Human Genome
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Name: PATE1 Sequence: fasta or formatted (126aa) NCBI GI: 19923082
Description:

expressed in prostate and testis

Referenced in:

Prostate
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          6           1
 C cysteine            9.5         12           2
 D aspartate           4.8          6           1
 E glutamate           5.6          7           2
 F phenylalanine       4.8          6           1
 G glycine             6.3          8           1
 H histidine           1.6          2           1
 I isoleucine          4.8          6           1
 K lysine              4.8          6           1
 L leucine            11.1         14           3
 M methionine          4.8          6           1
 N asparagine          6.3          8           2
 P proline             3.2          4           1
 Q glutamine           1.6          2           1
 R arginine            7.9         10           1
 S serine              5.6          7           1
 T threonine           3.2          4           2
 V valine              7.1          9           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   expressed in prostate and testis 
PATE3                 0.114   prostate and testis expressed 3 
C9orf57               0.069   hypothetical protein LOC138240 
ACRV1                 0.065   acrosomal vesicle protein 1 isoform j precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.061   acrosomal vesicle protein 1 isoform b precursor [Homo...
PATE4                 0.049   prostate and testis expressed 4 
LY6G5B                0.045   lymphocyte antigen 6 complex G5B 
FAM76A                0.008   hypothetical protein LOC199870 isoform 4 
FAM76A                0.008   hypothetical protein LOC199870 isoform 2 
FAM76A                0.008   hypothetical protein LOC199870 isoform 1 
FAM76A                0.008   hypothetical protein LOC199870 isoform 5 
FAM76A                0.008   hypothetical protein LOC199870 isoform 3 
DLK2                  0.004   EGF-like-domain, multiple 9 
DLK2                  0.004   EGF-like-domain, multiple 9 
FGD6                  0.004   FYVE, RhoGEF and PH domain containing 6 
AHRR                  0.004   arylhydrocarbon receptor repressor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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